pak - OmicsDI

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Proteomics (2153)
Unknown (2121)
Transcriptomics (851)
Genomics (220)
Metabolomics (20)
Multiomics (3)

Organisms

Homo sapiens (499)
Mus musculus (309)
Arabidopsis thaliana (85)
Rattus norvegicus (34)
Xenopus laevis (13)
Fusarium sinicum (12)
Pseudomonas aeruginosa (8)
Bos taurus (6)
Sus scrofa (6)
Caenorhabditis elegans (4)
Danio rerio (3)
Macaca mulatta (2)
Oryza sativa (2)
Equus caballus (2)
Cavia porcellus (1)
human oral metagenome (1)
Brassica rapa subsp. chinensis (1)
Salix purpurea (1)
Sorghum bicolor (1)
Zea mays (1)
Salmo salar (1)
Oryctolagus cuniculus (1)
Triticum aestivum (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Drosophila melanogaster (1)
Pseudomonas phage PAK_P3 (1)
Pseudomonas phage PAK_P4 (1)
Pseudomonas aeruginosa PAK (1)
Ovis aries (1)

Organisms

Homo sapiens (14)
Brassica rapa subsp. chinensis (11)
Brassica rapa (10)
Pseudomonas aeruginosa PAK (9)
Mus musculus (7)
Pseudomonas aeruginosa (3)
Fusarium annulatum (1)
Pseudomonas phage BL7 (1)
Pseudomonas phage BL6 (1)
Pseudomonas phage BL4 (1)
Clostridium tyrobutyricum (1)
Brassica rapa subsp. oleifera (1)
Caenorhabditis elegans (1)
freshwater metagenome (1)
Bacillus anthracis (1)
Saccharomyces cerevisiae (1)

Repository

pride (2088)
biostudies-arrayexpress (937)
ENA (102)
MassIVE (39)
geo (22)
MetaboLights (18)
EGA (16)
PAXDB (12)
jPOST (7)
EVA (2)
PanoramaPublic (2)
GNPS (1)
iProX (1)
MetabolomicsWorkbench (1)
PeptideAtlas (1)

Tissue

Cell culture (520)
Epithelial cell (148)
Brain (108)
Permanent cell line cell (93)
Liver (69)
Lung (68)
Fibroblast (58)
T cell (55)
Leaf (53)
B cell (47)
Heart (45)
Blood (45)
Plant cell (44)
Kidney (40)
Cell suspension culture (36)
Colon (35)
Whole body (33)
Blood cell (31)
Embryonic stem cell (29)
Macrophage (27)
Stem cell (26)
Spleen (26)
Blood plasma (25)
Bone marrow (23)
Skin (22)
HeLa cell (22)
Hepatocyte (20)
Root (19)
Primary cell (18)
Keratinocytes (1)

Disease

Breast cancer (63)
Disease free (47)
Colon cancer (37)
Acute leukemia (33)
Cervix carcinoma (21)
Alzheimer's disease (19)
Lung cancer (18)
Melanoma (16)
Non-small cell lung carcinoma (13)
Lymphoma (13)
Pancreatic ductal adenocarcinoma (13)
Pancreatic cancer (13)
Parkinson's disease (12)
Type 2 diabetes mellitus (12)
Multiple myeloma (11)
Huntington Disease (11)
Lung adenocarcinoma (10)
Malignant neoplasm of ovary (10)
Obesity (9)
Cardiovascular system disease (7)
Influenza (7)
Hepatocellular carcinoma (6)
Normal (5)
Cataract (2)
HIV encephalitis (1)
Acute myeloid leukaemia (1)
Pneumococcal meningitis (1)
T-cell acute lymphoblastic leukemia (1)
C. burnetii infected (1)
None (1)

Technology Type

Mass Spectrometry (2089)
Shotgun proteomics (1322)
Bottom-up proteomics (404)
Data-dependent acquisition (261)
Affinity purification coupled with mass spectrometry proteomics (179)
Data-independent acquisition (97)
Top-down proteomics (76)
Chemical cross-linking coupled with mass spectrometry proteomics (73)
SWATH MS (45)
SRM/MRM (30)
Gel-based experiment (29)
Mass spectrometry (13)
All-ion fragmentation (12)
DiaPASEF (12)
Immunopeptidomics (11)
HDMSE (6)
Mass spectrometry assay (4)
Affinity proteomics (4)
Mass spectrometry imaging (3)
Glycoproteomics (2)
NMR spectroscopy (1)
ESI (1)
Metaproteomics (1)
Proteogenomics (1)
MSE (1)

Instrument Platform

Illumina HiSeq 2500 (24)
NextSeq 500 (23)
Illumina HiSeq 4000 (21)
Illumina NovaSeq 6000 (18)
Illumina HiSeq 2000 (12)
Illumina Genome Analyzer II (7)
Illumina Genome Analyzer IIx (2)
NextSeq 550 (2)
Agilent (1)
TruSeq Stranded mRNA assay (Illumina) (1)
PureLink RNA Mini Kit (Thermo Fisher) (1)
Standard cell culture (1)
Chromium™ Next GEM Single Cell 3′ Kit v3.1 (10X Genomics, PN-1000269) (1)
Computer (1)
Dell T8310 (1)
Microcentrifuge (1)
OpenArray NT cycler (1)
PCR Applied Biosystems (1)
Qubit (1)
GeneChip Scanner 3000 7G (1)
Agilent G2565AA and G2565BA Microarray Scanner (1)
GenePix 4000A [Axon Instruments] (1)
G2565AA DNA microarray scanner [Agilent] (1)
Other (1)
Illumina NovaSeq X (1)
NA (1)
Ion Torrent Proton (1)
N/A (1)
Illumina TruSeq® Stranded mRNA Library Preparation Kit (Illumina) (1)
DNBSEQ-G400 (1)

Publication Date

2025 (322)
2021 (250)
2022 (245)
2024 (241)
2023 (241)
2026 (235)
2020 (204)
2019 (175)
2018 (153)
2015 (149)
2013 (149)
2016 (138)
2014 (129)
2017 (98)
2012 (92)
2011 (87)
2010 (82)
2008 (56)
2009 (42)
2007 (25)
2006 (5)
2004 (5)
2005 (3)

UNIPROT ID/AC

F193B_HUMAN (12)
ESCO2_HUMAN (12)
F117A_HUMAN (12)
ABCA7_HUMAN (12)
PRDM6_HUMAN (12)
AT7L2_HUMAN (12)
A0A1P0AZG4_HUMAN (12)
DACT1_HUMAN (12)
PK1L1_HUMAN (12)
RP1L1_HUMAN (12)
ZN541_HUMAN (12)
RADX_HUMAN (12)
CH074_HUMAN (12)
PDZD7_HUMAN (12)
LONF1_HUMAN (12)
KLOTB_HUMAN (12)
F186B_HUMAN (12)
KCNC3_HUMAN (12)
PSMA8_HUMAN (12)
PAL4E_HUMAN (12)
9606.ENSP00000366679 (12)
H7BZ11_HUMAN (12)
PAL4A_HUMAN (12)
9606.ENSP00000352119 (12)
U3KQV3_HUMAN (12)
PABP3_HUMAN (12)
M0QYT0_HUMAN (12)
9606.ENSP00000462355 (12)
9606.ENSP00000348924 (12)
9606.ENSP00000481486 (12)

CHEBI ID

CHEBI:30769 (4)
CHEBI:17596 (4)
CHEBI:6650 (4)
CHEBI:25017 (4)
CHEBI:17992 (3)
CHEBI:29864 (3)
CHEBI:16988 (3)
CHEBI:16828 (3)
CHEBI:30772 (3)
CHEBI:18019 (3)
CHEBI:14314 (3)
CHEBI:17775 (3)
CHEBI:7916 (3)
CHEBI:17509 (3)
CHEBI:15354 (3)
CHEBI:16040 (3)
CHEBI:16856 (3)
CHEBI:27897 (3)
CHEBI:17754 (3)
CHEBI:15741 (3)
CHEBI:16708 (3)
CHEBI:28044 (3)
CHEBI:1958 (2)
CHEBI:25255 (2)
CHEBI:2430 (2)
CHEBI:2429 (2)
CHEBI:15642 (2)
CHEBI:5587 (2)
CHEBI:7386 (2)
CHEBI:1113 (2)

Metabolite Name

Leucine (6)
Malic acid (6)
Phenylalanine (6)
Citric acid (5)
Uracil (5)
Cytosine (5)
Hypoxanthine (5)
Adenine (5)
Creatine (5)
Pyroglutamic acid (5)
Xanthine (5)
Inosine (5)
Carnosine (4)
Benzoic acid (4)
Succinic acid (4)
Xanthosine (4)
Tryptophan (4)
Tyrosine (4)
Alanine (4)
Maltose (4)
Linoleic acid (4)
Glutaric acid (4)
Adenosine (4)
AMP (4)
Ornithine (4)
Taurine (4)
Choline (4)
Cytidine (4)
Guanosine (4)
Harman (3)

First Public Date

2024 (17)
2026 (15)
2021 (14)
2025 (11)
2017 (11)
2023 (6)
2018 (6)
2022 (5)
2016 (5)
2019 (4)
2014 (3)
2015 (2)
2013 (2)
2020 (1)

Classification

bacteria (14)
viruses (3)
fungi (1)

Modification

2x(15)N labeled L-lysine (7)
4x(15)N labeled L-arginine (6)
N6 (5)
N6-dimethyl-L-lysine (4)
4-tetrahydrothiazine-3-carboxylic acid (4)
+3amu) (2)
79.966331 (1)
4x(2)H labeled dimethylated residue (1)
15.994915 (1)
6x(2)H labeled dimethylated L-arginine (1)
57.02146 (1)
15.99491 (1)
4x(2)H labeled dimethylated L-lysine (1)
57.021464 (1)
Not available (1)

Study type

Transcription profiling by array (621)
RNA-seq of coding RNA (99)
ChIP-seq (90)
Other (13)
Methylation profiling by array (12)
Comparative genomic hybridization by array (10)
Cell line - High-throughput sequencing (9)
RNA-seq of coding RNA from single cells (8)
RNA-seq of non coding RNA (8)
Unknown experiment type (7)
Methylation profiling by high throughput sequencing (7)
Transcription profiling by RT-PCR (6)
MicroRNA profiling by array (5)
ChIP-chip by tiling array (4)
ATAC-seq (4)
RNA-seq of total RNA (4)
RNAi profiling by array (3)
ChIP-chip by array (3)
Human - High-throughput sequencing (2)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (2)
Genotyping by array (2)
4C (2)
ChIP-chip by SNP array (1)
Transcription profiling by SAGE (1)
RNA-seq of non coding RNA from single cells (1)
Differential (1)
Cell line - One-color microarray (1)
Human - One-color microarray (1)
Proteomic profiling by mass spectrometer (1)

Release Date

2022 (256)
2023 (252)
2021 (232)
2025 (218)
2024 (214)
2015 (195)
2020 (173)
2013 (171)
2019 (149)
2014 (147)
2018 (146)
2016 (143)
2012 (126)
2011 (118)
2017 (112)
2010 (111)
2009 (71)
2008 (69)
2026 (38)
2007 (36)
2006 (19)
2004 (12)
2005 (11)
2002 (8)
2000 (7)
1998 (7)
2003 (6)
2001 (5)
1999 (5)
1996 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (68)
Department of Microbiology and Immunology, The University of Melbourne, Victoria, Australia (11)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (11)
Institute of Molecular Biology (IMB), Mainz, Germany (11)
Head of the Curie Institute Mass Spectrometry Platform (10)
ETH Zurich (9)
Department of Biochemistry and Molecular Biology, University of Calgary, Alberta, Canada; Department of Physiology and Pharmacology, University of Calgary, Alberta, Canada; The Hotchkiss Brain Institute, University of Calgary, Alberta, Canada; McCaig Institute for Bone and Joint Health, University of Calgary, Alberta, Canada (8)
Harvard Medical School (8)
Department of Cell Biology, Harvard Medical School, Boston MA 02115 USA (7)
OncoProteomics Laboratory, Dept of Medical Oncology, VU University Medical Center, Amsterdam, The Netherlands (7)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (7)
CRUK Scotland Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (6)
The Wilmer Eye Institute, Johns Hopkins University School of Medicine, Baltimore, Maryland 21287 USA (6)
Department of Cell Biology, Harvard Medical School (6)
Proteomics Center, Erasmus MC (6)
Department of Cell Biology, Harvard Medical School, Boston, MA 02115 USA (5)
CNIO (5)
McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205 USA (5)
CRUK - Beatson Institute for Cancer Research - Switchback Rd, Bearsden, Glasgow G61 1BD - United Kingdom (5)
Department of Convergence Medicine, Convergence Medicine Research Center/Biomedical Research Center, Asan Medical Center, Asan Institute for Life Sciences, University of Ulsan College of Medicine, 88 Olympic-ro 43-gil, Songpa-gu, Seoul 05505, Republic of Korea. (5)
Moffitt Cancer Center Tampa, FL, USA (5)
Tsinghua University (5)
EDyP (5)
Department of Cell Biology, Harvard Medical School, Boston, MA, USA (5)
Department of Microbiology and Immunology, University of Melbourne at the Peter Doherty Institute for Infection and Immunity, Melbourne 3000, Australia (5)
Department of Biology, Institute of Microbiology, ETH Zürich, Switzerland (5)
Lineberger Comprehensive Cancer Center at UNC Chapel Hill (4)
Shanghai Key Laboratory of Bioactive Small Molecules, Department of Physiology and Pathophysiology, School of Basic Medical Sciences, Fudan University Shanghai Medical College, Shanghai 200032, China. (4)
Evotec, Martinsried, Germany (4)
Moffitt Cancer Center (4)

5370 Results

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