3d modeling of proteins

Show results for

Unknown (607)
Transcriptomics (61)
Genomics (34)
Proteomics (30)
Other (4)
Models (2)
Metabolomics (1)

Organisms

Homo sapiens (44)
Mus musculus (16)
Saccharomyces cerevisiae (8)
Yersinia pseudotuberculosis IP 32953 (4)
Rattus norvegicus (3)
Arabidopsis thaliana (3)
Bos taurus (3)
Rhodospirillum rubrum (2)
Macaca mulatta (2)
Escherichia coli (2)
Trichoderma atroviride (1)
Trichoderma reesei (1)
Phaeodactylum tricornutum (1)
Schistosoma mansoni (1)
Zea mays (1)
Schizosaccharomyces pombe (1)
Saccharomyces cerevisiae S288C (1)
Streptococcus pneumoniae (1)
Haloferax volcanii (1)
Pichia kudriavzevii (1)
Capra hircus (1)
Lama (1)
Leishmania donovani (1)

Organisms

Homo sapiens (15)
Haloferax volcanii (1)
Drosophila melanogaster (1)
Rattus norvegicus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (61)
pride (22)
ENA (21)
geo (18)
MassIVE (7)
BioModels (1)
Cell Collective (1)
MetaboLights (1)

Tissue

Cell culture (4)
Fibroblast (2)
Heart (2)
Mammary gland (2)
B cell (1)
Brain (1)
Cell suspension culture (1)
Embryonic stem cell (1)
IMR-90 cell (1)
Multipotent stem cell (1)
Pancreas (1)
Permanent cell line cell (1)
Pluripotent stem cell (1)
Skeletal muscle (1)
Skeletal muscle myoblast in skeletal muscle (1)
Skin (1)

Disease

Glioblastoma (2)
Cardiovascular system disease (1)
Congenital disorder of glycosylation (1)
Duchenne muscular dystrophy (1)
Myotonic dystrophy type 1 (1)
Plasmacytoma (1)
Prostate adenocarcinoma (1)

Technology Type

Mass Spectrometry (22)
Shotgun proteomics (8)
Bottom-up proteomics (7)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Data-dependent acquisition (3)
Data-independent acquisition (2)
Gel-based experiment (2)
Top-down proteomics (2)
Mass spectrometry (1)
HDMSE (1)
MSE (1)

Instrument Platform

Q Exactive (3)
Illumina HiSeq 2500 (2)
NextSeq 500 (2)
Illumina NovaSeq 6000 (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion ETD (1)
Orbitrap Fusion Lumos (1)
TimsTOF Pro (1)
MS Imaging - (1)

Publication Date

2024 (13)
2015 (13)
2013 (11)
2011 (10)
2016 (9)
2025 (9)
2014 (7)
2020 (6)
2023 (5)
2022 (5)
2010 (5)
2026 (5)
2019 (4)
2021 (2)
2018 (2)
2012 (1)
2009 (1)
2017 (1)

IsPrivate

False (1)

Submitter Keywords

Machine Learning Model (1)

First Public Date

2024 (7)
2025 (6)
2022 (2)
2021 (2)
2026 (1)
2023 (1)
2020 (1)
2019 (1)

Modelling Approach

Finite element spatial model (1)

Study type

Transcription profiling by array (27)
ChIP-seq (11)
Transcription profiling by tiling array (5)
RNA-seq of coding RNA (5)
RIP-chip by array (2)
ChIP-chip by tiling array (2)
GRO-seq (1)
Unknown experiment type (1)
MNase-seq (1)
ChIP-chip by array (1)
Hi-C (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)

Release Date

2024 (68)
2023 (62)
2021 (59)
2022 (52)
2025 (50)
2019 (46)
2020 (41)
2016 (40)
2015 (37)
2017 (33)
2013 (28)
2011 (28)
2014 (24)
2012 (20)
2010 (19)
2018 (17)
2026 (13)
2009 (6)
2008 (6)
2007 (5)
2006 (4)
2005 (4)
2001 (2)
1998 (2)
2004 (1)
2003 (1)

Lab affiliation

Elson S. Floyd College of Medicine, Washington State University Spokane (2)
1Institute of Lung Health and Immunity, Comprehensive Pneumology Center Munich with the CPC-M bioArchive, Helmholtz Center Munich, Research Center for Environmental Health, Member of the German Center of Lung Research (DZL), Germany (1)
Associate Professor, Department of Laboratory Medicine, UCSF (1)
Chief Scientific Officer, BioFrontiers Institute Distinguished Professor, Department of Molecular, Cellular, and Developmental Biology Professor, Howard Hughes Medical Institute (1)
Department of Laboratory Medicine and Pathology Mayo Clinic, Rochester, Minnesota 55905 United States (1)
Department of Pharmaceutical Chemistry and Bioanalytics Center for Structural Mass Spectrometry Institute of Pharmacy Martin Luther University Halle-Wittenberg (1)
Director, Proteome Center Rostock, University of Rostock, Germany (1)
Evolved.Bio, 280 Joseph Street, Kitchener, Ontario, Canada (1)
Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Haifa, Israel (1)
Helmholtz Pioneer Campus, Helmholtz Zentrum München, Munich, Germany and Medical Faculty, Technical University of Munich, Munich, Germany (1)
Institute of Dairy Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; (1)
Institute of Molecular Genetics of the Czech Academy of Sciences (1)
Lab of Neuroproteomics, Institute of Biology, Department of Biochemistry and Tissue Biology, University of Campinas (UNICAMP), Campinas, Brazil. (1)
Laboratory of Translational Mass Spectrometry and Neuroproteomics, IQ-UFRJ (1)
Mass Spectrometry and Protein Chemistry Institute of Molecular Pathology Institute of Molecular Biotechnology (1)
NBE-DMPK Innovative BioAnalytics, Merck Serono RBM S.p.A., an affiliate of Merck KGaA, Darmstadt, Germany, Via Ribes 1, 10010 Colleretto Giacosa (TO) (1)
Proteomics Platform CIC bioGUNE Bizkaia Tech. Park Build. 800 48160 Derio Spain (1)
School of Biomedical Sciences, The University of Queensland, St Lucia 4072, Queensland, Australia. (1)
Univ. Lille, CNRS, USR 3290, MSAP, Miniaturisation pour la Synthèse l'Analyse et la Protéomique, F-59 000 Lille, France (1)
University of Victoria, Department of Mechanical Engineering, PO Box 1700 STN CSC, Victoria, BC, V8W 2Y2, Canada (1)
Laboratoire MSAP UAR 3290 CNRS Bâtiment C4 Avenue Paul Langevin Cité Scientifique 59655 Villeneuve D'ascq 03 20 33 71 12 https://msap-lab.fr/ (1)

Tags

xref:PubMed:39402206 (7)
xref:PubMed:40360814 (5)
xref:PubMed:32905824 (1)
xref:PubMed:37349353 (1)
xref:PubMed:35462988 (1)
xref:PubMed:33854237 (1)
xref:PubMed:31168090 (1)

Previous page
1 / 74
You're on page 1
page 2
page 3
page 4
page 5
page ...
page 74
Next page

Sort by:

Relevance

Page size

Xenografted Tumor decellularization provides cell-specific in vitro 3D environment

In vitro cell culture studies are common in cancer research field, and reliable biomimetic 3D models are needed to ensure physiological relevance. In this manuscript, we hypothesized that decellularized xenograft tumors can serve as an optimal 3D substrate to generate a top-down approach for in vitr...

ORGANISM(S): Homo sapiens (Human) Mus musculus (Mouse)

2022-09-12 | PXD034597 | Pride

Evolution, gene expression profiling and 3D modeling of CSLD proteins in cotton.

Not available

S-EPMC5504666 | biostudies-literature

Multi-layer sequential network analysis improves protein 3D structural classification.

Not available

S-EPMC9356989 | biostudies-literature

Metal-Coordination Specificity and Structural Dynamics of C. elegans Metallothionein I: Insights From 3D Modeling and MD Simulations.

Not available

S-EPMC12779199 | biostudies-literature

in vivo-like scaffold-free 3D in vitro Models of Muscular Dystrophies: The Case for Anchored Cell Sheet Engineering in Personalized Medicine

The study of muscle dystrophies, including Duchenne and Myotonic dystrophies, has faced significant challenges due to the lack of physiologically relevant in vitro models. This research introduces a novel, scaffold- and biomaterial-free platform based on cell sheet engineering to create in vitro mod...

ORGANISM(S): Homo sapiens (Human)

2024-12-24 | PXD052728 | Pride

Drug treatment In vitro model Cell sheet engineering Scaffold-free Proteomics Dystrophy Skeletal muscle

Assessment of 3D models for allergen research.

Not available

S-EPMC3593753 | biostudies-literature

3D structural models of transmembrane proteins.

Not available

S-EPMC3178832 | biostudies-literature

Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes.

Not available

S-EPMC2593650 | biostudies-literature