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UnknownThe fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum.
Not available
S-EPMC3382252 | biostudies-literature
TranscriptomicsThe Partitioning of RNAs in sperm
A diverse pool of RNAs remain encapsulated within the transcriptionally and translationally silent spermatozoon. These transcripts persist within the male gamete despite the dramatic reduction in cellular volume achieved through expulsion of the cytoplasm and quite possibly the nucleoplasm. The prec...
ORGANISM(S): Mus musculus 
2015-07-08 | E-GEOD-62874 | biostudies-arrayexpress
TranscriptomicsA user-friendly chromatographic method to purify small regulatory RNAs
The discovery of the small regulatory RNA populations has changed our vision of cellular regulations. Indeed, loaded on Argonaute proteins they formed ribonucleoprotein complexes that target complementary sequences and achieved widespread silencing mechanisms conserved in most eukaryotes. The recent...
ORGANISM(S): Drosophila melanogaster 
2013-06-13 | E-GEOD-40748 | biostudies-arrayexpress
UnknownCharacterization of fragmented mitochondrial ribosomal RNAs of the colorless green alga Polytomella parva.
Not available
S-EPMC140509 | biostudies-literature
TranscriptomicsSequencing of the non-ribosomal transcriptome allows the simultaneous identification of protein-coding and non-protein-coding RNAs
Deep Sequencing of protein-coding and non-protein-coding RNAs from mouse differentiated embryonic stem cells and 14.5dpc mouse fetal head Analysis of Ribominus RNA from mouse differentiated embryonic stem cells and 14.5dpc mouse fetal head There are no processed data files for GSM566806-GSM566811. ...
ORGANISM(S): Mus musculus 
2011-12-06 | E-GEOD-22959 | biostudies-arrayexpress
TranscriptomicsWidespread Co-translational RNA Decay Reveals Ribosome Dynamics
It is generally assumed that mRNAs undergoing translation are protected from decay. Here, we show that mRNAs are, in fact, co-translationally degraded. This is a widespread and conserved process affecting most genes, where 5′–3′ transcript degradation follows the last translating ribosome, producing...
ORGANISM(S): Schizosaccharomyces pombe 
2015-06-04 | E-GEOD-63120 | biostudies-arrayexpress
TranscriptomicsRibosomal RNA 2’-O-methylation profile of human articular chondrocytes exposed to an osteoarthritic environment
We used chondrocytes exposed to osteoarthritic synovial fluid as a chronic disease model to study the effects of a chronic disease microenvironment on 2’-O-me rRNA heterogeneity. Human non-OA human articular chondrocytes (5 individual donors) were cultured either in the presence of OA-SF (20% (v/v),...
ORGANISM(S): Homo sapiens 
2022-03-05 | E-MTAB-11469 | biostudies-arrayexpress
TranscriptomicsProtocol Dependence of Sequencing-based Gene Expression Measurements
RNA samples from human tissues (brain and liver) and cell lines (K562 and HL60) were used to assess RNA fragmentation, RNA fractionation, cDNA synthesis, and single versus multiple tag counting. Technical replicates and different cDNA synthesis protocols were compared. Though protocols employing p...
ORGANISM(S): Homo sapiens 
2011-03-24 | E-GEOD-28123 | biostudies-arrayexpress
UnknownSystematically fragmented genes in a multipartite mitochondrial genome.
Not available
S-EPMC3035467 | biostudies-literature
ProteomicsHow to make a ribosome from mixed-up ribosomal RNA fragments in Chlamydomonas reinhardtii mitochondria
Mitochondria are essential components of eukaryotic cells. They possess their own gene expression machineries where highly divergent and specialized ribosomes, named hereafter mitoribosomes, translate the few, although essential, mitochondrial messenger RNAs still encoded by mitochondrial genomes. H...
ORGANISM(S): Chlamydomonas reinhardtii 
2022-03-15 | PXD024708 | Pride
Mitochondria   mitochondrial ribosome   mitoribosome   chlamydomonas reinhardtii   cryo-em   cryo-et   fragmented ribosomal rnas 
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