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TranscriptomicsCold stress in sugarcane exp2
Tropical and subtropical plants are generally sensitive to cold and can show appreciable variation in their response to cold stress when exposed to low positive temperatures. Using nylon filter arrays, we analyzed the expression profile of 1536 expressed sequence tags (ESTs) of sugarcane (Saccharum ...
ORGANISM(S): Saccharum sp. 
2010-06-05 | E-GEOD-84 | biostudies-arrayexpress
TranscriptomicsCold stress in sugarcane exp1
Tropical and subtropical plants are generally sensitive to cold and can show appreciable variation in their response to cold stress when exposed to low positive temperatures. Using nylon filter arrays, we analyzed the expression profile of 1536 expressed sequence tags (ESTs) of sugarcane (Saccharum ...
ORGANISM(S): Saccharum sp. 
2010-06-05 | E-GEOD-83 | biostudies-arrayexpress
TranscriptomicsAnalysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns
Sugarcane is an important crop worldwide for sugar production and increasingly, as a renewable energy source. Modern cultivars have polyploid, large complex genomes, with highly unequal contributions from ancestral genomes. Long Terminal Repeat retrotransposons (LTR-RTs) are the single largest compo...
ORGANISM(S): Saccharum officinarum 
2012-04-16 | E-GEOD-35143 | biostudies-arrayexpress
TranscriptomicsSugarcane Expression Data from Stress Time Series
Sugarcane one-eyed seed sets obtained from a variety sensitive to drought conditions (cv. SP90-1638, CTC, Brazil) were cultivated on moist sand for 15 days. The plants were transferred to pots containing moist sand and were irrigated with Hoagland's solution (Hoagland and Arnon, 1950). Regular water...
ORGANISM(S): Saccharum hybrid cultivar (mixed) 
2012-07-31 | E-GEOD-33574 | biostudies-arrayexpress
ProteomicsAnalysis of differentially abundant proteins in sugarcane during red rot infection
The project is aimed at analysing the comparitive proteomics of red rot resistant cultivar (BO91) and red rot susceptible cultivar (COJ64) of sugarcane. The differentially abundant proteins shall be used to identify the corresponding genes.
ORGANISM(S): Saccharum hybrid cultivar CoJ64 Saccharum hybrid cultivar BO91 
2023-03-23 | PXD033375 | Pride
Proteomics Red rot Lcms Sugarcane Colletotrichum falcatum 
ProteomicsCell wall proteome of sugarcane young and mature leaves and stems
By characterizing the cell wall proteomes of different sugarcane organs (leaves and stems) at two developmental stages (young vs mature/apical vs basal), it was possible to address unique characteristics in each of them. Four-month-old leaves showed a higher proportion of oxido-reductases and protei...
ORGANISM(S): Saccharum spp. complex hybrid 
2018-01-05 | PXD007893 | Pride
Cell wall protein/leaf/mass spectrometry/proteomics/shotgun analysis/ stem/sugarcane 
ProteomicsIdentification of specific proteins and metabolic networks associated with sucrose accumulation in sugarcane
The rate of improvement of sugar content in sugarcane remains low for decades worldwide. Our previous transcriptome studies provided an atlas of sucrose accumulation-related gene expression but little is known about proteins involved. Here this knowledge gap is addressed by a proteomic analysis of e...
ORGANISM(S): Saccharum spp. complex hybrid 
2022-08-12 | PXD024569 | Pride
Sugarcane  proteomics  differential expression  proteins  sucrose accumulation  sugar metabolism 
MetabolomicsProteomics reveals an increase in the abundance of glycolytic and ethanolic fermentation enzymes in developing sugarcane culms during sucrose accumulation
Not available
ORGANISM(S): Saccharum spp 
ST001879 | MetabolomicsWorkbench
TranscriptomicsIdentification of sugarcane microRNAs differentially regulated by pathogenic and beneficial microorganisms
Sugarcane is a very efficient crop to produce ethanol. In recent years, extensive efforts have been made in order to increase sugarcane yields. To reach this goal, molecular biology tools have been used comprehensively, identifying genes, pathways and genetic polymorphisms. However, some important m...
ORGANISM(S): Saccharum hybrid cultivar SP70-1143 
2012-11-30 | E-GEOD-42628 | biostudies-arrayexpress
ProteomicsAnalysis of differential proteins in Colletotrichum falcatum during red rot infection in sugarcane
The project is aimed at analysing the comparitive proteomics of red rot pathogen, C. falcatum, during red rot infection in sugarcane. The differentially abundant proteins shall be used to identify the corresponding genes.
ORGANISM(S): Colletotrichum falcatum 
2023-03-23 | PXD033368 | Pride
Proteomics Lcms Red rot of sugarcane Colletotrichum falcatum 
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