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UnknownMGnify: the microbiome analysis resource in 2020.
Not available
S-EPMC7145632 | biostudies-literature
MetabolomicsThe Effect of Dietary BIoactives on Gut Microbiome DivErsity (DIME) - A pilot study (Untargeted metabolomics)

The gut microbiome refers to the complex community of microorganisms (bacteria, fungi, archaea and viruses) present within our gut. The composition and complexity of gut microbiota communities are crucial for maintaining human health. Humans depend on the gut microbiota to undertake essential met...

2025-10-10 | MTBLS8100 | MetaboLights
MetabolomicsThe Effect of Dietary Bioactives on Gut Microbiome DivErsity (DIME) - A pilot study (Targeted metabolomics)

The gut microbiome refers to the complex community of microorganisms (bacteria, fungi, archaea and viruses) present within our gut. The composition and complexity of gut microbiota communities are crucial for maintaining human health. Humans depend on the gut microbiota to undertake essential met...

2025-10-10 | MTBLS7290 | MetaboLights
ProteomicsReanalysis of dataset PXD020692: “Washington state shellfish hatchery microbiome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD020692. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): marine metagenome 
2023-11-03 | PXD038539 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsReanalysis of dataset PXD003791: “MuSt multiomics - Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD003791. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): Homo sapiens (Human) 
2022-06-17 | PXD034617 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsMicrobiome-Dependent Functional Responses to Structurally Distinct Oligosaccharides Revealed by Metaproteomic
Dietary oligosaccharides are prebiotics that fuel gut microbes, but individual microbiomes may respond differently depending on oligosaccharide structure and microbiome composition and function. The extent to which specific gut microbial communities exhibit personalized functional responses to disti...
ORGANISM(S): Homo sapiens (Human) 
2026-01-13 | PXD064733 | Pride
Oligosaccharides. ex vivo Human gut microbiome Metaproteomics 
ProteomicsSheep faeces preservation affects microbiome activity
In vitro systems involving microbial fermentation such as the Hohenheim gas test (HGT) typically need freshly obtained inocula such as rumen fluid or faeces. The objective of this study was to test the possibility of becoming independent of fresh faeces by using preserved faeces. Fresh faeces from s...
ORGANISM(S): Ovis aries 
2026-03-27 | PXD060439 | Pride
Metaproteomics Microbiome Faeces 
UnknownRefining biome labeling for large-scale microbial community samples: Leveraging neural networks and transfer learning.
Not available
S-EPMC10457426 | biostudies-literature
UnknownAn Approach to Integrate Metagenomics, Metatranscriptomics and Metaproteomics Data in Public Data Resources.
Not available
S-EPMC12456259 | biostudies-literature
UnknownMetagenomic analysis of gut microbiome and resistome of diarrheal fecal samples from Kolkata, India, reveals the core and variable microbiota including signatures of microbial dark matter.
Not available
S-EPMC7339541 | biostudies-literature
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