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ProteomicsPhytophthora detection in planta
Phytophthora is arguably one of the most damaging genera of plant pathogens and is recognized as a threat to a broad spectrum of plant species. This pathogen is well suited to transmission via the international plant trade, and globalization has been promoting its spread since the 19th century. Earl...
ORGANISM(S): Solanum tuberosum (Potato) Hordeum vulgare (Barley) 
2020-12-15 | PXD022569 | Pride
P. palmivora Proteomics P. infestans Hordeum vulgare Solanum tuberosum Phytophthora 
ProteomicsIn planta transcriptome and proteome profiles of Spongospora subterranea illuminates regulatory principles underlying host-pathogen interaction
Spongospora subterranea is an obligate biotrophic pathogen, causing a tremendous economic loss in the potato industry. Currently, there are no effective chemical or biological strategies for the control of S. subterranea. Understanding the gene regulation of pathogens in their host is dependent on m...
ORGANISM(S): Spongospora subterranea 
2022-02-17 | PXD027266 | Pride
Spongospora subterranea  potato  in planta analysis  transcriptomics  proteomics 
ProteomicsIn planta chemical crosslinking and mass spectrometry analysis of protein structure and interaction in Arabidopsis
Mass spectrometry analysis in combination with the site-specific chemical cross-linking has emerged as a powerful method in study of three-dimensional structure of protein complex and in mapping of protein-protein interactions (PPIs). Even though in vitro cross-linking experiments have been widely a...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2016-06-28 | PXD003658 | Pride
Arabidopsis Mass spectrometry Disuccinimidyl suberate In planta chemical cross-linking Interactomics Exhaustive cross-linked peptides identification tool 
MetabolomicsDeep longitudinal multi-omics analysis of Bordetella pertussis cultivated in bioreactors highlights medium starvations and transitory metabolisms, associated to vaccine antigen biosynthesis variations and global virulence regulation

Bordetella pertussis is the bacterial causative agent of whooping cough, a serious respiratory illness. An extensive knowledge on its virulence regulation and metabolism is a key factor to ensure pertussis vaccine manufacturing process robustness. The aim of this study was to refine our ...

2023-02-21 | MTBLS5762 | MetaboLights
ProteomicsPseudomonas syringae effector HopZ3 suppresses PTO immune pathway in tomato by acetylation
The plant pathogen Pseudomonas syringae secretes multiple effectors to suppress plant defenses. Some effectors are recognized by plants while others can function to suppress the resulting immune responses. HopZ3 of Psy B728a is an aminotransferase targeting multiple components of both plant immune ...
ORGANISM(S): Pseudomonas syringae pv. syringae 
2021-10-18 | PXD022953 | Pride
Lc-msms Ptms Q-exactive Pto Hopz3 Plant effectors Acetylation Phosphorylation 
TranscriptomicsTranscription profiling of M.graminicola between growth in vitro and late-stage infection in planta
Comparison of gene expression in M.graminicola between growth in vitro and late-stage infection in planta.
ORGANISM(S): Mycosphaerella graminicola 
2006-02-28 | E-MEXP-523 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Pectobacterium atrosepticum wild and ExpI mutants to determine the quorum sensing regulon
Genome-wide in planta determination of the quorum sensing regulon in Pectobacterium atrosepticum, through gene expression analysis of ExpI mutants using Agilent custom microarrays.
ORGANISM(S): Pectobacterium atrosepticum 
2008-07-01 | E-TABM-384 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Ralstonia solanacearum strain GMI1000 at 20°C and 28°C in rich medium (CPG) and in planta
Investigation of whole genome gene expression level changes in the bacterial wilt pathogen Ralstonia solanacearum, strain GMI1000 at 20°C and 28°C in culture and in planta. The tropical strain GMI1000 cannot wilt tomato plants at 20°C although it can cause full-blown disease at 28°C. A 16 array stu...
ORGANISM(S): Ralstonia solanacearum GMI1000 
2012-01-15 | E-GEOD-33657 | biostudies-arrayexpress
TranscriptomicsExpression analysis of Ralstonia solanacearum strain UW551 at 20°C and 28°C in rich medium (CPG) and in planta
Investigation of whole genome gene expression level changes in the bacterial wilt pathogen Ralstonia solanacearum, strain UW551 at 20°C and 28°C in culture and in planta. The temperatel strain UW551 can wilt and cause full-blown disease on tomato plants at 28°C as well as at 20°C. A 16 array study ...
ORGANISM(S): Ralstonia solanacearum UW551 
2012-01-15 | E-GEOD-33661 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of in planta condition-dependent genes in Xanthomonas oryzae pv. oryzae KACC10331
Xanthomonas oryzae pv. oryzae (Xoo) causes the bacterial leaf blight of rice, which leads to as much as 50% yield losses. To understand the landscape of virulence mechanisms, we constructed in planta transcriptional profiling of Xoo KACC10331 using RNA-seq. Three in planta transcriptome of Xoo KACC1...
ORGANISM(S): Xanthomonas oryzae pv. oryzae KACC 10331 
2022-11-13 | GSE89651 | GEO
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