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ProteomicsTime-dependent proteomic signatures associated with embry-ogenic callus induction in Carica papaya L.
The cost of Carica papaya production through seed-based propagation is increased by sex segregation, making in vitro techniques a more appealing option for clonal propagation. Inducing embryogenic callus with 2,4-dichlorophenoxyacetic acid (2,4-D) hold the potential to large-scale cloning, although ...
ORGANISM(S): Carica papaya 
2024-01-26 | PXD046521 | Pride
Bottom-up proteomics  carica papaya  embryogenic callus  somatic embryos  time-series analysis. 
ProteomicsEmbryogenic competence acquisition in sugarcane callus is associated with differential H+ pump abundance and activity
Somatic embryogenesis is an important biological process in several plant species, including sugarcane. Proteomics approaches have shown that H+ pumps are differentially regulated during somatic embryogenesis; however, the relationship between H+ flux and embryogenic competence is still unclear. Thi...
ORGANISM(S): Saccharum officinarum 
2018-06-26 | PXD009858 | Pride
Somatic embryogenesis  ion-selective vibrating probe  saccharum ssp.  h+ pumps  microsomal proteomics 
GenomicsVitis vinifera embryogenic callus epigenomics (WGBS data)
Vitis vinifera embryogenic callus epigenomics (WGBS data)
PRJNA691259 | ENA
GenomicsVitis vinifera embryogenic callus epigenomics (RNA-seq)
Vitis vinifera embryogenic callus epigenomics (RNA-seq)
PRJNA691261 | ENA
TranscriptomicsGenome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
Small RNAs constitute a new and unanticipated layer of gene regulation present in the three domains of life. In plants, all organs are ultimately derived from a few pluripotent stem cells localized in specialized structures called apical meristems. The development of meristems involves a coordinated...
ORGANISM(S): Oryza sativa 
2011-03-07 | E-GEOD-27699 | biostudies-arrayexpress
GenomicsKalopanax septemlobus strain:embryogenic callus
Kalopanax septemlobus strain:embryogenic callus Transcriptome or Gene expression
PRJNA226262 | ENA
GenomicsVitis vinifera embryogenic callus epigenomics
Vitis vinifera embryogenic callus epigenomics
PRJNA691251 | ENA
GenomicsVitis vinifera embryogenic callus epigenomics (small RNA data)
Vitis vinifera embryogenic callus epigenomics (small RNA data)
PRJNA691263 | ENA
ProteomicsIntegrative proteomics and phosphoproteomics reveals phosphorylation networks involved in maintenance and expression of embryogenic competence in sugarcane callus
Sugarcane (Saccharum spp.) is one of the most important crops for sugar, biofuels and bioenergy production, becoming an important commodity in the world agricultural market for more than 100 countries. In this study, label-free quantitative proteomics and phosphoproteomics analyses were performed to...
ORGANISM(S): Saccharum hybrid cultivar SP80-3280 
2022-05-07 | PXD027388 | Pride
Label-free phosphoproteomics Embryo development Somatic embryogenesis Sugarcane 
ProteomicsTMT-based quantitative proteomic analyses provide insights into acquisition of embryogenic ability in Agapanthus praecox
Somatic embryogenesis (SE) is an ideal model for plant cell totipotency. Transition from somatic cells to embryonic cells is the key to SE. The poor frequency of embryonic callus (EC) induction has limited the application of SE in many plants, such as Agapanthus praecox. We performed large-scale, qu...
ORGANISM(S): Agapanthus Praecox 
2022-01-25 | PXD031207 |
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