systems virology

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Unknown (3024)
Transcriptomics (115)
Genomics (53)
Proteomics (45)
Metabolomics (11)
Models (7)

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Homo sapiens (51)
Mus musculus (20)
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Human enterovirus 71 (strain 7423/MS/87) (1)

Organisms

Homo sapiens (21)
Severe acute respiratory syndrome coronavirus 2 (8)
Mus musculus (3)
Mesocricetus auratus (2)
Bat coronavirus (1)
Human immunodeficiency virus 1 (1)
Staphylococcus aureus (1)

Repository

biostudies-arrayexpress (115)
ENA (50)
pride (43)
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geo (2)
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Tissue

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Disease

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Technology Type

Mass Spectrometry (43)
Shotgun proteomics (18)
Bottom-up proteomics (11)
Affinity purification coupled with mass spectrometry proteomics (8)
Data-dependent acquisition (8)
Top-down proteomics (7)
Mass spectrometry (6)
Mass spectrometry assay (5)
SWATH MS (2)
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Gel-based experiment (1)

Instrument Platform

NextSeq 500 (5)
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HIVE computer cluster (1)
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Sequel (1)
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418 [Affymetrix] (1)
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6490 Triple Quadrupole LC/MS (Agilent) (1)
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Liquid Chromatography MS - positive (1)
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Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - HILIC (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (30)
2011 (16)
2025 (15)
2024 (14)
2014 (13)
2012 (13)
2026 (12)
2019 (12)
2010 (10)
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2018 (8)
2016 (6)
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2020 (4)
2008 (4)
2009 (3)
2021 (2)
2007 (2)
2017 (1)
2015 (1)
2005 (1)
2004 (1)

CHEBI ID

CHEBI:16704 (2)
CHEBI:16040 (2)
CHEBI:16750 (2)
CHEBI:16335 (2)
CHEBI:17596 (2)
CHEBI:140927 (1)
CHEBI:63990 (1)
CHEBI:53026 (1)
CHEBI:131992 (1)
CHEBI:140975 (1)
CHEBI:140978 (1)
CHEBI:140977 (1)
CHEBI:140976 (1)
CHEBI:140974 (1)
CHEBI:140973 (1)
CHEBI:140967 (1)
CHEBI:140966 (1)
CHEBI:140965 (1)
CHEBI:140964 (1)
CHEBI:140962 (1)
CHEBI:140961 (1)
CHEBI:140957 (1)
CHEBI:140956 (1)
CHEBI:140955 (1)
CHEBI:140954 (1)
CHEBI:140950 (1)
CHEBI:140960 (1)
CHEBI:28742 (1)
CHEBI:29083 (1)
CHEBI:22860 (1)

Metabolite Name

TAG 59:12 (15:0/22:6/22:6) (2)
TAG 55:7 (15:0/18:1/22:6) (2)
TAG 55:6 (15:0/18:0/22:6) (2)
TAG 55:1 (15:0/18:1/22:0) (2)
TAG 51:5 (15:0/18:1/18:4) (2)
TAG 51:4 (15:0/18:1/18:3) (2)
TAG 51:3 (15:0/18:1/18:2) (2)
TAG 51:2 (15:0/18:1/18:1) (2)
TAG 49:1 (15:0/16:0/18:1) (2)
TAG 48:1 (14:0/16:0/18:1) (2)
TAG 48:1 (15:0/15:0/18:1) (2)
TAG 47:1 (14:0/15:0/18:1) (2)
Pyroglutamic acid (2)
Pantothenic acid (2)
Malic acid (2)
Maltose (2)
5-carboxymethyluridine (1)
8-oxoguanosine (1)
5-methyl-2'-O-methyluridine (1)
Dihydrouridine (1)
13-Methyltetradecanoic Acid (1)
SM(d18:1/24:2) (1)
SM(d18:1/18:2) (1)
PE(O-38:7) (1)
N-METHYL-GLUTAMATE (1)
METHYLTHIOADENOSINE (1)
Homothreonine (1)
5,6-DIHYDROURACIL (1)
5-carbamoylmethyluridine (1)
TAG 53:6 (C15:0/C16:0/C22:6) (1)

IsPrivate

False (7)

Submitter Keywords

Not Peer Reviewed (7)

First Public Date

2014 (11)
2022 (8)
2020 (6)
2024 (5)
2023 (5)
2017 (4)
2026 (3)
2025 (3)
2021 (2)
2019 (1)
2018 (1)
2016 (1)

Classification

viruses (10)
bacteria (1)

Modelling Approach

Constraint-based model (7)

Study type

Transcription profiling by array (86)
RNA-seq of coding RNA (10)
Ribo-seq (4)
RNA-seq of non coding RNA (4)
Plant - High-throughput sequencing (2)
Comparative genomic hybridization by array (2)
Other (2)
High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
ChIP-seq (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)

Release Date

2022 (358)
2021 (353)
2023 (301)
2025 (264)
2024 (236)
2020 (211)
2015 (161)
2019 (160)
2018 (153)
2017 (145)
2016 (144)
2014 (107)
2013 (104)
2011 (86)
2012 (79)
2010 (60)
2009 (37)
2026 (33)
2008 (29)
2005 (24)
2007 (21)
2004 (15)
2006 (13)
2003 (12)
2002 (10)
2001 (9)
1999 (8)
2000 (4)
1998 (2)

Lab affiliation

Immunopathology of Virus Infections Institute of Virology Technical University of Munich Munich, Germany (4)
Institute of Virology - Viral Immunopathology, Faculty of Medicine, Technical University Munich (4)
Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (4)
Cambridge Institute for Medical Research, University of Cambridge (2)
Cambridge Institute for Medical Research, University of Cambridge, Hills Road, Cambridge, CB2 0XY, UK (2)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 344, Heidelberg, Germany (2)
Leibniz Institute for Virology (LIV), Germany; Centre for Structural Systems Biology (CSSB), Germany; University of Siegen, Germany; Deutsches Elektronen-Synchrotron (DESY), Germany; European XFEL GmbH, Germany. (2)
1) Medizinisches Proteom-Center, Ruhr-Universität Bochum, Universitätsstraße 150, 44801 Bochum, Germany 2) Institute of Virology, University Hospital, University Duisburg-Essen, Hufelandstr. 55, 45120 Essen, Germany (1)
Associate Professor Systems Virology Department of Translation medicine Faculty of Medicine Lund University Sweden (1)
Associate Professor in Virology Head of Systems Virology group Department of Translational Medicine Lund University (1)
CSSB Centre for Structural Systems Biology, Deutsches Elektronen Synchroton DESY, Leibniz Institute of Virology, Germany; University of Luebeck, Institute for Chemistry and Metabolomics (1)
Cambridge Institute for Medical Research, University of Cambridge, CB2 0XY, UK (1)
Centre for Structural Systems Biology CSSB, Deutsches Elektronen-Synchrotron DESY & Leibniz Institute of Virology (LIV) & University of Lübeck, Notkestr. 85, 22607 Hamburg, Germany Institute of Chemistry and Metabolomics, University of Lübeck, Ratzeburger Allee 160, 23562 Lübeck, Germany (1)
Centre for Structural Systems Biology, Leibniz Institute of Virology (LIV), Faculty V: School of Life Sciences, University of Siegen, Deutsches Elektronen-Synchrotron (DESY) (1)
Department of Cellular and Molecular Pharmacology (1)
Department of Infectious Diseases and the Key Lab of Endogenous Infection, Shenzhen Nanshan People's Hospital and The 6th Affiliated Hospital of Shenzhen University Health Science Center, Shenzhen 518052, China (1)
Department of Microbiology and Immunology, Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599 (1)
Department of Rickettsiology Biomedical Research Center Sloval Republic (1)
Dr. Pietro Scaturro, Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (1)
Heinrich Pette Institute, Leibniz Institute for Experimental Virology, Germany; European XFEL GmbH, Germany (1)
Institute for Virology, Hannover Medical School, 30625 Hannover, Germany (1)
Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai, China. (1)
Leibniz Institute for Experimental Virology (HPI), Germany; Centre for Structural Systems Biology, Germany; 5European XFEL GmbH, Germany. (1)
Leibniz Institute for Virology (1)
Leibniz Institute of Virology (LIV), Hamburg, Germany (1)
Systems Arbovirology - Leibniz Institute for Experimental Virology (1)
Systems Arbovirology lab, Leibniz Institute of Virology, Hamburg, Germany (1)
Systems Arbovirology, Leibniz Institute of Virology (LIV), Hamburg, Germany (1)
Systems Arbovirology, Leibniz Institute of Virology (LIV), Hamburg, Germany (1)
Technical University of Munich, School of Medicine, Institute of Virology, 81675 Munich, Germany (1)

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Multi-layer omics dataset for cross-species translational systems biology

Inferring in humans biological responses to external cues such as drugs, chemicals, viruses and hormones, is an essential question in biomedicine and cannot be easily studied in humans. Thus, biomedical research has continuously relied on animal models for studying the impact of these compounds and ...

ORGANISM(S): Rattus norvegicus

2014-06-10 | E-MTAB-2091 | biostudies-arrayexpress

Hantavirus Replication Cycle-An Updated Structural Virology Perspective.

Not available

S-EPMC8402763 | biostudies-literature

Research priority-setting for human, plant, and animal virology: an online experience for the Virology Institute of the Philippines.

Not available

S-EPMC8082216 | biostudies-literature

SCL006,icSARS CoV Urbani or icSARS Bat SRBD (spike receptor binding domain from the wild type strain Urbani to allow for infection of human and non-human primate cells) infections of the 2B4 clonal derivative of Calu-3 cells - Time course

Purpose of experiment was to compare transcriptomics of 2B4 cells (clonal derivative of Calu-3 cells) infected with either icSARS CoV or the icSARS deltaORF6 mutant. Calu-3 cells were infected with either icSARS CoV or the cSARS Bat SRBD strain at MOI of 1.0. Cells samples were collected at 0, 7, 1...

ORGANISM(S): Homo sapiens

2012-05-06 | E-GEOD-37827 | biostudies-arrayexpress

The Impact of Mass Spectrometry-Based Proteomics on Fundamental Discoveries in Virology.

Not available

S-EPMC6889812 | biostudies-literature

COVID-19 for the Cardiologist: Basic Virology, Epidemiology, Cardiac Manifestations, and Potential Therapeutic Strategies.

Not available

S-EPMC7151394 | biostudies-literature

Structural puzzles in virology solved with an overarching icosahedral design principle.

Not available

S-EPMC6765026 | biostudies-literature

Decoding pathogenesis factors involved in the progression of ATLL or HAM/TSP after infection by HTLV-1 through a systems virology study.