extracellular matrix remodeling

Show results for

Unknown (4039)
Genomics (979)
Transcriptomics (925)
Proteomics (242)
Other (39)
Metabolomics (8)
Methylation profiling (4)
Models (2)
Multiomics (2)

Organisms

Homo sapiens (497)
Mus musculus (460)
Rattus norvegicus (61)
Danio rerio (15)
Bos taurus (14)
Sus scrofa (7)
Canis lupus familiaris (5)
Gallus gallus (4)
Ovis aries (4)
Bos indicus (3)
Oncorhynchus mykiss (3)
synthetic construct (3)
Salmo salar (2)
Caenorhabditis elegans (2)
Drosophila melanogaster (2)
Sus scrofa domesticus (2)
Ambystoma mexicanum (2)
Acomys cahirinus (2)
Cavia porcellus (2)
Equus caballus (2)
Macaca mulatta (2)
Mus (2)
Allium cepa (1)
Schizosaccharomyces pombe (1)
Saccharomyces cerevisiae (1)
Arabidopsis thaliana (1)
Crocodylus moreletii (1)
Betapolyomavirus macacae (1)
human gammaherpesvirus 4 (1)
JC polyomavirus (1)

Organisms

Homo sapiens (354)
Mus musculus (344)
Rattus norvegicus (35)
Danio rerio (13)
Bos taurus (8)
Sus scrofa (6)
Ovis aries (4)
Canis lupus familiaris (4)
Ranunculus penicillatus (2)
Cavia porcellus (2)
Ambystoma mexicanum (2)
Oncorhynchus mykiss (2)
Mus (2)
Equus caballus (2)
Gallus gallus (2)
Sus scrofa domesticus (2)
Crocodylus moreletii (1)
Acomys cahirinus (1)
Potamogeton nodosus (1)
Macaca fascicularis (1)
Nothobranchius furzeri (1)
Mammalia (1)
Oryctolagus cuniculus (1)
Candidozyma auris (1)
Macaca mulatta (1)
Salmo salar (1)

Repository

ENA (896)
geo (815)
biostudies-arrayexpress (232)
pride (169)
MassIVE (32)
iProX (25)
jPOST (8)
MetaboLights (6)
EGA (5)
PanoramaPublic (3)
BioModels (2)
GNPS (2)
GPMDB (2)
PAXDB (2)
PeptideAtlas (1)

Tissue

Heart (28)
Cell culture (19)
Lung (16)
Brain (13)
Fibroblast (13)
Epithelial cell (11)
Blood plasma (7)
Stem cell (5)
Colon (4)
Macrophage (4)
Cardiac muscle cell (3)
Pancreas (3)
Placenta (3)
Primary cell (3)
Skin (3)
Aorta (2)
Keratinocyte (2)
Kidney (2)
Mesenchymal cell (2)
Muscle (2)
Myoblast cell line (2)
Retina (2)
Spleen (2)
Tail (2)
Tendon (2)
Thyroid gland (2)
Others (1)
Adipocyte (1)
IMR-90 cell (1)
Muller cell (1)

Disease

Myocardial ischemia (7)
Cardiovascular system disease (6)
Breast cancer (5)
Disease free (4)
Wounds and Injuries (4)
Aortic valve stenosis (3)
Colon cancer (3)
Malignant neoplasm of ovary (3)
Normal (2)
Not Available (2)
Chronic obstructive pulmonary disease (2)
Glioblastoma (2)
Osteoarthritis (2)
Pancreatic ductal adenocarcinoma (2)
Type 2 diabetes mellitus (2)
Aortic aneurysm (1)
Dystrophic (1)
Cirrhosis (1)
Acute leukemia (1)
Alzheimer's disease (1)
Atrial fibrillation (1)
Brain cancer (1)
Crohn's disease (1)
Diabetic retinopathy (1)
Dilatation of the ascending aorta (1)
Graft-versus-host disease (1)
Head and neck cancer (1)
Heart failure (1)
Hypertension (1)
Idiopathic pulmonary fibrosis (1)

Technology Type

Mass Spectrometry (169)
Shotgun proteomics (85)
Bottom-up proteomics (38)
Data-independent acquisition (25)
Data-dependent acquisition (23)
SWATH MS (10)
Gel-based experiment (7)
Top-down proteomics (4)
Mass spectrometry assay (3)
Mass spectrometry (3)
Affinity purification coupled with mass spectrometry proteomics (3)
MSE (2)
All-ion fragmentation (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Illumina NovaSeq 6000 (7)
Orbitrap Fusion Lumos (5)
Q Exactive (5)
Illumina HiSeq 2500 (3)
Illumina HiSeq 4000 (3)
TimsTOF fleX (3)
NextSeq 2000 (2)
Q Exactive HF (2)
Instrument (2)
LTQ Orbitrap Elite (2)
Orbitrap Eclipse (2)
Orbitrap Exploris 480 (2)
Orbitrap Fusion (2)
Q Exactive HF-X (2)
TimsTOF Pro (2)
LTQ Orbitrap XL (2)
Genomics Core Shared Resources at Augusta University (RRID: SCR_026483) (1)
RNeasy Mini Kit (Qiagen) (1)
GentleMACS Octo Dissociator with Heaters (Miltenyi Biotec, Cat. No. 130-096-427) together with the Human Tumor Dissociation Kit (Miltenyi Biotec, Cat. No. 130-095-929), (1)
10x Chromium (1)
GenePix 4000A [Axon Instruments] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina NovaSeq X (1)
Illumina HiSeq 1500 (1)
Impact (1)
NanoACQUITY UPLC (1)
Q Exactive GC Orbitrap (1)
Q Exactive Plus (1)
QE+ (1)
Synapt G2 HDMS (1)

Publication Date

2026 (298)
2025 (190)
2024 (90)
2023 (75)
2022 (75)
2020 (59)
2021 (59)
2016 (47)
2015 (43)
2019 (38)
2018 (36)
2013 (36)
2011 (35)
2010 (33)
2008 (32)
2012 (30)
2014 (29)
2007 (25)
2017 (20)
2009 (13)
2006 (11)
2005 (7)
2004 (1)

UNIPROT ID/AC

P05121 (1)
Q969D9 (1)
P13501 (1)
P42768 (1)
Q13480 (1)
P22692 (1)
P53779 (1)
P17936 (1)
Q8WU20 (1)
P10398 (1)
Q9BXX0 (1)
Q9NXG6 (1)
P11487 (1)
P13725 (1)
P08620 (1)
P15036 (1)
Q15746 (1)
P15514 (1)
P21781 (1)
P63261 (1)
P68032 (1)
P60709 (1)
P04004 (1)
Q9Y5S2 (1)
Q5VT25 (1)
P01583 (1)
O75116 (1)
P42830 (1)
P12644 (1)
P14921 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:30413 (1)
CHEBI:75195 (1)
CHEBI:138553 (1)
CHEBI:138554 (1)
CHEBI:74240 (1)
CHEBI:72072 (1)
CHEBI:72076 (1)
CHEBI:91073 (1)
CHEBI:72065 (1)
CHEBI:72059 (1)
CHEBI:143617 (1)
CHEBI:143618 (1)
CHEBI:91065 (1)
CHEBI:72064 (1)
CHEBI:138909 (1)
CHEBI:74375 (1)
CHEBI:72058 (1)
CHEBI:72087 (1)
CHEBI:72086 (1)
CHEBI:72079 (1)
CHEBI:72073 (1)
CHEBI:72068 (1)
CHEBI:75194 (1)
CHEBI:91040 (1)
CHEBI:74372 (1)
CHEBI:72080 (1)
CHEBI:74238 (1)
CHEBI:91036 (1)
CHEBI:74371 (1)
CHEBI:74241 (1)

Metabolite Name

Gln-Ile-His (2)
Agar (2)
Bisnoryangonin (2)
Cys-Arg-Glu-Lys-Ala (2)
Urceolide (2)
Deoxyinosine (2)
Cytidine (2)
Alpha-Linolenic Acid (2)
Geldanamycin (2)
PI(39:6) (1)
PS(36:0) (1)
Naorn(26:5/13:1) (1)
(S)-2-Tert-Butoxycarbonylamino-5-Guanidinopentanoic Acid (1)
Xanthotoxol Arabinoside (1)
6-Methylthioguanosine Monophosphate (1)
5-Chloro-2-[(3S)-1-(3,4-Difluorobenzyl)-3-Pyrrolidinyl]-1,3-Benzoxazole (1)
N-Hydroxy-2-(2-Thienylthio)Ethanimidamide (1)
N-[(3,5-Difluorophenyl)Methyl]-2-(3-Phenylpiperazin-1-Yl)Pyridine-4-Carboxamide (1)
5-Chloro-6-Methoxymellein (1)
L-Hexahydro-3-Imino-1,2,4-Oxadiazepine-3-Carboxylic Acid (1)
3-[3,5-Bis(Trifluoromethyl)Phenyl]-N'-Hydroxyprop-2-Enimidamide (1)
1-[4-([1,3]Oxazolo[5,4-B]Pyridin-2-Yl)-1,4-Diazepan-1-Yl]-2-Phenylpropan-1-One (1)
9-Methylchromeno[4,3-B]Quinolin-6-One (1)
5-(3-Fluorophenyl)-3-[1-[(3-Fluorophenyl)Methyl]Triazol-4-Yl]-1,2,4-Oxadiazole (1)
N-(2-Aminobenzoyl)Alanine (1)
Sesamolinol 4'-O-B-D-Glucosyl (1->6)-O-B-D-Glucoside (1)
Tyr Trp Leu (1)
4-{5-[(3S)-1-Isopropyl-3-Pyrrolidinyl]-1,3,4-Oxadiazol-2-Yl}Pyridine (1)
Ser Leu Trp (1)
5-Amino-2-(1,3-Dioxooctahydro-2H-4,7-Methanoisoindol-2-Yl)-5-Oxopentanoic Acid (1)

First Public Date

2026 (288)
2025 (164)
2024 (89)
2014 (71)
2023 (64)
2022 (53)
2021 (41)
2020 (37)
2019 (25)
2018 (19)
2015 (18)
2017 (13)
2016 (12)
2013 (2)

Modelling Approach

Boolean model (1)
Ordinary differential equation model (1)

Lab affiliation

King's College London (6)
Boston University School of Medicine (2)
Cardiology (2)
Institute of Molecular Medicine and Experimental Immunology, BMZ-II, Building 12, University Hospital Bonn (2)
King's College London - Cardiovascular Division (2)
Laboratory of Orthopedic Biomechanics, ETH Zurich (Department of Health Sciences and Technology) and University of Zurich (Medical Faculty) (2)
Leibniz Institute on Aging, Fritz Lipmann Institute, Beutenbergstrasse 11, 07745 Jena, Germany (2)
Proteomics, Leibniz-Institut für analytische Wissenschaften -ISAS - e.V., Germany (2)
The Scripps Research Institute (2)
The University of Melbourne (2)
Weizmann Institute of Science (2)
1. Gene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Munich, Germany 2. Research group Molecular Mechanisms of Inflammation, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
138 Tongzipo Road,Changsha,Hunan,P.R.China (1)
1Institute of Lung Health and Immunity, Comprehensive Pneumology Center Munich with the CPC-M bioArchive, Helmholtz Center Munich, Research Center for Environmental Health, Member of the German Center of Lung Research (DZL), Germany (1)
Affiliated Hospital of Nanjing University of Chinese Medicine (1)
All India Institute of Medical Sciences, New Delhi, India (1)
Associate Professor Director of Proteomics and Mass Spectrometry Facility School of Biological Sciences Nanyang Technological University 60 Nanyang Drive, Singapore 637551 Tel: (65) 6514-1006; Fax: (65) 6791-3856 Email: sksze@ntu.edu.sg Web: http://proteomics.sbs.ntu.edu.sg/ (1)
Binzhou Medical University (1)
Bio-molecular sciences, The Weizmann Institue of Science, Israel (1)
BoRdeaux Institute of onCology (BRIC) UMR1312 Inserm / Université de Bordeaux Team 3 Liver cancers and invasion 146 rue Léo Saignat 33076 Bordeaux, France (1)
Bowling Green State University (1)
CENTD, Instituto Butantan (1)
Cedars-Sinai Medical Center, Heart Institute, Los Angeles, CA. United States of America (1)
Cell Technologies Center, Institute of Cytology RAS,St. Petersburg, Russia (1)
Cellzome GmbH, a GSK company (1)
Center for Musculoskeletal Research, Department of Orthopaedics & Rehabilitation, University of Rochester Medical Center, Rochester, NY, 14642 Department of Biomedical Engineering, University of Rochester, Rochester, NY, 14627 (1)
Center of Regenerative Medicine in Barcelona (CMRB) (1)
Center of Regenerative Medicine in Barcelona (CMRB) 3rd Floor Hospital Duran i Reynals Avinguda de la Gran Via, 199-203 08908 Hospitalet de Llobregat (Barcelona), Spain (1)
Centro Cardiovascular da Universidade de Lisboa (CCUL@RISE), Faculdade de Medicina da Univer-sidade de Lisboa, Portugal (1)
Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain; Centro de Biología Molecular Severo Ochoa, CSIC-UAM, Madrid, Spain. (1)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Submitter Keywords

Not Peer Reviewed (1)

Classification

fungi (1)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (181)
RNA-seq of coding RNA (17)
ChIP-seq (9)
RNA-seq of coding RNA from single cells (6)
Unknown experiment type (5)
Other (3)
Methylation profiling by array (3)
Transcription profiling by SAGE (2)
RNA-seq of non coding RNA (2)
MNase-seq (1)
ChIP-chip by tiling array (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (634)
2023 (419)
2022 (411)
2024 (363)
2021 (356)
2020 (332)
2019 (242)
2018 (209)
2017 (176)
2016 (174)
2015 (163)
2026 (136)
2014 (102)
2013 (100)
2011 (93)
2012 (89)
2010 (79)
2008 (60)
2009 (50)
2007 (39)
2006 (12)
2005 (11)
2004 (7)
2002 (5)
2003 (3)
2000 (2)
1999 (1)
1998 (1)
1997 (1)

Previous page
1 / 624
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 624
Next page

Sort by:

Relevance

Page size

Extracellular matrix proteome remodeling with substrate stiffness

Extracellular matrix proteomic profiling Mass spectrometry characterization illustrated a reprogrammed proteome in response to matrix stiffness, including a core subset of 84 ECM-specific proteins, including various ECM regulators and tissue-associated ECM-related proteins. Further, we observe remod...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

MSV000092971 | MassIVE

Developmental and extracellular matrix-remodeling processes in rosiglitazone-exposed neonatal rat cardiomyocytes_TS

The objective of this study was to investigate the effects of rosiglitazone (Avandia) on gene expression in neonatal rat ventricular myocytes. Myocytes were exposed to rosiglitazone ex vivo. The two factors examined in the experiment were drug exposure (r

ORGANISM(S): Rattus norvegicus

2015-02-21 | E-MTAB-2426 | biostudies-arrayexpress

Specific extracellular matrix remodeling signature of colon hepatic metastases

To identify genes implicated in metastatic colonization of the liver in colorectal cancer, we collected pairs of primary tumors and hepatic metastases before chemotherapy in 13 patients. We compared mRNA expression in the pairs of patients to identify genes deregulated during metastatic evolution. W...

ORGANISM(S): Homo sapiens

2013-09-01 | E-GEOD-49355 | biostudies-arrayexpress

Targeted proteomic and bioinformatic investigation of extracellular matrix remodeling in hAEC-EV-mediated corneal repair

Human amniotic epithelial cell-derived extracellular vesicles (hAEC-EVs) have shown therapeutic potential in corneal injury repair; however, the underlying molecular mechanisms, particularly those related to extracellular matrix (ECM) remodeling, remain incompletely understood.

ORGANISM(S): Oryctolagus Cuniculus

2026-03-11 | PXD075526 |

Specific extracellular matrix remodeling signature of colon hepatic metastases [HG-U133B]

ORGANISM(S): Homo sapiens

2014-10-15 | E-GEOD-62321 | biostudies-arrayexpress

Secretome of rat smooth muscle cells with stretch

The extracellular matrix (ECM) is fundamental to cellular and tissue structural integrity and provides mechanical cues to initiate diverse biological functions1. The quality and quantity of ECM determines tissue stiffness and controls gene expression, cell fate, and cell cycle progression in various...

ORGANISM(S): Rattus Rattus (black Rat)

2020-03-18 | PXD013915 | JPOST Repository

Proteomic and degradomic signatures of extracellular matrix remodeling in calcific aortic valve

Calcific aortic valve disease (CAVD) is the most common valvular heart disease in older adults, but no medical therapy is currently able to halt or reverse its progression, partly because the molecular mechanisms of valve remodeling remain incompletely understood. Here, we aimed to dissect the extra...

ORGANISM(S): Homo sapiens (Human)

2026-05-29 | PXD073246 | Pride

Extracellular matrix remodeling enhancing astrocyte lysosome pathway to reverse memory defected in Alzheimer’s disease

Extracellular matrix (ECM) remodeling is strongly linked to Alzheimer’s disease (AD) risk, but its functions are not fully understood. Here, we found that medial prefrontal cortex (mPFC) injection with chondroitinase ABC (ChABC) to remodel ECM reverses short-term memory loss and reduces Aβ depositio...

ORGANISM(S): Mus musculus (Mouse)

2024-10-17 | PXD046784 | Pride

Extracellular matrix remodeling Alzheimer's disease Astrocyte

Extracellular matrix remodeling regulates glucose metabolism through TXNIP destabilization

PRJNA414447 | ENA

Multiscale Analysis of Extracellular Matrix Remodeling in the Failing Heart

PRJNA649946 | ENA

Previous page
1 / 624
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 624
Next page

Sort by:

Relevance

Page size

6239 Results

Show results for

Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

Publication Date

UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

First Public Date

Modelling Approach

Lab affiliation

Tags

IsPrivate

Model Flag

Submitter Keywords

Classification

Modification

Study type

Release Date

OmicsDI is part of the ELIXIR infrastructure

Tweets