matrix-metalloproteinases

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Unknown (2836)
Transcriptomics (260)
Genomics (160)
Proteomics (42)
Models (6)
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Clinical (3)
Methylation profiling (1)
Other (1)

Organisms

Homo sapiens (144)
Mus musculus (87)
Rattus norvegicus (19)
Danio rerio (10)
Pimephales promelas (4)
Ambystoma mexicanum (3)
Oryctolagus cuniculus (3)
Aspergillus fumigatus (2)
Penaeus monodon (2)
Canis lupus familiaris (2)
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human gammaherpesvirus 4 (1)
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Betapolyomavirus hominis (1)
Human alphaherpesvirus 1 (1)
Human gammaherpesvirus 8 (1)
Murid gammaherpesvirus 4 (1)
Murid betaherpesvirus 1 (1)
Human immunodeficiency virus 1 (1)
Human betaherpesvirus 5 (1)
synthetic construct (1)

Organisms

Homo sapiens (69)
Mus musculus (51)
Danio rerio (4)
Rattus norvegicus (4)
Oryctolagus cuniculus (2)
Ambystoma mexicanum (2)
Branchiostoma japonicum (1)
Mus (1)
Penaeus monodon (1)
Canis lupus familiaris (1)
Sus scrofa (1)
Saccharomyces cerevisiae (1)

Repository

ENA (149)
geo (135)
biostudies-arrayexpress (132)
pride (24)
MassIVE (8)
BioModels (6)
EGA (6)
iProX (5)
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jPOST (3)
PanoramaPublic (2)

Tissue

Cell culture (3)
Epithelial cell (3)
Skin (2)
Aorta (1)
Articular cartilage (1)
Blood (1)
Bone (1)
Brain (1)
Cell line cell (1)
Cerebral gray matter (1)
Chondrocyte (1)
Culture condition: dark grown cells (1)
Fascia (1)
Fibroblast (1)
Heart (1)
Keratinocyte (1)
Kidney (1)
Leaf (1)
Liver (1)
Macrophage (1)
Monocyte (1)
Osteoblast (1)

Disease

Normal (3)
Colorectal Neoplasms (2)
Osteoarthritis (2)
Cartilage disease (1)
Pneumococcal meningitis (1)
Glioblastoma (1)
Unstable atherosclerotic plaque region (1)
Colorectal cancer (1)
Atherosclerosis (1)
Breast cancer (1)
Colon cancer (1)
Influenza (1)
Lung cancer (1)
Multiple sclerosis (1)
Plantar fascial fibromatosis (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (24)
Shotgun proteomics (14)
Bottom-up proteomics (4)
Data-dependent acquisition (4)
Mass spectrometry assay (3)
Gel-based experiment (3)
Mass spectrometry (2)
Illumina MiSeq, Illumina Genome Analyzer IIx (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)

Instrument Platform

Q Exactive Plus (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Liquid Chromatography MS - negative - reverse-phase (2)
GeneChip® HT HG-U133+ PM 24-Array Plate (Affymetrix); GeneTitan (Affymetrix) (1)
SensationPlus kit (Affymetrix) (1)
RNeasy Mini Kit (Qiagen); Nanodrop 1000 Spetrophotometer (Thermo Scientific); Agilent 2100 Bioanalyzer (Agilent Technologies) (1)
Affymetrix GeneChip Scanner 3000 7G (1)
Illumina NovaSeq X (1)
HiSeq X Ten (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Velos (1)
LTQ Orbitrap XL (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion (1)
Q Exactive (1)
Q Exactive HF (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2012 (30)
2010 (30)
2025 (26)
2026 (22)
2013 (20)
2016 (18)
2015 (17)
2014 (16)
2009 (14)
2023 (14)
2019 (13)
2011 (13)
2021 (12)
2008 (12)
2024 (10)
2022 (10)
2018 (9)
2017 (9)
2007 (7)
2020 (7)
2006 (5)
2005 (3)

UNIPROT ID/AC

P08047 (1)
Q99650 (1)
Q6PID9 (1)
P35625 (1)
O14522 (1)
Q9Y5Y6 (1)
P60510 (1)
O43187 (1)
Q9BY84 (1)
O75173 (1)
P13725 (1)
P01583 (1)
P45452 (1)
P03956 (1)
P02458 (1)
P01033 (1)
P08254 (1)
Q15759 (1)
Q9Y4K3 (1)
P14778 (1)
P05412 (1)
P01100 (1)
O14543 (1)
P40763 (1)
P28562 (1)
P45983 (1)
P23458 (1)

ENSEMBL ID

ENSG00000100234 (1)
ENSG00000102265 (1)
ENSG00000184557 (1)
ENSG00000137745 (1)
ENSG00000196611 (1)
ENSG00000177606 (1)
ENSG00000170345 (1)
ENSG00000158859 (1)
ENSG00000149968 (1)

CHEBI ID

CHEBI:16991 (1)
CHEBI:29081 (1)
CHEBI:192788 (1)
CHEBI:192787 (1)
CHEBI:192786 (1)
CHEBI:192785 (1)
CHEBI:192784 (1)
CHEBI:192783 (1)
CHEBI:192782 (1)
CHEBI:81299 (1)
CHEBI:166732 (1)
CHEBI:166731 (1)
CHEBI:183108 (1)
CHEBI:178065 (1)
CHEBI:139133 (1)
CHEBI:41131 (1)
CHEBI:166734 (1)
CHEBI:81256 (1)
CHEBI:139131 (1)
CHEBI:81240 (1)
CHEBI:52023 (1)
CHEBI:45133 (1)
CHEBI:37070 (1)
CHEBI:16312 (1)
CHEBI:88097 (1)
CHEBI:88104 (1)
CHEBI:138389 (1)
CHEBI:88108 (1)
CHEBI:139136 (1)
CHEBI:139138 (1)

Metabolite Name

(S)-Hexahydropyrrolo[1,2-a]pyrazine-1,4-dione (2)
Diisopropylamine (2)
1,10-Phenanthroline (2)
Ethyl isopropyl sulfide (2)
Methacrylamide (2)
(5Z,9Z,12Z)-octadeca-5,9,12-trienoic acid (2)
2-Hexenyl acetate (2)
1H-Imidazole-1-acetic acid (2)
N-Acetyl-Leu (2)
(2R,3R)-2-Aminooctadecane-1,3-diol (2)
Pyroglutamylproline (2)
Phenyl-Alanine (2)
D-Tyrosine (2)
1-Palmitoylphosphatidylcholine (2)
Rhodamine B (2)
2-Methylimidazole (2)
9-Arabinofuranosyladenine (2)
DL-Proline (2)
9,12-Octadecadiynoic acid (2)
Indoline (2)
2,4-Dimethylquinoline (2)
1-Cyclohexyl-4-(1,2-diphenylethyl)piperazine (2)
Baikiain (2)
Cis-Vitamin K1 (2)
9-beta-d-Arabinofuranosylguanine (2)
Di-N-propylamine (2)
Dieporeticanin (2)
Choline sulfate (2)
Octadeca-9,11-dienoic acid (2)
Furanone A (2)

First Public Date

2014 (40)
2025 (22)
2026 (18)
2024 (13)
2021 (13)
2023 (11)
2017 (7)
2018 (6)
2015 (5)
2020 (4)
2019 (4)
2022 (3)
2016 (2)
2013 (1)

Modelling Approach

Ordinary differential equation model (4)
Boolean model (1)

Study status

Completed (3)

Lab affiliation

Biotech Research and Innovation Centre (BRIC), Faculty of Health and Medical Sciences, University of Copenhagen (1)
Bone and Cartilage Research Unit, Arthropôle Liège, University of Liège, Liège, Belgium (1)
CENTD, Instituto Butantan (1)
Centre for Blood Research, Department of Oral Biological and Medical Sciences, University of British Columbia, Vancouver, BC, Canada (1)
Department of Biochemistry, University of Turku, Turku, Finland (1)
Department of Immunology and Regenerative Biology, Weizmann Institute of Science, Rehovot, Israel (1)
Department of Musculoskeletal and Ageing Science Institute of Life Course and Medical Sciences University of Liverpool, UK (1)
Department of Physiology & Pharmacology, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada. McCaig Institute for Bone and Joint Health, Cumming School of Medicine, University of Calgary, Calgary, Alberta T2N 4N1, Canada. (1)
Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Division of Oncology, Rambam Health Care Campus & Rappaport Faculty of Medicine, Technion, Haifa, Israel (1)
Hotchkiss Brain Institute and Department of Clinical Neurosciences, University of Calgary, Calgary, Alberta, Canada Departments of Biochemistry and Molecular Biology, and Physiology and Pharmacology, and McCaig Institute for Bone and Joint Health, University of Calgary, Calgary, Canada (1)
Hubei University of Technology (1)
Infectious Diseases and Immunity in Global Health Program, Research Institute of the McGill University Health Centre, Montreal, Quebec, Canada (1)
Institute of Molecular Health Sciences, Department of Biology, ETH Zurich (1)
Laboratory of Molecular Bases of Aging Nencki Institute of Experimental Biology (1)
Laboratory of Pediatrics, UMCG, The Netherlands (1)
Professor and Tier 1 Canada Research Chair in Proteinase Proteomics and Systems Biology at the University of British Columbia, Centre for Blood Research (1)
Professor of Chemistry University of California Riverside Riverside, CA 92521-0403 (1)
Professor, Department of Molecular Biology and Biophysics Molecular Biology and Biophysics UConn Health 263 Farmington Avenue Farmington, CT 06030-3401 (1)
Proteomics and Modomics Experimental Core Facility (PROMEC) Department of Clinical and Molecular Medicine Medisinsk teknisk forskningssenter Olav Kyrres gt. 9 N-7489 Trondheim Norway (1)
University of Texas Health Science Center at San Antonio (1)
Wellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences and Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK (1)
Wilmer Eye Institute, Smith Building, M015, 400 N. Broadway, Baltimore, MD 21287 (1)
Zoology: Biodiversity and Toxicology, Hasselt University –Campus Diepenbeek, Agoralaan 1, Gebouw D, 3590, Diepenbeek,Belgium. (1)

Keyword

Matrilysin (1)
MMP-7 (1)
Lymph nodes (1)
Adenoma (1)
Adenocarcinoma of the colon (1)
Recurrent colon cancer (1)
Stage IV colon cancer (1)
Recurrent rectal cancer (1)
Stage IV rectal cancer (1)
Liver metastases (1)
Adenocarcinoma of the rectum (1)

IsPrivate

False (6)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)
N6-dimethyl-L-lysine (1)

Study type

Transcription profiling by array (119)
RNA-seq of coding RNA (4)
Unknown experiment type (3)
Methylation profiling by array (2)
Observational (2)
Transcription profiling by SAGE (1)
ChIP-chip by tiling array (1)
Transcription profiling by RT-PCR (1)
RNA-seq of non coding RNA (1)
Interventional (1)

Release Date

2021 (271)
2022 (264)
2020 (242)
2023 (224)
2019 (204)
2018 (192)
2017 (189)
2025 (187)
2024 (150)
2015 (148)
2016 (145)
2014 (135)
2012 (111)
2013 (99)
2011 (93)
2010 (89)
2009 (70)
2008 (39)
2007 (33)
2026 (30)
2006 (16)
2005 (14)
2004 (4)
1999 (4)
2003 (3)
2001 (3)
2000 (3)
1997 (3)
2002 (2)
1998 (1)

Location

Iran (1)
Italy (1)

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Upregulation of Expression of Matrix Metalloproteinases in Alveolar Macrophages of HIV1+ Smokers with Early Emphysema

HIV1+ smokers develop emphysema at an earlier age and with a higher incidence than HIV1- smokers. Based on the knowledge that human alveolar macrophages (AM) are capable of producing proteases that degrade extracellular matrix components, we hypothesized that upregulation of AM matrix metalloprotein...

ORGANISM(S): Homo sapiens

2016-03-24 | E-GEOD-10038 | biostudies-arrayexpress

The gelatinases, matrix metalloproteinases 2 and 9, play individual roles in skeleton development

PRJNA928102 | ENA

Matrix Metalloproteinases After Surgery and/or Radiofrequency Ablation in Patients With Liver Metastases From Colorectal Cancer

RATIONALE: Studying samples of blood from patients with cancer in the laboratory may help doctors learn more about changes that occur in DNA and identify biomarkers related to cancer. It may also help doctors predict how patients will respond to treatment. PURPOSE: This research trial is studying ma...

2072126 | ecrin-mdr-crc

Dysregulation of cell migration by matrix metalloproteinases in geleophysic dysplasia

PRJNA1240284 | ENA

Sensing of mycobacterial arabinogalactan by galectin-9 exacerbates mycobacterial infection by inducing matrix metalloproteinases

PRJNA702117 | ENA

Solar simulated ultraviolet radiation induces histone 3 methylation changes in the gene promoters of matrix metalloproteinases 1 and 3 in primary human dermal fibroblasts [I]

Skin damage from solar ultraviolet radiation (UVR) accumulates in the dermal extracellular matrix (ECM) and contributes to photoaging. Following UVR exposure, matrix metalloproteinases (MMPs) are secreted by dermal fibroblasts to repair and remodel the ECM. Molecular signaling pathways delineating t...

ORGANISM(S): Homo sapiens

2014-08-27 | E-GEOD-60794 | biostudies-arrayexpress

Solar simulated ultraviolet radiation induces histone 3 methylation changes in the gene promoters of matrix metalloproteinases 1 and 3 in primary human dermal fibroblasts [II]

ORGANISM(S): Homo sapiens

2014-08-27 | E-GEOD-60795 | biostudies-arrayexpress

Transcription profiling of mouse C57Bl6 MMP-7 and MMP-10 deficient mice Pseudomonas aeruginosa exposed airway epithelium.

Airway epithelium is the initial point of host-pathogen interaction in Pseudomonas aeruginosa infection, an important pathogen in cystic fibrosis and nosocomial pneumonia. We used global gene expression analysis to determine airway epithelial transcriptional responses dependent on matrilysin (MMP-7)...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-7957 | biostudies-arrayexpress

Human apical-out nasal organoids reveal an essential role of matrix metalloproteinases in airway epithelial differentiation

PRJNA1047579 | ENA

Transcription profiling of human acne lesion vs. normal skin from acne and non acne patients

The pathogenesis of acne has been linked to multiple factors such as increased sebum production, inflammation, follicular hyperkeratinization, and the action of Propionibacterium acnes within the follicle. In an attempt to understand the specific genes involved in inflammatory acne, we performed gen...

ORGANISM(S): Homo sapiens

2008-06-14 | E-GEOD-6475 | biostudies-arrayexpress

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3314 Results

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