post translation modifications

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Proteomics (468)
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Dehalococcoides mccartyi 195 (1)
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Synechocystis sp. PCC 6803 (1)
Escherichia coli str. K-12 substr. MG1655 (1)
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human gut metagenome (1)
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Technology Type

Mass Spectrometry (360)
Shotgun proteomics (160)
Bottom-up proteomics (72)
Top-down proteomics (70)
Data-dependent acquisition (45)
Affinity purification coupled with mass spectrometry proteomics (43)
Data-independent acquisition (19)
Gel-based experiment (16)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Mass spectrometry (3)
RNA mass spectrometry (3)
SRM/MRM (3)
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HDMSE (2)
SWATH MS (2)
Mass spectrometry assay (1)
DiaPASEF (1)
Glycoproteomics (1)

Instrument Platform

Q Exactive (27)
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Illumina HiSeq 2500 (4)
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Ion Torrent Proton (1)
BGISEQ-500 (1)
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6460 Triple Quadrupole LC/MS (Agilent) (1)
7890A GC coupled to a 5975C inert XL MSD, with a 7683 series injector (G2614A) (1)

Publication Date

2022 (124)
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2026 (59)
2023 (57)
2021 (44)
2020 (37)
2018 (31)
2016 (29)
2017 (27)
2013 (23)
2015 (22)
2019 (20)
2014 (13)
2011 (13)
2012 (12)
2010 (9)
2009 (4)
2008 (4)
2006 (3)
2007 (2)
2005 (1)

UNIPROT ID/AC

A3FA66_VITVI (2)
A3FA68_VITVI (2)
A5ACP0_VITVI (2)
A5ACR7_VITVI (2)
A5AD40_VITVI (2)
A5ADC4_VITVI (2)
A5ADJ5_VITVI (2)
A5ADV7_VITVI (2)
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A5AH72_VITVI (2)
A5AHJ5_VITVI (2)
A5AHP0_VITVI (2)
A5AHT6_VITVI (2)
A5AHY0_VITVI (2)
A5AI12_VITVI (2)
A5AIE0_VITVI (2)
A5AJ83_VITVI (2)

CHEBI ID

CHEBI:16704 (2)
CHEBI:16040 (2)
CHEBI:16750 (2)
CHEBI:16335 (2)
CHEBI:20597 (1)
CHEBI:20598 (1)
CHEBI:75654 (1)
CHEBI:62005 (1)
CHEBI:229469 (1)
CHEBI:234279 (1)
CHEBI:60193 (1)
CHEBI:191041 (1)
CHEBI:132542 (1)
CHEBI:156118 (1)
CHEBI:183249 (1)
CHEBI:183804 (1)
CHEBI:137590 (1)
CHEBI:19226 (1)
CHEBI:72426 (1)
CHEBI:134587 (1)
CHEBI:74470 (1)
CHEBI:140951 (1)
CHEBI:140946 (1)
CHEBI:140940 (1)
CHEBI:134487 (1)
CHEBI:134242 (1)
CHEBI:65294 (1)
CHEBI:65302 (1)
CHEBI:65293 (1)
CHEBI:82750 (1)

Metabolite Name

Guanosine (2)
Cytosine (2)
5-carboxymethyluridine (1)
8-oxoguanosine (1)
5-methyl-2'-O-methyluridine (1)
Dihydrouridine (1)
5-carbamoylmethyluridine (1)
N6,2'-O-dimethyladenosine (1)
5-methoxycarbonylmethyluridine (1)
5-methoxycarbonylmethyl-2-thiouridine (1)
5-hydroxymethylcytidine (1)
5-formylcytidine (1)
Queuosine (1)
PI (40:6) (1)
PI (38:6).(16:0/22:6) (1)
PI (38:5)c (1)
PG (36:1)b.(18:0/18:1) (1)
PG (36:1)a.(18:0/18:1) (1)
PC (40:8)a.(18:2/22:6) (1)
PC (40:7)b.(18:1/22:6) (1)
PC (40:7)a.(18:1/22:6) (1)
PC (40:6).(18:0/22:6) (1)
PC (40:5)a.(18:0/22:5) (1)
PC (38:6)c.(18:2/20:4) (1)
PC (38:6)a.(16:0/22:6) (1)
PC (38:4).(18:0/20:4) (1)
PC (38:3).(18:0/20:3) (1)
PC (38:2)a.(18:0/20:2) (1)
PC (38:1).(18:0/20:1) (1)
PC (37:1).(18:0/19:1) (1)

First Public Date

2026 (20)
2025 (20)
2023 (13)
2022 (10)
2021 (10)
2024 (6)
2018 (6)
2014 (6)
2020 (4)
2019 (4)
2013 (4)
2017 (3)
2016 (2)

Classification

protozoa (3)
viruses (2)
bacteria (2)

Modification

15.994915 (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
45.029395 (1)
56.026215 (1)
58.005479 (1)
N6 (1)

Study type

Transcription profiling by array (48)
RNA-seq of coding RNA (23)
ChIP-seq (8)
RNA-seq of non coding RNA (7)
ChIP-chip by tiling array (4)
Other (4)
Unknown experiment type (3)
RNA-seq of coding RNA from single cells (3)
Methylation profiling by high throughput sequencing (2)
Transcription profiling by SAGE (1)
Human - Single-cell sequencing (1)
Translation profiling (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
CLIP-seq (1)
ATAC-seq (1)
RIP-seq (1)
DNA-seq (1)
Methylation profiling by array (1)
CUT&RUN (1)

Release Date

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2021 (47)
2022 (46)
2023 (45)
2020 (38)
2015 (38)
2019 (35)
2024 (34)
2017 (31)
2013 (29)
2018 (26)
2014 (25)
2016 (20)
2012 (17)
2011 (15)
2010 (14)
2009 (10)
2026 (6)
2008 (6)
2007 (4)
2006 (3)
2005 (2)
2000 (1)

Lab affiliation

Departments of Chemical and Biological Engineering, Chemistry, and Molecular Biosciences, the Chemistry of Life Processes Institute, and the Proteomics Center of Excellence, Northwestern University, Evanston, Illinois 60208, United States (60)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (7)
Associate Professor of Genetics Stanford University USA (5)
Center for Reproductive Evolution, Biology Department, Syracuse University (5)
Whitehead Institute and MIT (4)
Department of Cellular & Molecular Physiology, Yale School of Medicine, New Haven, CT 06520, USA. Systems Biology Institute, Yale University, New Haven, CT 06516, USA (3)
Institut Pasteur Unité "Plasticité du Génome Bactérien" Département Génomes et Génétique 28 rue du Docteur Roux 75724 Paris Cedex 15 (3)
Institute for Research in Biomedicine (IRB Barcelona), The Barcelona Institute of Science and Technology, 08028 Barcelona, Spain Institució Catalana de Recerca i Estudis Avançats (ICREA), 08010 Barcelona, Spain (3)
Department of Biological Sciences, Seoul National University, Seoul, Republic of Korea (2)
Department of Biomedical Sciences, University of Padova, Italy (2)
Division of Virology, Department of Pathology, University of Cambridge, UK (2)
EDyP (2)
Institute for Research in Immunology and Cancer, Department of Biochemistry, Department of Chemistry, Université de Montréal, Québec, Canada H3T 1J4 (2)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences (2)
MOBILion Systems, Inc. (2)
Proteomics Core Facility and Research Group Proteomics, CEITEC-MU, Masaryk University, Brno, Czech Republic (2)
Research Institute of Molecular Pathology (IMP), Vienna BioCenter, Vienna, Austria (2)
Research Institute of Molecular Pathology, Vienna BioCenter, Vienna, Austria (2)
UPR 9002 CNRS-ARN Université De Strasbourg IBMC (2)
University of Cologne, Germany (2)
1 Institute of Marine Sciences, Spanish National Research Council (CSIC), 08003 Barcelona, Spain 2 Institute of Biotechnology and Biomedicine (IBB), Universitat Autònoma de Barcelona, 08193 Bellaterra (Cerdanyola del Vallès), Spain (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1 URBC, Namur Research Institute for Life Sciences (Narilis), University of Namur (UNamur), 5000, Namur, Belgium (1)
1. Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research, Clayton, Victoria, Australia. 2. Department of Molecular and Translational Science, Monash University, Clayton, Victoria, Australia. (1)
2 Yuanmingyuan West Road, Haidian District, Beijing, P.R. China 100193Yuanmingyuan West Road, Haidian District, Beijing, P.R. China 100193 (1)
2Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), 1030 Vienna, Austria. (1)
Additional Professor and Head Department of Biotechnology, Ail India institute of Medical Sciences New Delhi -110029 (1)
Affiliation of Qiutao Xu: State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, College of Agriculture, Guangxi University, Nanning 530004, China (1)
Ashoka University, Rajiv Gandhi Education City Sonipat, Haryana, India – 131029 (1)
Associate Professor of Proteomics Departments of Chemistry and Biochemistry | University of Oxford (1)

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Optimization of codon translation rates via tRNA modifications maintains proteome integrity

Proteins begin to fold as they emerge from translating ribosomes. The kinetics of ribosome transit along a given mRNA can influence nascent chain folding, but the extent to which individual codon translation rates impact proteome integrity remains unknown. Here, we show that slower decoding of discr...

ORGANISM(S): Caenorhabditis elegans

2015-06-04 | E-GEOD-67387 | biostudies-arrayexpress

The post-translational modifications and translation-regulatory role of METTL14 in 5-fluorouracil-resistant colorectal cancer [Ribo-seq]

PRJNA907315 | ENA

The post-translational modifications and translation-regulatory role of METTL14 in 5-fluorouracil-resistant colorectal cancer [mRNA-seq]

PRJNA907308 | ENA

The post-translational modifications and translation-regulatory role of METTL14 in 5-fluorouracil-resistant colorectal cancer

PRJNA907307 | ENA

Post-transcriptional gene regulation by mRNA modifications.

Not available

S-EPMC5167638 | biostudies-literature

Trm9-Catalyzed tRNA Modifications Regulate Global Protein Expression by Codon-Biased Translation.