Sort   by:  
 Page size 
ProteomicsPure and mixed crude extracts of Thauera aromatica K172 and Pseudomonas putida KT2440 for benchmarking GroEL-proteotyping
This dataset has been used to establish GroEL-proteotyping, a targeted proteotyping approach for assessing bacterial community compositions using the taxonomic marker protein GroEL. This dataset contains raw data of two experiments: 1. Pure cultures of T. aromatica (sample names: TA, TB, TC) and P. ...
ORGANISM(S): Thauera aromatica K172 Pseudomonas putida KT2440 
2023-10-27 | PXD046460 | Pride
Shotgun proteomics Taxonomic profiling Chaperon Sds-page Proteotyping Chaperonin Metaproteomics 
ProteomicsMass Spectrometry Proteotyping-Based Detection and Identification of Staphylococcus aureus, Escherichia coli and Candida albicans in Blood
Bloodstream infections (BSIs), the presence of microorganisms in blood, are potentially serious conditions that can quickly develop into sepsis and life-threatening situations. When assessing proper treatment, rapid diagnosis is the key; besides clinical judgement performed by attending physicians, ...
ORGANISM(S): Candida albicans (Yeast) Escherichia coli Staphylococcus aureus 
2021-07-20 | PXD023033 | Pride
Bloodstream infections Proteotyping Pathogen identification Lc-ms/ms 
ProteomicsFlash proteotyping of microbial isolates by tandem mass spectrometry
Flash proteotyping is a methodology for ultra-fast identification of microorganisns by tandem mass spectrometry. Here, we obtained results on five reference strains and ten new bacterial isolates. The methodology is based on direct sample infusion into the mass spectromete and an original, highly se...
ORGANISM(S): Kocuria rhizophila Microvirga ossetica Staphylococcus warneri Staphylococcus equorum Pseudomonas putida KT2440 Klebsiella aerogenes KCTC 2190 Pseudomonas psychrotolerans Roseomonas mucosa Ruegeria pomeroyi DSS-3 Deinococcus proteolyticus MRP Micrococcus luteus (Micrococcus lysodeikticus) Paenibacillus catalpae Pseudomonas zeshuii 
2023-12-21 | PXD045510 | Pride
Taxonomy Proteomics Isolates Proteotyping Bacteria Identification 
ProteomicsUntargeted virus identification via LC-MS/MS based proteotyping
A novel tandem mass spectrometry proteotyping-based method that offers an untargeted approach for the identification of pathogenic viruses and other components, eliminating the need for a priori knowledge of the sample composition, has been developped.
ORGANISM(S): Vaccinia virus Homo sapiens (Human) Pixuna virus Rio Negro virus Sindbis virus 
2025-05-06 | PXD050318 | Pride
Virus Proteomics Proteotyping 
ProteomicsASTRAL 60 and 90 min in-depth metaproteomics of a human fecal standard to evaluate depth of analysis following a taxonomical proteotyping strategy.
In-depth metaproteomics of a human fecal standard, MetaP, with ASTRAL tandem mass spectometer operated in data-independent acquisition mode for 60 min or 90 min and with a database built following sample taxonomical proteotyping.
ORGANISM(S): Homo sapiens (Human) Balneola vulgaris Deinococcus proteolyticus MRP 
2024-03-07 | PXD046320 | Pride
Metaproteomics Proteins Functional analysis Dia Microbiome Gut Mass spectrometry Proteotyping Taxa 
ProteomicsASTRAL 15 and 30 min in-depth metaproteomics of a human fecal standard to evaluate depth of analysis following a taxonomical proteotyping strategy.
In-depth metaproteomics of a human fecal standard, MetaP, with ASTRAL tandem mass spectometer operated in data-independent acquisition mode for 15 min or 30 min and with a database built following sample taxonomical proteotyping.
ORGANISM(S): Homo sapiens (Human) Balneola vulgaris Deinococcus proteolyticus MRP 
2024-03-07 | PXD046290 | Pride
Metaproteomics Proteins Functional analysis Dia Microbiome Gut Mass spectrometry Proteotyping Taxa 
ProteomicsProteotyping of sets of six microbial isolates by tandem mass spectrometry.
Proteotyping of mixtures of isolates was carried out by shotgun proteomics and phylopeptidomic interpretation to identify the microorganisms at the species taxonomical rank.
ORGANISM(S): Ruegeria pomeroyi Sulfitobacter indolifex Saccharomyces cerevisiae (Baker's yeast) Klebsiella aerogenes Sagittula stellata Marivirga tractuosa 
2024-05-02 | PXD044755 | Pride
Species Proteomics Identification Yeast Taxonomy Bacteria Multiplexing Proteotyping 
ProteomicsTandem mass spectrometry proteotyping of microbial samples isolated from an industrial infrastructure.
Tandem mass spectrometry proteotyping of microbial samples isolated from an industrial infrastructure for identifying their species taxonomical rank.
ORGANISM(S): Limnobacter thiooxidans Cordyceps confragosa Ralstonia pickettii Nevskia ramosa 
2021-09-09 | PXD020976 | Pride
Lc-msms Taxonomy Proteotyping Fungus Eukaryote Bacteria Proteomics 
ProteomicsProteomics of mixtures of specific fractions from microbial isolates for multiplex proteotyping without labeling
This projetc provides tandem mass spectrometry datasets of mixtures of specific fractions from microbial isolates enabling multiplex proteotyping without labeling. A mixture of eleven fractions and a mixture of twenty-one fractions respectively were prepared and analyzed in a single nanoLC-MS/MS run...
ORGANISM(S): Stenotrophomonas maltophilia Serratia marcescens Pseudopedobacter saltans Methylorubrum extorquens Kineococcus radiotolerans Microbacterium oxydans Ralstonia pickettii Sagittula stellata Sphingomonas yabuuchiae 
2025-09-15 | PXD035870 | Pride
Bacterial isolates Proteomics Multiplex Tandem mass spectrometry Taxonomy Proteotyping 
UnknownGroEL-Proteotyping of Bacterial Communities Using Tandem Mass Spectrometry.
Not available
S-EPMC10649880 | biostudies-literature
Sort   by:  
 Page size