Aerobic/anaerobic growth

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Organisms

Saccharomyces cerevisiae (21)
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human oral metagenome (2)
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hydrocarbon metagenome (1)
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CHEBI ID

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Metabolite Name

Adenine (3)
L-Alanine (3)
L-Glutamine (3)
L-Leucine (3)
L-Tyrosine (3)
Uracil (3)
Xanthine (3)
2-Hydroxybutyric acid (2)
AMP (2)
Aminoadipic acid (2)
Arachidic acid (2)
Beta-Alanine (2)
Caproic acid (2)
D-Glucose (2)
D-Ribose (2)
Dodecanoic acid (2)
Fumaric acid (2)
Gamma-Aminobutyric acid (2)
Glyceric acid (2)
Glycolic acid (2)
Hypoxanthine (2)
Inosine (2)
L-Allothreonine (2)
L-Alpha-aminobutyric acid (2)
L-Arginine (2)
L-Asparagine (2)
L-Aspartic acid (2)
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Constraint-based model (7)
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Lab affiliation

Max Planck Institute for Terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (2)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) Technische Universität München Gregor-Mendel-Straße 4 85354 Freising GERMANY (1)
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Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia. Pok Man Leung, pok.leung@monash.edu, Department of Microbiology, Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia Ralf B. Schittenhelm, ralf.schittenhelm@monash.edu, Monash Proteomics and Metabolomics Facility and Department of Biochemistry, Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC 3800, Australia (1)
Department of Microbiology, Monash University, Australia (1)
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ESPCI Paris-PSL/CNRS (1)
Faculity Director: Caltech, Beckman Institute, Proteome Exploration Laboratory (1)
Gade Research Group for Infection and Immunity Dept. of Clinical Science, University of Bergen The Laboratory Building, 5th floor N-5021 Bergen, Norway (1)
General and molecular microbiology, Institute for chemistry and biology of the marine environment (ICBM), Carl von Ossietzky University of Oldenburg, Oldenburg, Germany (1)
Genome Center of Wisconsin,Department of Chemistry, Department of Biomolecular Chemistry, and DOE Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53706, USA Morgridge Institute for Research, Madison, WI 53706, USA (1)
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Interdisciplinary Center for Biotechnology Research, University of Florida (1)
Max Planck Institute for terrestrial Microbiology Karl-von-Frisch Str. 10 35043 Marburg Germany (1)
New York University (1)
Pacific Northwest National Laboratory (1)
Professor, Department of Biology and Biological Engineering, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Wallenberg Center for Protein Research, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Chalmers University of Technology, SE-41296 Gothenburg, Sweden; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Lyngby, Denmark (1)
School of Oceanography, University of Washington (1)
UW Madison (1)
University Medicine Greifswald, Department of Functional Genomics (1)
Winogradsky Institute of Microbiology, Research Center of Biotechnology, RAS. (1)

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FROG (3)

Classification

bacteria (50)

Study type

Transcription profiling by array (123)
RNA-seq of coding RNA (18)
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2000 (7)
1999 (6)
1998 (6)
2001 (4)
1997 (1)

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Fumarate effect on the Escherichia coli proteome at aerobic and anaerobic growth conditions

The changes in protein composition of E. coli were studied in a global proteomic approach for aerobic growth without or with fumarate as carbon source (glycerol + O2, fumarate + O2, respectively) and anaerobic growth without or with fumarate as carbon source (glycerol + DMSO, glycerol + DMSO + fumar...

ORGANISM(S): Escherichia coli

2019-11-20 | PXD011760 | Pride

Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in R. sphaeroides

we performed time series microarray analyses to investigate transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration. Published on J. Bacteriol., 190 (1), 286-299, 2008. Major changes in gene expression profiles occurred in the initial 15 min after the shift ...

ORGANISM(S): Rhodobacter sphaeroides 2.4.1

2008-07-28 | E-GEOD-12269 | biostudies-arrayexpress

FCV-CNRS Aerobic-Anaerobic A. ferrooxidans

Transcriptomic study of A. ferrooxidans was explored either during aerobic growth with sulfur as an electron source and oxygen as final electron acceptor or in anaerobic conditions with ferric iron as the final electron receptor. Differential RNA levels were related to changes in cellular functions ...

ORGANISM(S): Acidithiobacillus ferrooxidans

2012-05-01 | E-MEXP-3361 | biostudies-arrayexpress

Genome Wide Phosphoproteome Analysis of Zymomonas Mobilis under Anaerobic, Aerobic, and N2-Fixing Conditions

Protein phosphorylation is an important post translational modification that plays a major role in cellular regulatory processes in both eukaryotes and prokaryotes. In recent years, aided by advancements in mass spectrometry techniques, there has been a growing interest in studying protein phosphory...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2019-08-08 | PXD014065 | Pride

Proteomics Lumos Zymomonas mobilis

E. coli Anaerobic/aerobic transitions in chemostat

Gene-expression measurements were made over a 20 minute time course as steady state E. coli cells were subjected to an anaerobic to aerobic or an aerobic to anaerobic environmental change.

ORGANISM(S): Escherichia coli

2012-07-17 | E-MTAB-996 | biostudies-arrayexpress

Transcriptome analysis of the archaeon Thermoplasma acidophilum cultured under aerobic and anaerobic conditions

Investigation of whole genome gene expression level changes in Thermoplasma acidophilum cultured under aerobic and anaerobic conditions. The analysis are further described in Na Sun, Cuiping Pan, Stephan Nickell, Matthias Mann, Wolfgang Baumeister, and István Nagy, Quantitative proteome and transcri...

ORGANISM(S): Thermoplasma acidophilum DSM 1728

2011-09-26 | E-GEOD-21956 | biostudies-arrayexpress

Transcription profiling time course of rice germination under anaerobic conditions, aerobic to anaerobic switch and anaerobic to aerobic switch

Transcript abundance profiles were examined over the first 24 hours of germination in rice grown under anaerobic conditions. Transcript abundance profiles were also examined for rice grown under aerobic conditions for 24 h and then switched to anaerobic conditions and vice versa.

ORGANISM(S): Oryza sativa

2009-07-24 | E-MEXP-2267 | biostudies-arrayexpress

Zymomonas mobilis oxygen stress responses

Zymomonas mobilis ZM4 produces near theoretical yields of ethanol with high specific productivity and recombinant strains are able to ferment both C-5 and C-6 sugars. However, the genetic and physiological basis of the ZM4 response to various industrially-relevant stresses is poorly understood. In t...

ORGANISM(S): Zymomonas mobilis

2010-05-18 | E-GEOD-10302 | biostudies-arrayexpress

Expression data of Actinobacillus pleuropneumoniae 4074 under aerobic and anaerobic environment

Actinobacillus pleuropneumoniae is an important porcine respiratory pathogen causing great economic losses in the pig industry worldwide. Oxygen deprivation is a stress that A. pleuropneumoniae will encounter during both early infection and the later, persistent stage. To understand modulation of A....

ORGANISM(S): Actinobacillus pleuropneumoniae serovar 1 str. 4074

2014-06-30 | E-GEOD-39801 | biostudies-arrayexpress

Quantitative Different Analysis of antimicrobial peptide LL37 expressed in E.coli Top 10 under aerobic and anaerobic condition.

We reported the transcriptional profiles of E.coli expressing antimicrobial peptide LL37 under stress response condition. 4 samples, two groups, one group is under aerobic condition, the other group is under anaerobic condition. One of samples is E.coli which expressed LL37 as induction in each gro...

ORGANISM(S): Escherichia coli

2013-08-21 | E-GEOD-43408 | biostudies-arrayexpress

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