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UnknownAnalysis and visualization of quantitative proteomics data using FragPipe-Analyst.
Not available
S-EPMC10942459 | biostudies-literature
UnknownFLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe.
Not available
S-EPMC10723326 | biostudies-literature
UnknownFLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Data Sets Built on FragPipe.
Not available
S-EPMC11590172 | biostudies-literature
UnknownAnalysis of isobaric quantitative proteomic data using TMT-Integrator and FragPipe computational platform.
Not available
S-EPMC12154698 | biostudies-literature
UnknownAnalysis of DIA proteomics data using MSFragger-DIA and FragPipe computational platform.
Not available
S-EPMC10338508 | biostudies-literature
ProteomicsFLiPPR: A Processor for Limited Proteolysis (LiP) Mass Spectrometry Datasets Built on FragPipe
Here, we present FLiPPR, or FragPipe LiP (limited proteolysis) Processor, a tool that facilitates the analysis of data from limited proteolysis mass spectrometry (LiP-MS) experiments following primary search and quantification in FragPipe. LiP-MS has emerged as a method that can provide proteome-wid...
ORGANISM(S): Bacillus cereus (strain ATCC 14579 / DSM 31) 
2024-05-24 | PXD047776 | Pride
Data processing Proteomics Limited proteolysis Bacillus cereus atcc 14579 Bacilli Mass spectrometry Bioinformatics Bottom-up Data 
UnknownQuantitative proteome-wide O-glycoproteomics analysis with FragPipe.
Not available
S-EPMC11648966 | biostudies-literature
ProteomicsExpanding glycopeptide identification with Match-Between-Glycans (MBG) in FragPipe
Glycosylation is one of the most important, but also most complex, post-translational modifications of proteins. Mass spectrometry-based glycoproteomics analysis offers a powerful approach to explore the fundamental roles of glycosylation, but achieving sufficient fragmentation for glycopeptide assi...
ORGANISM(S): Candida albicans (Yeast) Mus musculus (Mouse) Homo sapiens (Human) 
2026-09-01 | PXD074575 | Pride
Human plasma  glycoproteomics  n-glycopeptides  pasef  timstof  msfragger-glyco  fragpipe  ion mobility 
Unknowndia-PASEF data analysis using FragPipe and DIA-NN for deep proteomics of low sample amounts.
Not available
S-EPMC9270362 | biostudies-literature
UnknownEfficient Analysis of Proteome-wide FPOP Data by FragPipe.
Not available
S-EPMC10274679 | biostudies-literature
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