tissue-clearing

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Unknown (636)
Transcriptomics (81)
Genomics (69)
Proteomics (24)
Other (4)
Metabolomics (3)
Models (1)

Organisms

Mus musculus (56)
Aerococcus urinae NBRC 15544 = CCUG 36881 (23)
Andropogon gerardi (23)
Bacteria (23)
Canis lupus familiaris (23)
Cnidaria (23)
Ectopseudomonas oleovorans CECT 5344 (23)
Ensifer adhaerens (23)
Enterococcus faecalis (23)
Globicatella sanguinis (23)
Halictus scabiosae (23)
Human immunodeficiency virus 1 (23)
Mesocricetus auratus (23)
Methylohalobius crimeensis 10Ki (23)
Miscanthus x giganteus (23)
Mus musculus (23)
Panicum virgatum (23)
Pseudomonas aeruginosa SJTD-1 (23)
Homo sapiens (19)
Rattus norvegicus (9)
Gallus gallus (2)
Drosophila melanogaster (2)
Mus (2)
Bos taurus (1)
Arabidopsis thaliana (1)
Bubalus bubalis bubalis (1)
HIV-1 group M (1)
synthetic construct (1)
Macaca mulatta (1)
Danio rerio (1)

Organisms

Mus musculus (41)
Homo sapiens (9)
Rattus norvegicus (2)
Mus (1)
Macaca mulatta (1)
Danio rerio (1)

Repository

ENA (62)
geo (51)
biostudies-arrayexpress (40)
pride (23)
MetaboLights (3)
BioModels (1)
EVA (1)
iProX (1)

Tissue

Heart (4)
Bone marrow (2)
Brain (2)
Cell culture (2)
Ovary (2)
Testis (2)
Breast (1)
Embryo (1)
Embryonic cerebral cortex (1)
Esophagus (1)
Kidney (1)
Liver (1)
Lung (1)
Lymphocyte (1)
Macrophage (1)
Rheumatoid arthritis disease specific synovial fluid (1)
Sciatic nerve (1)
Skin (1)
Spleen (1)
Urinary bladder (1)

Disease

Alzheimer's disease (1)
Breast cancer (1)
Esophagus squamous cell carcinoma (1)
Obesity (1)
Testicular cancer (1)
Transthyretin amyloidosis (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (23)
Shotgun proteomics (11)
Bottom-up proteomics (5)
Data-independent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (3)
Mass spectrometry (2)
Mass spectrometry assay (1)
Gel-based experiment (1)
Glycoproteomics (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
NextSeq 2000 (1)
Illumina HiSeq 2000 (1)
NextSeq 500 (1)
AB 3300 Genetic Analyzer (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2026 (19)
2025 (17)
2024 (11)
2022 (10)
2013 (9)
2021 (7)
2014 (6)
2019 (5)
2015 (4)
2011 (4)
2010 (4)
2023 (4)
2012 (3)
2008 (3)
2020 (3)
2009 (2)
2007 (2)
2006 (2)
2017 (2)
2004 (1)
2018 (1)

Metabolite Name

PS(O-42:7) PS(P-42:6) (1)
PS(O-42:6/P-42:5)d (1)
PS(O-42:6/P-42:5)b (1)
PS(O-42:6/P-42:5)a (1)
PS(O-42:5/P-42:4) (1)
PS(O-42:3/P-42:2) (1)
PS(O-42:2) PS(P-42:1) (1)
PS(O-40:6/P-40:5)c (1)
PS(O-40:6) PS(P-40:5)b (1)
PS(O-40:6) PS(P-40:5)a (1)
PS(O-40:5/P-40:4)c (1)
PS(O-40:5/P-40:4)b (1)
PS(O-40:5) PS(P-40:4)a (1)
PS(O-40:4/P-40:3) (1)
PS(O-40:3) PS(P-40:2) (1)
PS(O-40:2/P-40:1) (1)
PS(O-40:0) (1)
PS(O-38:6) PS(P-38:5) (1)
PS(O-38:5) PS(P-38:4) (1)
PS(O-38:4/P-38:3) (1)
PS(O-38:3/P-38:2) (1)
PS(O-38:2) PS(P-38:1) (1)
PS(O-38:1) PS(P-38:0) (1)
PS(O-36:3/P-36:2)a (1)
PS(O-34:0) (1)
PS(44:8)b (1)
PS(44:6) (1)
PS(44:5)b (1)
PS(44:5)a (1)
PS(44:4)b (1)

IsPrivate

False (1)

First Public Date

2025 (17)
2026 (13)
2024 (8)
2022 (7)
2021 (5)
2014 (5)
2020 (3)
2023 (1)
2019 (1)
2017 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (28)
RNA-seq of coding RNA (5)
ChIP-seq (3)
Transcription profiling by SAGE (1)
Unknown experiment type (1)
Spatial transcriptomics by high-throughput sequencing (1)
RNA-seq of total RNA (1)

Release Date

2025 (90)
2022 (85)
2021 (73)
2023 (70)
2024 (60)
2020 (53)
2019 (47)
2018 (45)
2017 (36)
2016 (22)
2015 (21)
2026 (16)
2014 (15)
2013 (7)
2012 (7)
2010 (7)
2011 (5)
2008 (5)
2009 (4)
2006 (3)
2007 (2)
2004 (1)
2005 (1)
2003 (1)

Lab affiliation

Helmholtz Munich (2)
, Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (lab head) (1)
Biognosys AG (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada. (1)
Department of Biology, University of York, UK (1)
Department of Biomedical Sciences, Affiliated with The Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen. (1)
Department of Biomolecular Sciences. Weizmann Institute of Science. Rehovot, Israel (1)
Department of Molecular and Cellular Biology, University of Geneva, Geneva, Switzerland (1)
Department of Pharmaceutical Sciences, University of Illinois College of Pharmacy,Chicago,IL,USA Richard and Loan Hill Department of Biomedical Engineering, University of Illinois College of Engineering,Chicago, IL,USA University of Illinois Cancer Center,Chicago, IL,USA (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Germany (1)
Developmental Biology of the Innate Immune System Life & Medical Sciences Institute (LIMES) University of Bonn, Germany (1)
Director, Institute for Tissue Engineering and Regenerative Medicine (iTERM) Helmholtz Zentrum München Ingolstädter Landstraße 1 85764 Neuherberg Germany (1)
Division of Endocrinology, Diabetes and Metabolism, Department of Medicine, University of Illinois Chicago, Chicago, Illinois, USA (1)
Institute for tissue engineering and regenerative medicine, Helmholtz Center Munich (1)
Institute of Bioinformatics, 7th floor, Discoverer Building, International Tech Park, Bangalore, 560 066, India (1)
Laboratoire de Spectrométrie de Masse Protéomique (LSMP) Institut Curie (1)
Max Planck Institute of Immunobiology and Epigenetics Proteomics Unit Stuebeweg 51 79108 Freiburg, Germany (1)
Research Center of IPO Porto (CI-IPOP)/CI-IPOP@RISE (Health Research Network), Portuguese Oncology Institute of Porto (IPO Porto)/Porto Comprehensive Cancer Center Raquel Seruca (Porto.CCC) (1)
Translational Biomarkers, Aalborg University, Denmark (1)
UCLouvain Institut de Recherche Expérimentale et Clinique Pôle de Recherche en Gynécologie Avenue Mounier, 52 Bte. B1.52.02 1200 Bruxelles, Belgique (1)
University of Edinburgh (1)
University of Wisconsin-Madison (1)