end-product quality

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Transcriptomics (827)
Unknown (293)
Genomics (180)
Metabolomics (44)
Proteomics (37)
Clinical (2)
Multiomics (1)

Organisms

Homo sapiens (329)
Mus musculus (269)
Rattus norvegicus (43)
Drosophila melanogaster (35)
Saccharomyces cerevisiae (26)
Gallus gallus (22)
Arabidopsis thaliana (19)
Danio rerio (18)
Bos taurus (18)
Escherichia coli (10)
Caenorhabditis elegans (9)
Candida albicans (8)
Sus scrofa (8)
Neisseria meningitidis (7)
Xenopus laevis (5)
Trypanosoma brucei (4)
Neisseria gonorrhoeae (3)
Brugia malayi (3)
Zea mays (3)
Myxococcus xanthus (2)
Leishmania major (2)
Papio hamadryas (2)
Drosophila simulans (2)
Macaca fascicularis (2)
Clostridium acetobutylicum (2)
Apis mellifera (2)
Schizosaccharomyces pombe (2)
Vitis vinifera (2)
mixed sample (2)
Staphylococcus aureus (2)

Organisms

Homo sapiens (9)
Mus musculus (8)
mouse gut metagenome (3)
Bifidobacterium breve UCC2003 (1)
Kluyveromyces lactis (1)
Mycobacterium tuberculosis H37Rv (1)
Clostridioides difficile (1)
fermentation metagenome (1)
Arabidopsis thaliana (1)
Bos taurus (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (948)
MetaboLights (43)
ENA (42)
pride (16)
EGA (11)
MassIVE (11)
PAXDB (9)
geo (8)
NODE (3)
GNPS (1)

Tissue

Liver (2)
Aleurone layer (2)
Endosperm (2)
Blood plasma (1)
Blood serum (1)
Cell culture (1)
Colon (1)
Colon epithelial cell (1)
Epithelial cell (1)
Esophagus (1)
Follicular fluid (1)
Leaf (1)
Root (1)
Seed (1)
Uterine cervix (1)
Venom (1)

Disease

Normal (9)
Vitamin B12 deficiency (1)
Oropharynx squamous-cell carcinoma in DiseaseLocation oropharynx has DiseaseStaging lymph node negative (N0) (1)
Phyllodes tumor (1)
Embryonic lethal at day 8.5 to 9.5 (1)
Ischaemia reperfusion injury (1)
Post-stasis (1)
Skin clear cell carcinoma (1)
Squamous cell carcinoma has accession C0007137 in DiseaseStateDatabase NCI_Thesaurus (1)
Apparently healthy (1)
Xenografts with H1299 cell line (1)
Infected (1)
Chronic granulomatous disease (1)
Dukes D primary colon cancer (1)
Mock infected (1)
Control (1)
Porphyria NOS (1)
Colon cancer metastasis (1)
IRAK-4 Q293X mutation (1)
Early-onset idiopathic chronic pancreatitis (1)
Rheumatoid arthritis (1)
None- acute control (1)
Invasive lobular carcinoma (1)
Eimeria maxima infected (1)
Head and neck squamous cell carcinoma (1)
Neurological disease (1)
Benign adenoma (1)
Mastitis (1)
Chronic lymphocytic leukemia (1)
Sarcoma (1)

Technology Type

Mass spectrometry (31)
Mass Spectrometry (16)
Mass spectrometry assay (10)
Shotgun proteomics (10)
NMR spectroscopy (2)
Gel-based experiment (2)
SWATH MS (2)
NMR spectroscopy assay (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Bottom-up proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (48)
BGISEQ-500 (23)
Illumina HiSeq 2000 (21)
Illumina HiSeq 2500 (20)
NextSeq 500 (15)
Illumina HiSeq 4000 (12)
NextSeq 550 (9)
DNBSEQ-T7 (7)
Illumina MiSeq (7)
ScanArray 5000 [PerkinElmer] (5)
ScanArray Express HT (5)
Axon GenePix 4000B scanning hardware (5)
G2565AA DNA microarray scanner [Agilent] (4)
Affymetrix GeneChip(R) HT Scanner (3)
Scanning hardware (3)
Illumina NovaSeq X (3)
Complete Genomics (2)
Qiagen MinElute (2)
Illumina HiSeq 3000 (2)
BD Influx Cell Sorter (1)
IPK PhenoSphere (1)
Tapestri Platform (1)
10X chemistry 3' v3 (1)
STAR v2.5.3a, rpkmforgenes, RSeQC 2.6.1 (1)
Illumina Nextera XT index kits (Set A–D) (1)
Oligo(dT) primer and SuperScript II reverse transcriptase (ThermoFisher Scientific), TapeStation 4200 or 2100 Bioanalyzer with a DNA High Sensitivity chip (Agilent Biotechnologies) (1)
Aria III (BD Biosciences) (1)
PromethION (1)
Affymetrix GeneChip Scanner (1)
Microarray scanner system (1)

Publication Date

2010 (120)
2013 (100)
2012 (90)
2015 (88)
2014 (86)
2011 (61)
2016 (50)
2009 (46)
2008 (44)
2022 (38)
2023 (31)
2007 (31)
2026 (30)
2020 (28)
2025 (27)
2006 (27)
2021 (26)
2005 (26)
2024 (25)
2019 (21)
2018 (21)
2017 (15)
2003 (2)
2004 (1)

UNIPROT ID/AC

1433B_HUMAN (5)
1433E_HUMAN (5)
1433F_HUMAN (5)
1433G_HUMAN (5)
1433S_HUMAN (5)
1433T_HUMAN (5)
1433Z_HUMAN (5)
2A5A_HUMAN (5)
2A5B_HUMAN (5)
2A5D_HUMAN (5)
2A5E_HUMAN (5)
2A5G_HUMAN (5)
2AAA_HUMAN (5)
2AAB_HUMAN (5)
2ABA_HUMAN (5)
2ABD_HUMAN (5)
3BHS1_HUMAN (5)
3BHS2_HUMAN (5)
3BP1_HUMAN (5)
3BP2_HUMAN (5)
3BP5L_HUMAN (5)
3HAO_HUMAN (5)
3HIDH_HUMAN (5)
3MG_HUMAN (5)
41_HUMAN (5)
4EBP1_HUMAN (5)
4EBP2_HUMAN (5)
4ET_HUMAN (5)
4F2_HUMAN (5)
5NT3A_HUMAN (5)

CHEBI ID

CHEBI:15428 (12)
CHEBI:27897 (11)
CHEBI:28044 (10)
CHEBI:16919 (10)
CHEBI:15354 (10)
CHEBI:17368 (10)
CHEBI:30769 (10)
CHEBI:18237 (9)
CHEBI:16040 (9)
CHEBI:15741 (9)
CHEBI:17154 (9)
CHEBI:15891 (9)
CHEBI:16737 (9)
CHEBI:17596 (9)
CHEBI:18089 (9)
CHEBI:16811 (8)
CHEBI:16708 (8)
CHEBI:17268 (8)
CHEBI:30746 (8)
CHEBI:16335 (8)
CHEBI:17568 (8)
CHEBI:17509 (8)
CHEBI:16449 (8)
CHEBI:30915 (8)
CHEBI:16643 (8)
CHEBI:18344 (8)
CHEBI:28238 (7)
CHEBI:17822 (7)
CHEBI:26271 (7)
CHEBI:25094 (7)

Metabolite Name

L-Proline (8)
Creatine (8)
L-Valine (8)
Inosine (8)
7-Methylguanine (7)
Taurine (7)
Uridine (7)
L-Phenylalanine (7)
L-Alanine (6)
Adenosine (6)
L-Glutamine (6)
Adenine (6)
Cytidine (6)
Guanosine (6)
L-Methionine (6)
L-Tyrosine (6)
Hypoxanthine (6)
AMP (5)
Thymine (5)
L-Lysine (5)
Daidzein (5)
L-Arginine (5)
L-Threonine (5)
Pyridoxine (5)
Cholesterol (5)
Guanine (5)
Cytosine (5)
L-Tryptophan (5)
Dodecanoic acid (5)
L-Serine (5)

First Public Date

2026 (6)
2024 (6)
2023 (5)
2025 (4)
2022 (3)
2020 (3)
2019 (3)
2018 (3)
2021 (2)
2015 (2)
2014 (2)
2013 (2)
2016 (1)

Classification

bacteria (2)

Study status

Recruiting (1)
Completed (1)

Study type

Transcription profiling by array (413)
RNA-seq of coding RNA (208)
ChIP-seq (84)
Methylation profiling by high throughput sequencing (27)
RNA-seq of coding RNA from single cells (26)
ChIP-chip by tiling array (23)
RNA-seq of non coding RNA (22)
Other (20)
ChIP-chip by array (13)
DNA-seq (13)
Comparative genomic hybridization by array (12)
RNA-seq of total RNA (12)
Unknown experiment type (10)
Methylation profiling by array (8)
Genotyping by array (7)
Cell line - High-throughput sequencing (5)
MicroRNA profiling by array (5)
Spatial transcriptomics by high-throughput sequencing (4)
High-throughput sequencing (3)
MicroRNA profiling by high throughput sequencing (3)
Genotyping by high throughput sequencing (3)
Transcription profiling by tiling array (2)
ATAC-seq (2)
Ribo-seq (2)
Single nucleus RNA sequencing (2)
Transcription profiling by MPSS (1)
Differential (1)
Human - Two-color microarray (1)
Tiling path by array (1)
Animal - One-color microarray (1)

Release Date

2010 (121)
2013 (102)
2012 (94)
2015 (93)
2014 (89)
2022 (75)
2011 (63)
2023 (60)
2016 (58)
2021 (51)
2020 (51)
2025 (48)
2009 (46)
2008 (45)
2024 (43)
2019 (36)
2018 (35)
2007 (31)
2006 (28)
2005 (25)
2026 (24)
2017 (20)
2003 (2)
2004 (1)

Lab affiliation

Department of Ecogenomics and Systems Biology, University of Vienna, Althanstrasse 14, 1090 Vienna, Austria (2)
1. Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands 2. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, The Netherlands (1)
Center for Electronic, Optoelectronic and Telecommunications (CEOT), Universidade do Algarve, Faro, Portugal (1)
Departamento de Ciências Biológicas, Laboratório de Enzimologia e Proteômica, Universidade Federal de Ouro Preto, Brazil (1)
Department of Medical Genetics, Cambridge Institute for Medical Research, The Keith Peters Building, Cambridge Biomedical Campus, Hills Road, Cambridge CB2 0XY, United Kingdom (1)
Department of Pathology, University of Michigan, 1150 W Medical Center Dr, 7510D MSRB1, Ann Arbor, MI, 48109. (1)
Immunology,College of Medicine and Public Health, Flinders University (1)
Institute for Genetics, CECAD Research Center, University of Cologne (1)
Institute for Molecular Bioscience, The University of Queensland, Brisbane, QLD 4072, Australia. (1)
Institute of Bioinformatics, 7th floor, Discoverer Building, International Tech Park, Bangalore, 560 066, India (1)
Key Laboratory of Plant Germplasm Enhancement and Speciality Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuchang Moshan (1)
Laboratory of Biopolymer Structure, Intercollegiate Faculty of Biotechnology UG-MUG, University of Gdansk, Gdansk, Poland (1)
Proteomics Unit Navarrabiomed-Proteored-ISCIII (Pamplona, Spain) (1)
SULFAGING group, Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. DORTMUND Germany (1)
University of Milan, DISFARM (1)

Location

Germany (1)
United Kingdom (1)
Switzerland (1)

Keyword

Lonsurf (1)

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Improved multi-trait prediction of wheat end-product quality traits by integrating NIR-predicted phenotypes.

Not available

S-EPMC10233148 | biostudies-literature

Metabolomics-Based Study of the Effect of Raw Materials to the End Product of Tempe-An Indonesian Fermented Soybean.

Not available

S-EPMC7569771 | biostudies-literature

Using RT-qPCR, proteomics and microscopy to unravel the spatio-temporal expression and subcellular localization of hordoindolines across development in barley endosperm

Hordeum vulgare (barley) hordoindolines (HINs), HINa, HINb1 and HINb2, are orthologous proteins of wheat puroindolines (PINs) that are small, basic, cysteine-rich seed-specific proteins and responsible for grain hardness. Grain hardness, is, next to its protein content, a major quality trait. In ba...

ORGANISM(S): Hordeum vulgare (Barley)

2018-07-02 | PXD009708 | Pride

Multivariate Analysis of the Determinants of the End-Product Quality of Manure-Based Composts and Vermicomposts Using Bayesian Network Modelling.

Not available

S-EPMC4912064 | biostudies-literature

RNA-seq of muscle from pigs divergent in feed efficiency and product quality

Feed efficiency (FE) is an indicator of efficiency in converting energy from feed into a tissue that is of major environmental and economic significance.This study was to profile the porcine Longissimus thoracis et lumborum (LTL) muscle transcriptome, examine the product quality from pigs divergent ...

ORGANISM(S): Sus scrofa

2018-10-10 | E-MTAB-6174 | biostudies-arrayexpress

Anaerobic Degradation of N-ε-Carboxymethyllysine, a Major Glycation End-Product, by Human Intestinal Bacteria.

Not available

S-EPMC6566499 | biostudies-literature

Predicting T-cell quality during manufacturing through an artificial intelligence-based integrative multiomics analytical platform.

Not available

S-EPMC9115702 | biostudies-literature

Does Late Maturity Alpha-Amylase Impact Wheat Baking Quality?

Not available

S-EPMC6137811 | biostudies-literature

Transcription profiling validation of an custom mouse oligo array using liver samples following treatment with the hepatotoxin phenobarbital and variable hybridization protocols

The use of custom-made focused microarrays has become a popular alternative, allowing the study of genes relevant to a specific hypothesis. To address the limitations of commercial arrays in toxicogenomics investigations, we have developed a custom mouse oligonucleotide microarray, the HC ToxArrayTM...

ORGANISM(S): Mus musculus

2006-10-30 | E-MEXP-525 | biostudies-arrayexpress

On-demand manufacturing of clinical-quality biopharmaceuticals.

Not available

S-EPMC6443493 | biostudies-literature

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