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2020 (27)
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2009 (11)
2007 (6)
2006 (2)

UNIPROT ID/AC

P27361 (10)
P04049 (10)
Q02750 (10)
Q05655 (6)
O14640 (6)
O15169 (6)
Q13905 (6)
P25054 (6)
P67775 (6)
Q15418 (6)
P01024 (6)
P30086 (6)
Q9UJU2 (6)
P35222 (6)
P62834 (6)
P49841 (6)
P15056 (6)
P01112 (6)
P01133 (6)
P00533 (6)
P47736 (6)
P60484 (6)
P31749 (6)
P28482 (6)
P62070 (6)
Q07889 (6)
P20936 (6)
P61225 (4)
P51452 (4)
Q6ZRP7 (2)

ENSEMBL ID

ENSG00000165661 (2)
ENSG00000176654 (2)
ENSG00000204531 (2)

CHEBI ID

CHEBI:0016618 (6)
CHEBI:0018348 (6)
CHEBI:44897 (1)
CHEBI:35799 (1)
CHEBI:17489 (1)
CHEBI:4170 (1)
CHEBI:4167 (1)
CHEBI:32816 (1)
CHEBI:15422 (1)
CHEBI:17234 (1)
CHEBI:33699 (1)
CHEBI:183798 (1)
CHEBI:183799 (1)
CHEBI:64576 (1)
CHEBI:64549 (1)
CHEBI:64566 (1)
CHEBI:64568 (1)
CHEBI:64569 (1)
CHEBI:64563 (1)

Metabolite Name

20:4 Cholesteryl ester (1)
18:2 Cholesteryl ester (1)
TAG 10:0-16:0-16:0 (1)
C00049 (1)
HMDB0000511 (1)
LysoPC 18:1 (1)
LysoPC 16:0 (1)
LysoPC 20:4 (1)
LysoPC 18:2 (1)
LysoPE 20:4 (1)
LysoPE 18:0 (1)

First Public Date

2026 (78)
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2024 (45)
2021 (31)
2023 (29)
2018 (29)
2020 (28)
2022 (23)
2019 (22)
2014 (20)
2017 (18)
2013 (13)
2015 (12)
2016 (4)

Modelling Approach

Ordinary differential equation model (65)
Constraint-based model (1)

Lab affiliation

Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh EH9 3BF, UK. (2)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute of Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands (2)
Department of Biochemistry, University of Oxford (2)
Institute of Biochemistry II, University Hospital, Goethe University, Frankfurt, Germany (2)
South China Agricultural University (2)
1. Wellcome Trust Centre for Cell Biology, Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, UK 2. Department of Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Germany (1)
Aarhus University, Denmark (1)
Baxter Laboratory for Stem Cell Biology Department of Microbiology & Immunology Stanford University School of Medicine (1)
Bioanalytics, Institute of Biotechnology, Technische Universität Berlin, Berlin, Germany (1)
Biomolecular Mass Spectrometry & Proteomics, Bijvoet Center for Biomolecular Research, Department of Chemistry, Faculty of Science, Utrecht University, Utrecht, the Netherlands. (1)
Bristol-Myers Squibb, USA (1)
CEITEC—Central European Institute of Technology, Masaryk University, Brno, Czech Republic National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno, Czech Republic (1)
Center for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland (1)
Center for Translational Medicine, The Affiliated Zhangjiagang Hospital of Soochow University, Suzhou Medical College of Soochow University (1)
Chromatin Proteomics Biomedical Center, LMU München Grosshaderner Strasse 9 D-82152 Planegg-Martinsried +4989218075420 (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Goettingen, Germany (1)
Core Facility for Mass Spectrometry & Proteomics Center for Molecular Biology of Heidelberg University (ZMBH 69120 Heidelberg (1)
Department of Biochemistry and Molecular Biology, Pennsylvania State University College of Medicine, Milton S. Hershey Medical Center, Hershey, PA 17033 (1)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada (1)
Department of Biochemistry, University of Missouri, Columbia, MO 65211, USA; Institute for Data Science and Informatics, University of Missouri, Columbia, MO 65211, USA (1)
Department of Biology of the Cell Nucleus, Institute of Molecular Genetics of the Czech Academy of Sciences, Vídeňská 1083, 142 20 Prague, Czech Republic (1)
Department of Biology, Technical University of Darmstadt, Darmstadt, Germany (1)
Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Department of Cancer Genetics and Epigenetics, Beckman Research Institute, City of Hope Medical Center, Duarte, CA 91010, USA (1)
Department of Fundamental Microbiology, University of Lausanne, 1015 Lausanne, Switzerland. (1)
Department of Infection, Immunity and Inflammation, University of Leicester, Leicester, LE1 9HN (1)
Department of Liver Surgery and Transplantation, Liver Cancer Institute, Zhongshan Hospital, Fudan University, and Key Laboratory of Carcinogenesis and Cancer Invasion, Ministry of Education (1)
Department of Molecular Genetics, Weizmann Institute of Science, Rehovot, 7610001, Israel (1)
Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Am Klopferspitz 18, 82152 Martinsried, Germany (1)
Department of Molecular and Cellular Biology Faculty of Sciences III University of Geneva (1)

IsPrivate

False (68)

Model Flag

Non Kinetic (3)

Classification

protozoa (3)
bacteria (3)
fungi (1)
viruses (1)

Study type

Transcription profiling by array (117)
ChIP-seq (104)
RNA-seq of coding RNA (51)
Other (20)
ChIP-chip by tiling array (17)
RNA-seq of non coding RNA (14)
Methylation profiling by high throughput sequencing (8)
Comparative genomic hybridization by array (7)
Unknown experiment type (6)
Hi-C (6)
Transcription profiling by tiling array (4)
Methylation profiling by array (4)
Cell line - High-throughput sequencing (3)
RNA-seq of total RNA (3)
Plant - High-throughput sequencing (2)
ChIP-chip by array (2)
Genotyping by array (2)
RNA-seq of coding RNA from single cells (2)
Animal - Single-cell sequencing (1)
Translation profiling (1)
RNAi profiling by array (1)
ATAC-seq (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Proteomic profiling by array (1)

Release Date

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2007 (63)
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2004 (22)
2003 (19)
2001 (12)
2002 (11)
2000 (11)
1998 (6)
1999 (4)
1997 (3)

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Cohesin is a key determinant of interphase chromosome domain architecture (HiC)

To ensure proper gene regulation within constrained nuclear space, chromosomes facilitate access to transcribed regions, while compactly packaging all other information. Recent studies revealed that chromosomes are organized into megabase-scale domains that demarcate active and inactive genetic elem...

ORGANISM(S): Mus musculus

2013-12-11 | E-GEOD-49017 | biostudies-arrayexpress

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture.

Topological domains are key architectural building blocks of chromosomes in complex genomes. Their functional importance and evolutionary dynamics are however not well defined. Here we performed comparative Hi-C in liver cells from four mammalian species, and characterized the conservation and dive...

ORGANISM(S): Canis lupus familiaris

2015-02-26 | E-GEOD-65126 | biostudies-arrayexpress

Cohesin is a key determinant of interphase chromosome domain architecture (ChIP-seq)

ORGANISM(S): Mus musculus

2013-12-11 | E-GEOD-48938 | biostudies-arrayexpress

Cohesin is a key determinant of interphase chromosome domain architecture (RNA-seq)

ORGANISM(S): Mus musculus

2013-12-11 | E-GEOD-48965 | biostudies-arrayexpress

Cohesin is a key determinant of interphase chromosome domain architecture

This SuperSeries is composed of the SubSeries listed below. Refer to individual Series

ORGANISM(S): Mus musculus

2013-12-11 | E-GEOD-49018 | biostudies-arrayexpress