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MetabolomicsLipid Data Analyzer: Novel lipid species and identification of regio-isomeric lipid species (HCD characterization and regioisomer detection)
Lipid Data Analyzer (LDA; http://genome.tugraz.at/lda2) provides automated and reliable annotation of lipid species and their molecular structures in high-throughput data from chromatography-coupled tandem mass spectrometry using embedded rule sets. Using various low- and high-resolution mass spectr...
2017-11-07 | MTBLS462 | MetaboLights
MetabolomicsImpacts of high-fat diet (HFD), high-carbohydrate diet (HCD) and high-fat-high-carbohydrate diet (HFHCD) on metabolites in a farmed cyprinid fish Megalobrama amblycephala.
Not available
ORGANISM(S): Megalobrama amblycephala 
ST000487 | MetabolomicsWorkbench
TranscriptomicsTranscription profiling of Pseudomonas aeruignosa nutrient acquisition and pathogenesis in the cystic human fibrosis lung
One of the hallmarks of Pseudomonas aeruginosa cystic fibrosis (CF) infection is very high-cell-density (HCD) replication in the lung, allowing this bacterium to induce virulence controlled by HCD quorum-sensing systems. However, the nutrient sources sustaining HCD replication in this chronic infec...
ORGANISM(S): Pseudomonas aeruginosa 
2008-06-15 | E-GEOD-7704 | biostudies-arrayexpress
ProteomicsIn-source CID improves HCD-dependent fragmentation of ADP-ribosyl peptides
ADP-ribosylation is a posttranslational modification whose HCD products are dominated by complete or partial modification losses, complicating peptide sequencing and acceptor site localization efforts. We tested whether in-source CID performed on a quadrupole Orbitrap could convert ADPr to the small...
ORGANISM(S): Homo sapiens (Human) 
2024-12-05 | PXD055586 | Pride
Sid Proteomics Hcd Exploris480 Adp-ribosylation 
TranscriptomicsThe effect of Lats2 knockout and diet on liver disease in mice
Liver samples of mice harboring liver-specific deletion of Lats2 (Lats2-CKO) were compared to WT mice. This effect was tested along with the effect of diet - high cholesterol diet (Paigen-PD) vs. normal chow (ND). Expression array analysis on Affymetrix microarrays was carried out for livers from WT...
ORGANISM(S): Mus musculus 
2016-03-17 | E-GEOD-68824 | biostudies-arrayexpress
GenomicsRNA-seq data for tumor tissues from mice fed with normal diet (ND) or high cholesterol diet (HCD)
RNA-seq data for tumor tissues from mice fed with normal diet (ND) or high cholesterol diet (HCD)
PRJNA412776 | ENA
GenomicsRNA-seq data for tumor tissues from mice fed with normal diet (ND) or high cholesterol diet (HCD) [Hep1-6]
RNA-seq data for tumor tissues from mice fed with normal diet (ND) or high cholesterol diet (HCD) [Hep1-6]
PRJNA512625 | ENA
ProteomicsCellular ADP-ribosylome characterization with HCD and EThcD
Protein ADP-ribosylation is a post-translational modification involved in important physiological and pathological processes. Here, we present an optimized method using the Orbitrap Fusion Tribrid mass spectrometer, which drastically improves the overall ADP-ribosylation site localization score and ...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2016-07-28 | MSV000080008 | MassIVE
UnknownRDD-HCD Provides Variable Fragmentation Routes Dictated by Radical Stability.
Not available
S-EPMC9982999 | biostudies-literature
GenomicsEffect of High Cholesterol Diet (HCD) on B cell subsets in atheroprone mice with or without myb deficiency
Effect of High Cholesterol Diet (HCD) on B cell subsets in atheroprone mice with or without myb deficiency
PRJNA531403 | ENA
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