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ProteomicsDual element (C/Cl) isotope analysis indicates distinct mechanisms of reductive dehalogenation of chlorinated ethenes and dichloroethane in Dehalococcoides mccartyi strain BTF08 with defined reductive dehalogenase inventories
Dehalococcoides mccartyi strain BTF08 has the unique property to couple complete dechlorination of tetrachloroethene and 1,2-dichloroethane to ethene with growth by using the halogenated compounds as terminal electron acceptor. The genome of strain BTF08 encodes 20 genes for reductive dehalogenase h...
ORGANISM(S): Dehalococcoides mccartyi BTF08 
2020-06-10 | PXD018558 | Pride
1 Vinyl chloride Dehalococcoides mccartyi strain btf08 Reductive dehalogenation Cis-dichloroethene Compound-specific stable isotope analysis Nlc-ms/ms Tetrachloroethene 2-dichloroethane 
ProteomicsPart2: Dual element (C/Cl) isotope analysis indicates distinct mechanisms of reductive dehalogenation of chlorinated ethenes and dichloroethane in Dehalococcoides mccartyi strain BTF08 with defined reductive dehalogenase inventories
Dehalococcoides mccartyi strain BTF08 has the unique property to couple complete dechlorination of tetrachloroethene and 1,2-dichloroethane to ethene with growth by using the halogenated compounds as terminal electron acceptor. The genome of strain BTF08 encodes 20 genes for reductive dehalogenase h...
ORGANISM(S): Dehalococcoides mccartyi BTF08 
2020-06-25 | PXD018595 | Pride
1 Vinyl chloride Dehalococcoides mccartyi strain btf08 Reductive dehalogenation Cis-dichloroethene Compound-specific stable isotope analysis Nlc-ms/ms Tetrachloroethene 2-dichloroethane 
ProteomicsSulfurospirillum_fermentation - The experiments were done to investigate fermentation and hydrogen production by the Epsilonproteobacterium Sulfurospirillum multivorans and Sulfurospirillum cavolei. they were grown on pyurvate with or without the electron acceptor fumarate. S. multivorans was cultivated additionally with lactate and fumarate to gather information on lactate oxidation.
The experiments were done to investigate fermentation and hydrogen production by the Epsilonproteobacterium Sulfurospirillum multivorans and Sulfurospirillum cavolei. they were grown on pyurvate with or without the electron acceptor fumarate. S. multivorans was cultivated additionally with lactate a...
ORGANISM(S): Sulfurospirillum multivorans 
2018-11-07 | PXD010303 | Pride
Sulfurospirillum hydrogenase hydrogen fermentation 
ProteomicsSulfurospirillum_fermentation_firstData
The experiments were done to investigate fermentation and hydrogen production by the Epsilonproteobacterium Sulfurospirillum multivorans and Sulfurospirillum cavolei. they were grown on pyurvate with or without the electron acceptor fumarate.
ORGANISM(S): Sulfurospirillum multivorans Sulfurospirillum cavolei NBRC 109482 Sulfurospirillum cavolei 
2018-11-07 | PXD010316 | Pride
Sulfurospirillum hydrogenase hydrogen fermentation 
ProteomicsCharacterization of the diphthamide modification of eEF2 in Arabidopsis thaliana
Diphthamide, a post-translationally modified histidine residue of eukaryotic TRANSLATION ELONGATION FACTOR2 (eEF2), is the human host cell-sensitizing target of diphtheria toxin. Diphthamide biosynthesis depends on the 4Fe-4S-cluster protein Dph1 catalyzing the first committed step, as well as Dph2 ...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-08-11 | PXD034873 | Pride
Diphthamide translation elongation factor 2 (eef2) arabidopsis thaliana growth development 
ProteomicsLight/dark incubation of Greenland Ice Sheet microbiomes: protein data
Glacier ice algae of the streptophyte genus Ancylonema live on glaciers globally, including the Greenland Ice Sheet. Each summer these algae bloom despite freezing temperatures, low nutrient availability, and very high light intensities. These algae also survive continual darkness during polar night...
ORGANISM(S): ice metagenome 
2025-09-29 | PXD058696 | Pride
Greenland ice sheet Metaproteomics Metaranscriptomics Dark adaptation Glacier ice algae 
ProteomicsPure and mixed crude extracts of Thauera aromatica K172 and Pseudomonas putida KT2440 for benchmarking GroEL-proteotyping
This dataset has been used to establish GroEL-proteotyping, a targeted proteotyping approach for assessing bacterial community compositions using the taxonomic marker protein GroEL. This dataset contains raw data of two experiments: 1. Pure cultures of T. aromatica (sample names: TA, TB, TC) and P. ...
ORGANISM(S): Thauera aromatica K172 Pseudomonas putida KT2440 
2023-10-27 | PXD046460 | Pride
Shotgun proteomics Taxonomic profiling Chaperon Sds-page Proteotyping Chaperonin Metaproteomics 
ProteomicsAllicin inhibits SARS-CoV-2 replication and abrogates the antiviral host response in the Calu-3 proteome
The Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) pandemic causes a major health burden. Garlic organosulfur compounds, such as the diallyl thiosulfinate allicin exert strong antimicrobial activity against various respiratory pathogens. Here, we investigated the antiviral activity of ...
ORGANISM(S): Homo sapiens (Human) 
2021-06-30 | PXD024375 | Pride
Sars-cov-2/ allicin/ vero e6/ calu-3/ proteome 
ProteomicsProteome of "Candidatus Kuenenia Stuttgartiensis" strain CSTR1 growing planctonically in semi-CSTR reactor
The dataset provides the whole proteome of the anammox bacterium "Candidatus Kuenenia Stuttgartiensis" strain CSTR1 growing planctonically in semi-CSTR reactor. The bacteria were growing at high growth rate (0.33 d-1) (reactor HRT 3d).
ORGANISM(S): Candidatus Kuenenia stuttgartiensis 
2020-11-11 | PXD018553 | Pride
Lc-ms-ms Kuenenia stuttgartiensis Anammox 
ProteomicsGroEL-proteotypbing-based stable isotope probing of Thauera aromatica K172, Pseudomonas putida KT2440, and Escherichia coli BL21(DE3)
This dataset has been used to establish GroEL-SIP, coupling a targeted proteotyping approach for assessing bacterial community compositions using the taxonomic marker protein GroEL with stable isotope probing to link the identified taxa to substrate assimilation. This dataset contains raw data of fo...
ORGANISM(S): Thauera aromatica K172 Escherichia coli BL21(DE3) Pseudomonas putida KT2440 Bacteria 
2024-10-17 | PXD048255 | Pride
Protein-sip Stable isotope probing Groel-proteotyping 
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