Sort   by:  
 Page size 
GenomicsReanalysis of ChIP-Seq of PRJEB5782
In this reanalysis, 20 ERR series were reanalyzed for ChIp-Seq data.
ORGANISM(S): Homo sapiens 
2026-03-17 | GSE325130 | GEO
OtherReanalysis of ChIP-Seq of GSE117155.
In this reanalysis, 20 GSM series were reanalyzed for ChIp-Seq data.
ORGANISM(S): Homo sapiens 
2023-12-01 | GSE248645 | GEO
ProteomicsReanalysis of dataset PXD020692: “Washington state shellfish hatchery microbiome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD020692. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): marine metagenome 
2023-11-03 | PXD038539 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsReanalysis of dataset PXD005780: “Relating human gut metagenome and metaproteome”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD005780. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): human gut metagenome 
2022-05-04 | PXD032303 | Pride
Data integration Metaproteomics Reanalysis 
ProteomicsExome reanalysis and proteomic profiling identified TRIP4 as a novel cause of cerebellar hypoplasia and spinal muscular atrophy (PCH1)
TRIP4 is one of the subunits of the transcriptional coregulator ASC-1, a ribonucleoprotein complex that participates in transcriptional coactivation and RNA processing events. Recessive variants in the TRIP4 gene have been associated with spinal muscular atrophy with bone fractures as well as a sev...
ORGANISM(S): Homo sapiens (Human) 
2022-02-16 | PXD023584 | Pride
Proteogenomics Pch1 Solve-rd Exome reanalysis Trip4 
OtherReanalysis of TSA-Seq mapping to determine genomic coordinates for speckles-associated domains.
In this reanalysis, 9 GSM series were reanalyzed to obtain the genomic coordinates of speckles-associated domains.
ORGANISM(S): Homo sapiens 
2023-12-01 | GSE248644 | GEO
TranscriptomicsReanalysis of transcriptomic profiling of isolated CTC from 31 patients
The CTC-iChip microfluidic device [PMID: 23552373 ] enables isolation of rare viable circulating tumor cells (CTCs) directly from whole blood specimens of patients with cancer. Reanalysis of freshly isolated CTC from 31 women with hormone receptor positive metastatic breast cancer.
ORGANISM(S): Homo sapiens 
2023-06-20 | GSE215886 | GEO
ProteomicsReanalysis of dataset PXD003791: “MuSt multiomics - Integrated multi-omics of the human gut microbiome in a case study of familial type 1 diabetes”
This project contains raw data, intermediate files and results is a re-analysis of the publicly available dataset from the PRIDE dataset PXD003791. The RAW files were processed using ThermoRawFileParser, SearchGUI and PeptideShaker through standard settings (see ‘Data Processing Protocol’). This rea...
ORGANISM(S): Homo sapiens (Human) 
2022-06-17 | PXD034617 | Pride
Data integration Metaproteomics Reanalysis 
UnknownA reanalysis dataset of the South China Sea.
Not available
S-EPMC4423333 | biostudies-literature
UnknownUnique bioinformatic approach and comprehensive reanalysis improve diagnostic yield of clinical exomes.
Not available
S-EPMC6777619 | biostudies-literature
Sort   by:  
 Page size