Actinobacteria - OmicsDI

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Unknown (5137)
Genomics (3702)
Metabolomics (67)
Transcriptomics (62)
Proteomics (51)
Other (9)
Models (1)
Methylation profiling (1)

Organisms

Corynebacterium glutamicum (11)
Corynebacterium glutamicum R (9)
Homo sapiens (8)
Saccharopolyspora erythraea (5)
Bacteria (5)
Streptomyces venezuelae (4)
Streptomyces coelicolor A3(2) (4)
Streptomyces coelicolor (4)
Thermus thermophilus HB8 (3)
Casuarina glauca (3)
Mycolicibacterium smegmatis (3)
Corynebacterium glutamicum ATCC 13032 (3)
Frankia alni ACN14a (2)
environmental samples (2)
Folsomia candida (2)
uncultured bacterium (2)
Alnus glutinosa (2)
mixed sample (2)
Archaea (2)
soil metagenome (1)
Pseudomonas aeruginosa (1)
Streptomyces auratus (1)
chicken gut metagenome (1)
Aurantimicrobium photophilum (1)
Rhodoluna lacicola (1)
Frankia casuarinae (1)
Gluconobacter oxydans (1)
Streptomyces lividans (1)
Mycobacterium tuberculosis variant bovis (1)
Penicillium expansum (1)

Organisms

Actinomycetota bacterium (941)
soil metagenome (31)
Corynebacterium glutamicum R (9)
freshwater metagenome (9)
Streptomyces (8)
marine metagenome (8)
Homo sapiens (7)
Bacteria (6)
human gut metagenome (6)
uncultured bacterium (5)
mixed culture metagenome (5)
Micromonospora echinospora (4)
Actinomycetes (4)
synthetic metagenome (4)
plant metagenome (4)
endophyte metagenome (4)
Actinobacteria bacterium 24AS0 (3)
Streptomyces sp. GMY02 (3)
Streptomyces griseorubiginosus (3)
Saccharopolyspora erythraea (3)
Actinomycetota (3)
Kitasatospora aureofaciens (3)
aerosol metagenome (3)
compost metagenome (3)
Bifidobacterium longum (3)
Corynebacterium glutamicum ATCC 13032 (3)
insect gut metagenome (3)
Streptomyces sp. (3)
sediment metagenome (3)
rhizosphere metagenome (3)

Repository

ENA (3649)
GNPS (57)
NODE (44)
geo (39)
biostudies-arrayexpress (36)
pride (27)
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EGA (3)
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jPOST (2)
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GPMDB (1)

Tissue

Cell culture (3)
Blood serum (1)
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Colon (1)
Feces (1)
Gut (1)
Leaf (1)
Plant cell (1)
Prokaryotic cell (1)

Disease

Not Available (1)
Allergic asthma (1)
Disease free (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (27)
Shotgun proteomics (22)
Mass spectrometry (8)
Bottom-up proteomics (4)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
Data-independent acquisition (1)
DiaPASEF (1)
HDMSE (1)
Metaproteomics (1)
SWATH MS (1)
Two Dimensional Polyacrylamide Gel Electrophoresis (1)

Instrument Platform

Q Exactive|MS:1001911 (20)
Q Exactive (8)
MicrOTOF-Q II (6)
Q Exactive HF-X (5)
Illumina HiSeq 2000 (4)
LTQ Orbitrap (4)
SYNAPT G2-Si (4)
Xevo G2 Q-Tof (4)
NextSeq 500 (2)
HiRes ESI (2)
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Thermo Scientific Exactive mass spectrometer with Dionex UltiMate 3000 U-HPLC (2)
15 mL Falcon tubes (1)
ScriptSeq v2 Complete Gold Kit (Epidemiology)(Epicentre), ScriptSeq Index PCR primers (Set 1) (Epicentre) (1)
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DNBSEQ-G400 (1)
Agilent 1290 (1)
Agilent QTOF (1)
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Bruker micrOTOF-QII (1)
IMS-qToF-MS (SynaptG2-Si, WatersCorporation) (1)
LTQ Velos (1)
MicroTOF LC (1)
Orbitrap Eclipse (1)
Orbitrap Exploris 240 (1)
Shimadzu 9030 QTOF mass spectrometer (1)

Publication Date

2022 (31)
2024 (21)
2023 (21)
2018 (15)
2020 (13)
2021 (12)
2016 (11)
2025 (10)
2014 (10)
2015 (9)
2012 (8)
2010 (8)
2011 (6)
2019 (5)
2026 (4)
2017 (3)
2013 (2)
2009 (1)
2007 (1)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:137423 (1)
CHEBI:137422 (1)
CHEBI:137421 (1)
CHEBI:137420 (1)
CHEBI:137418 (1)
CHEBI:137417 (1)
CHEBI:137416 (1)
CHEBI:137414 (1)
CHEBI:137413 (1)
CHEBI:53455 (1)
CHEBI:16016 (1)
CHEBI:35053 (1)
CHEBI:176365 (1)
CHEBI:32278 (1)
CHEBI:32368 (1)
CHEBI:17537 (1)
CHEBI:74876 (1)
CHEBI:9592 (1)
CHEBI:182146 (1)
CHEBI:15245 (1)
CHEBI:39199 (1)
CHEBI:81816 (1)
CHEBI:75988 (1)
CHEBI:38452 (1)
CHEBI:73129 (1)
CHEBI:183957 (1)
CHEBI:187382 (1)
CHEBI:16265 (1)
CHEBI:191172 (1)
CHEBI:9163 (1)

Metabolite Name

Thromboxane B2 (3)
Xanthine (3)
Inosine (3)
4-Chloro-3-ethoxy-7-guanidinoisocoumarin (2)
Dioxidine (2)
5-Methyleriodictyol 7-[glucosyl-(1->4)-galactoside] (2)
ZOPOLRESTAT (2)
[(2S,3S,4R,5R)-3,4,5,6-Tetrahydroxyhexan-2-yl] 2-hydroxypropanoate (2)
5-[(Aminooxy)sulfonyl]-2,4-dichlorobenzoic acid (2)
Urolithin C 3-glucuronide (2)
Enalkiren (2)
17-Hydroxypregnenolone 3-sulfate (2)
Triethylene glycol bis(3-tert-butyl-4-hydroxy-5-methylphenyl)propionate (2)
Calcifediol lactone (2)
Edulisin IV (2)
1-O-Caffeoyl-beta-D-glucose (2)
Sulforidazine (2)
(beta-1-O-[N-(2-formyl-3-chlorophenyl)anthraniloyl]-D-glucupyranuronic acid) (2)
2-(2-Chlorophenyl)-2-(6,7-dihydro-4H-thieno[3,2-c]pyridin-5-yl)propanedioic acid (2)
N-Docosahexaenoyl Glutamine (2)
5,10-Methylenetetrahydromethanopterin (2)
ADP Ribose (2)
Eperezolid (2)
Agar (2)
Apimaysin (2)
Benzyl 6-O-beta-D-apiofuranosyl-beta-D-glucoside (2)
Glucose pyruvate lactate (2)
12-Hydroxyjasmonic acid glucoside (2)
N-Methoxysuccinyl-Ala-Ala-Pro-Val (2)
Gladiatoside C1 (2)

IsPrivate

False (1)

Submitter Keywords

FROG (1)

First Public Date

2025 (1895)
2019 (218)
2021 (209)
2020 (199)
2016 (174)
2018 (160)
2015 (153)
2017 (136)
2024 (106)
2023 (93)
2013 (92)
2022 (88)
2026 (74)
2014 (41)
2012 (10)
2010 (1)

Classification

bacteria (39)
fungi (1)
viruses (1)

Modelling Approach

Constraint-based model (1)

Study type

Transcription profiling by array (18)
RNA-seq of coding RNA (6)
High-throughput sequencing (3)
Other (3)
ChIP-chip by array (2)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
One-color microarray (1)
Comparative genomic hybridization by array (1)

Release Date

2022 (669)
2021 (607)
2023 (526)
2020 (484)
2024 (395)
2019 (367)
2018 (366)
2025 (307)
2017 (275)
2016 (259)
2015 (202)
2013 (152)
2014 (144)
2012 (99)
2011 (77)
2010 (44)
2009 (40)
2008 (33)
2026 (24)
2007 (23)
2005 (21)
2006 (20)
2003 (14)
2004 (11)
2002 (6)
2001 (3)
2000 (3)
1999 (2)

Lab affiliation

Institute of Biology Leiden, Leiden University (4)
CEA-Marcoule, DSV-iBEB-SBTN-LBSP, 30207 Bagnols-sur-Cèze, France (3)
1 School of Chemistry, University of Melbourne, Parkville, Victoria 3010, Australia. 2 Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, Victoria 3010, Australia (1)
1. Department of Veterinary Science and Public Health (DIVET), University of Milan 2. Istituto Sperimentale Italiano Lazzaro Spallanzani, Milano (1)
1UNSW Water Research Centre, School of Civil and Environmental Engineering, University of New South Wales, Sydney, NSW 2052, Australia (1)
Actinobacteria Laboratory, PROIMI-CONICET, Tucuman-Argentina (1)
CONACYT-Centro de Investigación en Alimentación y Desarrollo A.C. Laboratorio de Bioquímica de Proteínas y Glicanos Carretera Gustavo Enrique Astiazarán Rosas No. 46 Colonia La Victoria. Código Postal 83304 Hermosillo, Sonora. México. +52 662 2892400 ext. 513 (1)
CSIRO Agriculture and Food, 306 Carmody Rd, St Lucia QLD 4067, Australia (1)
Chemical and Biological Engineering Department, The Hong Kong University of Science and Technology (HKUST) (1)
College of Biology, Hunan University (1)
Department Molekulare Systembiologie Helmholtz-Zentrum für Umweltforschung GmbH - UFZ Permoserstraße 15 04318 Leipzig (1)
Faculty of Life Sciences,Bar-Ilan University, Israel (1)
Institute of Organic Chemistry and Biochemistry CAS (1)
LSU Health Sciences Center School of Medicine Department of Biochemistry and Molecular Biology LSUHSC Proteomics Facility New Orleans, LA 70112 (1)
Microbiology Department Ludwig-Maximilians-Universität München Biozentrum Department Biologie I, Ber. Mikrobiologie Großhaderner Str. 2-4 82152 Martinsried http://www.mikrobiologie.biologie.uni-muenchen.de/personen/kjung/jung_k/index.html (1)
Pacific Northwest National Laboratory, USA (1)
State Key Laboratory of Marine Environmental Science / College of the Environment and Ecology, Xiamen University, China (1)
Systems Biology Laboratory, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency (1)
University of Greifswald, Institute of Microbiology, Department of Microbial Proteomics, Felix-Hausdorff-Str. 8, 17489 Greifswald, Germany (1)
University of Leicester, Department of Infection, Immunity & Inflammation and Molecular and Cell Biology, United Kingdom (1)
University of Zurich, Institute of Medical Microbiology, Zurich, Switzerland (1)
eilika@mol.biol.ethz.ch (1)

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Biosynthesis of Isonitrile Lipopeptides by Conserved Non-ribosomal Peptide Synthetase Gene Clusters in Actinobacteria

A putative lipopeptide biosynthetic gene cluster is conserved in many species of Actinobacteria, including Mycobacterium tuberculosis and Mycobacterium marinum, but the specific function of the encoding proteins has been elusive. Using both in vivo heterologous reconstitution and in vitro biochemica...

2017-07-18 | MTBLS454 | MetaboLights

Actinobacteria bacterium IMCC26207

Actinobacteria bacterium IMCC26207 Genome sequencing and assembly

PRJNA281022 | ENA

Actinobacteria bacterium OK006

Actinobacteria bacterium OK006 Genome sequencing and assembly

PRJNA271673 | ENA

Actinobacteria bacterium OK074

Actinobacteria bacterium OK074 Genome sequencing and assembly

PRJNA271675 | ENA

Actinobacteria bacterium OV320

Actinobacteria bacterium OV320 Genome sequencing and assembly

PRJNA271678 | ENA

Actinobacteria bacterium OV450

Actinobacteria bacterium OV450 Genome sequencing and assembly

PRJNA271676 | ENA

A general multipronged activation approach for natural product discovery in Actinomycetes 54 actinobacterial strains with genetic and cultivation based activation

LC-MS/MS fermentation extract collection of 54 diverse and non-domesticated actinobacterial strains interrogated with a one-step integrase-mediated genetic- and cultivation-based approach to perturb and activate metabolite production in actinobacteria that has significantly increased accessible meta...

ORGANISM(S): Streptomyces Viridochromogenes (ncbitaxon:1938) Streptomyces Abikoensis (ncbitaxon:97398) Thermoactinomyces Vulgaris (ncbitaxon:2026) Streptomyces Albogriseolus (ncbitaxon:1887) Streptomyces Sampsonii (ncbitaxon:42239) Streptomyces Ardesiacus Streptomyces Fradiae (ncbitaxon:1906) Streptomyces Filipinensis (ncbitaxon:66887) Streptomyces Niveiscabiei (ncbitaxon:164115) Streptomyces Odonnellii (ncbitaxon:1417980) Streptomyces Anandii (ncbitaxon:285454) Streptomyces Thermocarboxydus (ncbitaxon:59299) Streptomyces Flaveolus (ncbitaxon:67297) Streptomyces Albofaciens (ncbitaxon:66866) Micromonospora Maris Streptomyces Luridiscabiei (ncbitaxon:164114) Streptomyces Lavendulae (ncbitaxon:1914) Streptomyces (ncbitaxon:1883) Spirillospora Tritici Streptomyces Kronopolitis (ncbitaxon:1612435) Streptomyces Niveoruber (ncbitaxon:68243) Streptomyces Cyaneochromogenes Streptomyces Lunaelactis (ncbitaxon:1535768) Streptomyces Hirsutus (ncbitaxon:35620) Streptomyces Jeddahensis (ncbitaxon:1716141) Streptomyces Tendae Strain Atcc 19812 Micromonospora Oryzae (ncbitaxon:1530046) Streptomyces Nigrescens (ncbitaxon:1920) Streptomyces Durhamensis (ncbitaxon:68194) Streptomyces Variabilis (ncbitaxon:67372) Micromonospora Aurantiaca (ncbitaxon:47850) Streptomyces Tendae (ncbitaxon:1932) Micromonospora Maritima (ncbitaxon:986711) Streptomyces Globisporus (ncbitaxon:1908) Dactylosporangium Solaniradicis (ncbitaxon:1758122)

2023-06-22 | MSV000092237 | MassIVE

A set of synthetic versatile genetic control elements for the efficient expression of genes in Actinobacteria.

Not available

S-EPMC5765039 | biostudies-literature

Actinobacteria bacterium 24AS0

Actinobacteria bacterium 24AS0 overview

PRJNA550164 | ENA

Actinobacteria

Termite worker gut associated Actinobacteria Genome sequencing and assembly

PRJNA545686 | ENA