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ProteomicsSWATH-based quantitative proteomics data derived from whole grain of Malaysian local pigmented and non-pigmented rice varieties
Information about protein expression in rice grain across both pigmented and non-pigmented rice varieties is still relatively scarce. The data provided here represent proteomic data obtained from selected 6 Malaysian local rice varieties with varying pigmentations (black, red and white). The selecte...
ORGANISM(S): Oryza sativa (Rice) 
2020-04-27 | PXD018338 | Pride
Oryza sativa indica  pigmented rice  non-pigmented rice  nutritional traits  swath-ms. 
ProteomicsProteomic Genotyping: Using Mass Spectrometry to Infer SNP Genotypes in Pigmented and Non-Pigmented Hair
Proteomic genotyping is the use of genetically variant peptides (GVPs), detected in a forensic protein sample, to infer the genotype of corresponding non-synonymous SNP alleles in the donor’s genome. This process does not depend on the presence of accessible or useable DNA in a sample. This makes pr...
ORGANISM(S): Homo sapiens (Human) 
2020-05-27 | PXD016156 | Pride
Proteomic genotyping Hair Hair pigmentation Melanosomes Genetically variant peptides 
TranscriptomicsTranscriptome and methylome interactions in rice hybrids
This research reports genome-wide measurements of genetic and epigenetic patterns of inheritance through an integrative analysis of BS-seq, RNA-seq, and siRNA-seq data in two inbred parents of the Nipponbare (NPB) and Indica (93-11) variety of rice and their hybrid offspring. We generated integrativ...
ORGANISM(S): Oryza sativa Indica Group 
2012-07-10 | E-GEOD-38480 | biostudies-arrayexpress
GenomicsTranscriptome analysis of pigmented and non-pigmented rice grain - focusing on antioxidant and micronutrient perspectives.
Transcriptome sequencing of pigmented and non-pigmented rice grain using Illumina HiSeq 4000 platform.
PRJEB34340 | ENA
UnknownData on genome resequencing of pigmented and non-pigmented Malaysian rice varieties.
Not available
S-EPMC7298397 | biostudies-literature
UnknownRNA-seq data from whole rice grains of pigmented and non-pigmented Malaysian rice varieties.
Not available
S-EPMC7138961 | biostudies-literature
TranscriptomicsProfiling of small RNA populations in tricellular pollen of rice
To investigate the potential function of miRNAs during male gametogenesis in rice, 13-40 nt RNA were extrected from tricellular pollen (TCP) for high-throughput sequencing. We identified 104 unique miRNAs from TCP library, 57 of which are novel derived from 39 pre-miRNAs. This subseries contain one ...
ORGANISM(S): Oryza sativa Indica Group 
2012-03-15 | E-GEOD-29178 | biostudies-arrayexpress
UnknownChanges of polyphenols and their antioxidant activities in non-pigmented, red and black rice during in vitro digestion.
Not available
S-EPMC11415810 | biostudies-literature
UnknownComprehensive proteomics data on whole rice grain of selected pigmented and non-pigmented rice varieties using SWATH-MS approach.
Not available
S-EPMC7334386 | biostudies-literature
UnknownMetabolite Profiling Reveals Distinct Modulation of Complex Metabolic Networks in Non-Pigmented, Black, and Red Rice (Oryza sativa L.) Cultivars.
Not available
S-EPMC8230048 | biostudies-literature
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