Adams S S - OmicsDI

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Unknown (5201)
Transcriptomics (140)
Proteomics (93)
Genomics (62)
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Models (4)

Organisms

Homo sapiens (139)
Mus musculus (41)
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Saccharomyces cerevisiae (6)
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Caenorhabditis elegans (2)
Caldicellulosiruptor kronotskyensis (1)
Brucella suis 1330 (1)
Metallosphaera sedula DSM 5348 (1)
Methanococcus maripaludis S2 (1)
Oncorhynchus nerka (1)
Tursiops truncatus (1)
Apis mellifera ligustica (1)
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Saccharomyces uvarum (1)
Pyrococcus furiosus DSM 3638 (1)
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Salmo salar (1)
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Danio rerio (1)

Organisms

Homo sapiens (9)
Bos taurus (3)
Pyrococcus furiosus (1)
gut metagenome (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (148)
pride (82)
EGA (26)
ENA (18)
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geo (10)
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Tissue

Cell culture (8)
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Disease

Disease free (3)
Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Pseudomonas aeruginosa rsmA mutant infected (1)
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Technology Type

Mass Spectrometry (82)
Shotgun proteomics (47)
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Mass spectrometry (12)
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Instrument Platform

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Q Exactive (3)
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NextSeq 500 (2)
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Nuclear Magnetic Resonance (NMR) - (2)
Illumina HiSeq 2000 platform (1)
FACSAria III (1)
GeneChip® Scanner 3000 7G (Affymetrix) (1)
MoFlo XPD (Beckman Coulter, Fullerton, CA, USA) flow cytometer (1)
BD Influx (1)
GenePix 4000A [Axon Instruments] (1)
Axon GenePix 4000B scanning hardware (1)
Illumina MiSeq (1)
Illumina HiSeq 2500 (1)
Illumina HiSeq 4000 (1)
LTQ (1)
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LTQ Orbitrap Elite (1)
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TimsTOF Pro (1)
TripleTOF 5600 (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)

Publication Date

2015 (27)
2018 (23)
2014 (22)
2013 (18)
2012 (17)
2011 (17)
2025 (17)
2023 (15)
2016 (13)
2022 (12)
2019 (12)
2010 (12)
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2020 (9)
2008 (9)
2021 (8)
2026 (7)
2017 (6)
2005 (5)
2009 (3)
2007 (3)
2006 (2)

UNIPROT ID/AC

O81713 (1)
P00451 (1)
P00734 (1)
P00740 (1)
P00742 (1)
P01008 (1)
P08709 (1)
P10646 (1)
P12259 (1)
P13726 (1)
Q8L500 (1)
Q93WK5 (1)
Q9LKL2 (1)
Q9SQI2 (1)

CHEBI ID

CHEBI:16704 (7)
CHEBI:17596 (6)
CHEBI:15428 (5)
CHEBI:16335 (5)
CHEBI:17568 (5)
CHEBI:17802 (5)
CHEBI:18186 (5)
CHEBI:28044 (5)
CHEBI:15354 (4)
CHEBI:15729 (4)
CHEBI:15741 (4)
CHEBI:15891 (4)
CHEBI:16020 (4)
CHEBI:16449 (4)
CHEBI:16737 (4)
CHEBI:16750 (4)
CHEBI:16811 (4)
CHEBI:16865 (4)
CHEBI:17562 (4)
CHEBI:17821 (4)
CHEBI:17822 (4)
CHEBI:18012 (4)
CHEBI:18237 (4)
CHEBI:22653 (4)
CHEBI:22660 (4)
CHEBI:25094 (4)
CHEBI:26271 (4)
CHEBI:26986 (4)
CHEBI:27897 (4)
CHEBI:33699 (1)

Metabolite Name

Adenosine (4)
Cytidine (4)
Inosine (4)
Uric acid (4)
Uridine (4)
1-methylguanosine (3)
5-methylcytidine (3)
5-methyluridine (3)
7-methylguanosine (3)
Acetylcarnitine (3)
Arginine (3)
Betaine (3)
Cholic acid (3)
Choline (3)
Guanosine (3)
Harmalol (3)
Lysine (3)
Phenylalanine (3)
Pseudouridine (3)
Theophylline (3)
1-(beta-D-Ribofuranosyl)-1,4-dihydronicotinamide (2)
1-Aminocyclopropanecarboxylic acid (2)
1-Methyladenosine (2)
1-methyladenosine (2)
1-methylinosine (2)
1-methylpseudouridine (2)
2'-O-methyladenosine (2)
2'-O-methylcytidine (2)
2'-O-methylguanosine (2)
2'-O-methylinosine (2)

First Public Date

2018 (9)
2014 (4)
2025 (3)
2023 (1)
2016 (1)

Modelling Approach

Ordinary differential equation model (3)

Lab affiliation

Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (9)
EMBL Grenoble (5)
Rochester Institute of Technology (4)
Department of Biology, University of Pennsylvania (3)
Cold Spring Harbor Laboratory (2)
The Institute of Cancer Research (2)
95 Institut de Pharmacologie et de Biologie Structurale (IPBS), Université de Toulouse, CNRS, Université Toulouse III - Paul Sabatier (UT3), Toulouse, 31077, France (1)
Associate Professor School of Life Sciences University of Hawaii at Manoa (1)
Associate Professor, Molecular and Cellular Biology Department, University of Arizona (1)
BBSRC Discovery Fellow & BMC Microbiome Managing Editor Arthur Willis Environmental Research Centre University of Sheffield Sheffield S10 1AE (1)
Biochemistry III – Institute for Biochemistry, Genetics and Microbiology – University of Regensburg – Germany (1)
Broad Institute (1)
CRUK Beatson Institute (1)
Center for Theragnosis, Korea Institute of Science and Technology, Republic of Korea (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Department of Biology, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA (1)
Department of Genetics and Genome Sciences, School of Medicine, Case Western Reserve University, Cleveland, Ohio 44106, United States (1)
Department of Genetics and Genome Sciences, School of Medicine, Case Western University (1)
Department of Microbiology and Cell Science, Institute of Food and Agricultural Sciences, Genetics Institute, University of Florida, Gainesville, Florida, 32611 (1)
Department of Molecular Biology, Princeton University, Princeton, NJ, USA (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Department of Urology, Department of Biochemistry and Molecular Biology, Cancer Research Institute, SUNY Upstate Medical University, 750 E. Adams St., Syracuse, NY 13210, USA (1)
Director Institute of Translational and Stratified Medicine, Plymouth University Peninsula Schools of Medicine and Dentistry, UK (1)
Director Institute of Translational and Stratified Medicine, Plymouth University Peninsula Schools of Medicine and Dentistry, UK. (1)
Epigenetics and Stem Cell Biology Laboratory; National Institute of Environmental Health Sciences; National Institutes of Health (1)
Functional Proteomic, ICR (1)
Functional Proteomics, ICR (1)
GlaxoSmithKline (GSK) (1)
IMol Polish Academy of Sciences, Warsaw, Poland (1)
Institute for Biological Resources and Marine Biotechnology (IRBIM) (CNR), Spianata San Raineri, 86, 98121 Messina, Italy (1)

IsPrivate

False (4)

Modification

Not available (1)

Study type

Transcription profiling by array (89)
RNA-seq of coding RNA (18)
ChIP-seq (14)
Comparative genomic hybridization by array (7)
Genotyping by array (4)
Methylation profiling by high throughput sequencing (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
Translation profiling (1)
Animal - High-throughput sequencing (1)
Transcription profiling by tiling array (1)
RNAi profiling by array (1)
Other (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2022 (561)
2021 (553)
2023 (521)
2025 (521)
2024 (504)
2020 (418)
2019 (345)
2018 (307)
2017 (256)
2016 (227)
2015 (212)
2014 (180)
2013 (138)
2012 (129)
2011 (112)
2010 (74)
2009 (68)
2026 (59)
2008 (49)
2006 (26)
2007 (21)
2005 (20)
2004 (13)
2003 (10)
2002 (6)
2000 (6)
2001 (5)
1998 (3)
1997 (3)
1999 (2)

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Molecular Analysis of the Genes Involved in Aroma Synthesis in the Species S. cerevisiae, S. kudriavzevii and S. bayanus var. uvarum in Winemaking

This research work investigates the hybridization of the genes of Saccharomyces bayanus var. uvarum CECT 12600 and S. kudriavzevii IFO1802 employing S. cerevisiae microarrays. Two strains,one S. kudriavzevii and one S. bayanus var. uvarum were employed for the study. The S. cerevisiae strain S288C w...

ORGANISM(S): Saccharomyces uvarum

2014-06-23 | E-GEOD-52446 | biostudies-arrayexpress

Structural and mechanistic investigations of protein S-glycosyltransferases.

Not available

S-EPMC8688163 | biostudies-literature

Transcription profiling of human airway epithelial cells infected with Pseudomonas aeruginosa wild type and rsmA mutant dentifies human transcription factors KLF2 and KLF6 as targets of the P. aeruginosa type III exoenzymes S and Y.

Global expression profiling of airway epithelial cells infected with Pseudomonas aeruginosa and the rsmA mutant. Recent work in our laboratory investigated the impact of RsmA on a number of airway epithelial cell phenotypes including actin depolymerization, cytotoxicity and invasion. These cellular ...

ORGANISM(S): Homo sapiens

2007-10-27 | E-GEOD-4485 | biostudies-arrayexpress

Contribution of ADAM17 and related ADAMs in cardiovascular diseases.

Not available

S-EPMC9301870 | biostudies-literature

Disintegrin and Metalloproteinases (ADAMs [A Disintegrin and Metalloproteinase] and ADAMTSs [ADAMs With a Thrombospondin Motif]) in Aortic Aneurysm.

Not available

S-EPMC9248868 | biostudies-literature

The glycosyltransferase involved in thurandacin biosynthesis catalyzes both O- and S-glycosylation.

Not available

S-EPMC3913795 | biostudies-literature

Comparative genomics of Steinernema reveals deeply conserved regulatory networks in nematodes

Parasitism is a major ecological niche for a variety of nematodes. Multiple nematode lineages have specialized as pathogens, including deadly parasites of insects that are used in biological control. We have sequenced and analyzed the draft genomes and transcriptomes of the entomopathogenic nematode...

ORGANISM(S): Caenorhabditis elegans

2015-06-05 | E-GEOD-68588 | biostudies-arrayexpress

NMR structure of the S-linked glycopeptide sublancin 168.

Not available

S-EPMC3985867 | biostudies-literature

Crystal structures of VAP1 reveal ADAMs' MDC domain architecture and its unique C-shaped scaffold.

Not available

S-EPMC1478178 | biostudies-literature

Single Ion Pair Is Essential for Stabilizing SHP2's Open Conformation.

Not available

S-EPMC12762099 | biostudies-literature