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TranscriptomicsExpression analysis of Xylella fastidiosa PD Temecula strain grown in different media
Investigation of whole genome gene expression level changes in Xylella fastidiosa grown in minimal media XFM and XFM supplied with pectin or glucan (Host polysaccharides) , compared to cell grown in the complex media PWG. The cells grown in the minimal medium XFM supplied with host polysaccharides s...
ORGANISM(S): Xylella fastidiosa Temecula1 
2009-10-03 | E-GEOD-18369 | biostudies-arrayexpress
TranscriptomicsFish oil/pectin temporally alters gene expression profiles in exfoliated rat colonocytes throughout oncogenesis
We have demonstrated that fish oil/pectin (FO/P) diets protect against colon cancer compared to corn oil/cellulose (CO/C) by upregulating apoptosis and suppressing proliferation. To elucidate the mechanisms whereby FO/P diets induce apoptosis and suppress proliferation during the tumorigenic process...
ORGANISM(S): Rattus norvegicus 
2012-02-20 | E-GEOD-27266 | biostudies-arrayexpress
TranscriptomicsRNA-seq analysis of Bacteroides xylanisolvens XB1AT grown on pectin or xylan
Dietary fiber degradation is a key function of the human gut microbiota. The aim of this study was to increase our knowledge on the degradation of plant cell wall polysaccharide degradation by a prominent human gut bacterial species, Bacteroides xylanisolvens. The transcriptome analysis of B. xylan...
ORGANISM(S): Bacteroides xylanisolvens 
2015-10-28 | E-GEOD-74379 | biostudies-arrayexpress
TranscriptomicsHuman leukocytes from 6 volunteers before and 2h after pectin capsules consumption (I)
Methanol (MeOH) is considered to be a poison in humans because of the alcohol dehydrogenase (ADH)-mediated conversion of MeOH into toxic formaldehyde (FA). Our recent genome-wide analysis of the mouse brain demonstrated that an increase in endogenous MeOH after ADH inhibition led to a significant in...
ORGANISM(S): Homo sapiens 
2014-06-10 | E-GEOD-58348 | biostudies-arrayexpress
TranscriptomicsHuman leukocytes from 6 volunteers before and 2h after pectin capsules consumption (II)
Methanol (MeOH) is considered to be a poison in humans because of the alcohol dehydrogenase (ADH)-mediated conversion of MeOH into toxic formaldehyde (FA). Our recent genome-wide analysis of the mouse brain demonstrated that an increase in endogenous MeOH after ADH inhibition led to a significant in...
ORGANISM(S): Homo sapiens 
2014-06-10 | E-GEOD-58349 | biostudies-arrayexpress
TranscriptomicsHuman leukocytes from 6 volunteers before and 2h after pectin capsules consumption (IV)
Methanol (MeOH) is considered to be a poison in humans because of the alcohol dehydrogenase (ADH)-mediated conversion of MeOH into toxic formaldehyde (FA). Our recent genome-wide analysis of the mouse brain demonstrated that an increase in endogenous MeOH after ADH inhibition led to a significant in...
ORGANISM(S): Homo sapiens 
2014-06-10 | E-GEOD-58364 | biostudies-arrayexpress
no omics definedTranscription profiling of Aspergillus niger grown in media containg different pectic substrates to study the pectinolytic system
To study the induction of the genes encoding known and putative enzymes from the pectinolytic system of A. niger, the transcriptional profiles of 58 selected known or putative pectinolytic genes were monitored by microarray experiments. For this purpose, A. niger was cultivated on the complex substr...
ORGANISM(S): Aspergillus niger 
2008-06-13 | E-MEXP-1626 | biostudies-arrayexpress
GenomicsUnlocking soybean meal pectin recalcitrance using a multi enzyme cocktail approach
Fungal pectin-degrading enzymes for soybean meal degradation
PRJEB83122 | ENA
ProteomicsCandidate Arabidopsis MYB5-interacting proteins in developing siliques identified by IP-MS
2 g developing siliques were harvested from the pMYB5:MYB5-GFP/myb5-2 complementary plants treated with 100 μM GA3 or 50 μM PAC. The 35S:GFP transgenic plants served as a negative control. Siliques were immediately crosslinked with 1% paraformaldehyde for 30 min on ice in a vacuum chamber. Total pro...
ORGANISM(S): Arabidopsis Thaliana 
2025-03-27 | PXD062288 |
ProteomicsTemporal proteome analysis of Clostridium cellulovorans
In order to elucidate the temporal proteome dynamics of C. cellulovorans, we performed quantitative proteome analysis in a different growth phase with five carbon sources (glucose, cellulose, xylan, galactomannan, and pectin).
ORGANISM(S): Clostridium Cellulovorans 743b 
2019-04-22 | PXD010977 | JPOST Repository
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