Agarwal S S - OmicsDI

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Unknown (2825)
Genomics (182)
Transcriptomics (57)
Proteomics (18)
Metabolomics (14)

Organisms

Caenorhabditis elegans (173)
Homo sapiens (41)
Mus musculus (16)
Saccharomyces cerevisiae (4)
Candida albicans (4)
Rattus norvegicus (3)
Brassica juncea (2)
Bacteria (2)
Oryza coarctata (1)
Streptococcus pyogenes (1)
Oryza sativa (1)
mixed sample (1)
Saccharomyces cerevisiae S288C (1)
Streptococcus pneumoniae (1)
Solanum tuberosum (1)
Triticum aestivum (1)
Dysidea granulosa (1)
Lamellodysidea herbacea (1)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (1)
Asparagopsis taxiformis (1)
Bovine rotavirus strain RF (1)
Klebsiella pneumoniae (1)
Klebsiella pneumoniae ATCC BAA-2146 (1)
Mycobacterium tuberculosis H37Rv (1)
Plasmodium berghei (1)

Repository

biostudies-arrayexpress (235)
pride (16)
MetaboLights (10)
EGA (4)
GNPS (4)
MassIVE (2)

Tissue

Lung epithelium (3)
Blood plasma (2)
Blood serum (1)
Brain (1)
Cell culture (1)
Early embryonic cell (1)
Kidney (1)
Plant cell (1)
Shoot (1)
Spleen (1)
T cell (1)

Disease

Lung adenocarcinoma (3)
Acute promyelocytic leukemia (1)
Acinetobacter infectious disease (1)
Disease free (1)
Glioblastoma (1)
Parkinson's disease (1)
Polycystic ovary syndrome (1)
Prostate cancer (1)

Technology Type

Mass Spectrometry (16)
Mass spectrometry (8)
Shotgun proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (3)
Bottom-up proteomics (3)
Data-dependent acquisition (3)
HDMSE (2)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Gel-based experiment (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (6)
Agilent 6530 Accurate Mass Q-TOF (2)
FastPrep-24 5G bead beater, Qubit Fluorometer (1)
12 well TC-treated plate, LETs buffer, dry ice (1)
Illumina NovaSeq X (1)
N/A (1)
Illumina NovaSeq 6000 (1)
6530 Quadrupole Time of Flight MS (Agilent Instrument) (1)
LTQ FT (1)
MaXis (1)
Bruker ImpactII ultra-high-resolution Qq-ToF (1)
Orbitrap Exploris 480 (1)
Bruker (1)
Flame ionisation detector MS - (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2013 (107)
2011 (59)
2012 (19)
2010 (12)
2015 (11)
2014 (10)
2023 (10)
2016 (7)
2008 (7)
2026 (5)
2022 (4)
2006 (3)
2025 (3)
2009 (2)
2021 (2)
2024 (2)
2018 (2)
2017 (1)
2019 (1)

CHEBI ID

CHEBI:16359 (3)
CHEBI:28865 (3)
CHEBI:35038 (3)
CHEBI:139138 (2)
CHEBI:143745 (2)
CHEBI:143757 (2)
CHEBI:173703 (2)
CHEBI:182784 (2)
CHEBI:195271 (2)
CHEBI:27432 (2)
CHEBI:27997 (2)
CHEBI:30769 (2)
CHEBI:32816 (2)
CHEBI:34494 (2)
CHEBI:34687 (2)
CHEBI:64563 (2)
CHEBI:73858 (2)
CHEBI:75342 (2)
CHEBI:80774 (2)
CHEBI:10136 (1)
CHEBI:116314 (1)
CHEBI:131342 (1)
CHEBI:1427 (1)
CHEBI:145227 (1)
CHEBI:15422 (1)
CHEBI:15603 (1)
CHEBI:15741 (1)
CHEBI:15781 (1)
CHEBI:15846 (1)
CHEBI:15978 (1)

Metabolite Name

Cholic acid (3)
Tris(2-butoxyethyl) phosphate (3)
(2S,3S,4S,5R,6R)-6-[[(3S,4S,6aR,6bS,8aR,9R,12aS,14bR)-9-hydroxy-4-(hydroxymethyl)-4,6a,6b,8a,11,11,14b-heptamethyl-1,2,3,4a,5,6,7,8,9,10,12,12a,14,14a-tetradecahydropicen-3-yl]oxy]-5-[(2S,3R,4S,5R,6R)-4,5-dihydroxy-6-(hydroxymethyl)-3-[(2S,3R,4R,5R,6S)-3,4,5-trihydroxy-6-methyloxan-2-yl]oxyoxan-2-yl]oxy-3,4-dihydroxyoxane-2-carboxylic acid (2)
1-({[2-(2-furylmethyl)-5-methylpyrrolidinyl]amino}methylene)-7-[8-({[2-(2-fury lmethyl)pyrrolidinyl]amino}methylene)-1,6-dihydroxy-3-methyl-5-(methylethyl)-7 -oxo(2-naphthyl)]-3,8-dihydroxy-6-methyl-4-(methylethyl)naphthalen-2-one (2)
1-Stearoyl-2-hydroxy-sn-glycero-3-phosphocholine (2)
2,6-Di-tert-butyl-4-hydroxymethylphenol (2)
9(10)-EpOME (2)
Alpha-linolenic acid|linolenic acid|(9Z,12Z,15Z)-octadeca-9,12,15-trienoic acid (2)
Dibutyl phthalate (DBP) (2)
Elaidic acid (2)
Lyso-PC(16:0) (2)
Monoolein (2)
NCGC00385123-01_C22H30O6_7b,9-Dihydroxy-3-(hydroxymethyl)-1,1,6,8-tetramethyl-5-oxo-1,1a,1b,4,4a,5,7a,7b,8,9-decahydro-9aH-cyclopropa[3,4]benzo[1,2-e]azulen-9a-yl acetate (2)
Pyruvate (2)
Succinate (2)
Taurocholic acid (2)
(R)-4-((3R,4R,5S,8S,9S,10R,13R,14S,17R)-3,4-dihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
(R)-4-((3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-3,7,12-trihydroxy-10,13-dimethylhexadecahydro-1H-cyclopenta[a]phenanthren-17-yl)pentanoic acid (1)
1,3,5-triprop-2-enyl-1,3,5-triazaperhydroine-2,4,6-trione (1)
1,4a-dimethyl-9-oxo-7-propan-2-yl-3,4,10,10a-tetrahydro-2H-phenanthrene-1-carboxylic acid (1)
1-(9Z-Octadecenoyl)-sn-glycero-3-phosphocholine (1)
1-Heptadecanoyl-sn-glycero-3-phosphocholine (1)
1-Hexadecanoyl-sn-glycerol (1)
1-Hexadecyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-2-stearoyl-sn-glycero-3-phosphocholine (1)
1-Myristoyl-sn-glycero-3-phosphocholine (1)
1-Palmitoyl-2-myristoyl-sn-glycero-3-phosphocholine (1)
13(S)-HODE methyl ester (1)
13-Keto-9Z,11E-octadecadienoic acid (1)
16-Hydroxyhexadecanoic acid (1)

Study type

ChIP-seq (178)
Transcription profiling by array (37)
RNA-seq of coding RNA (12)
RNA-seq of non coding RNA (3)
Unknown experiment type (1)
ChIP-chip by tiling array (1)
ChIP-chip by array (1)
Other (1)
Methylation profiling by array (1)

Release Date

2022 (368)
2021 (336)
2025 (301)
2023 (286)
2024 (266)
2020 (263)
2019 (173)
2013 (156)
2016 (155)
2018 (141)
2017 (124)
2015 (100)
2011 (90)
2014 (65)
2012 (62)
2010 (40)
2026 (39)
2009 (34)
2008 (28)
2006 (13)
2007 (10)
2005 (3)
2004 (2)
2003 (2)
2002 (1)
2001 (1)
1997 (1)

Lab affiliation

Moffitt Cancer Center Tampa, FL, USA (3)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, School of Molecular and Cellular Biology, University of Leeds, Leeds, LS2 9JT (1)
Biosciences and Bioengineering, IIT Bombay, India (1)
CSIR-CCMB (1)
Core Facility for Mass Spectrometry and Proteomics, Center for Molecular Biology of Heidelberg University (ZMBH) (1)
Department of Obstetrics and Gynecology PEDEGO Research Unit, Medical Research Center Oulu University Hospital, University of Oulu Kajaanintie 50, BOX 5000, 90014 Oulu, FINLAND (1)
Department of Otorhinolaryngology - Head and Neck Surgery, University of Helsinki and Helsinki University Hospital, Helsinki, Finland (1)
Department of Radiology Canary Center at Stanford for Cancer Early Detection Palo Alto, CA USA (1)
Molecular Genetics Laboratory, Infection and Immunology Division, Translational Health Science and Technology Institute, India (1)
National Institute of Immunology, New Delhi, India (1)
Professor, Bioengineering, Massachusetts Institute of Technology (1)
School of Chemistry & Biochemistry College of Sciences Georgia Institute of Technology (1)
Transplantation laboratory, Haartmaninkatu 3, PO Box 21, FI-00014 University of Helsinki, Finland. And HUSLAB, Helsinki University Hospital, Finland. (1)
University of Oxford, Discovery Proteomics Facility, Target Discovery Institute (1)

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Transcription profiling of S. cerevisiae response to the antifungal compound sampangine

Sampangine, a plant-derived alkaloid found in the Annonaceae family, exhibits strong inhibitory activity against the opportunistic fungal pathogens Candida albicans, Cryptococcus neoformans and Aspergillus fumigatus. In the present study, transcriptional profiling experiments coupled with the analy...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-11 | E-GEOD-10073 | biostudies-arrayexpress

Draft Genome Sequence of Mercury-Resistant Serratia sp. Strain SRS-8-S-2018.

Not available

S-EPMC7380528 | biostudies-literature

Gene expression response to the antifungal compound plakortide F acid in S. cerevisiae

Plakortide F acid (PFA), a marine-derived polyketide endoperoxide, exhibits strong inhibitory activity against the opportunistic fungal pathogens Candida albicans, Cryptococcus neoformans, and Aspergillus fumigatus. In the present study, transcriptional profiling coupled with mutant and biochemical...

ORGANISM(S): Saccharomyces cerevisiae S288c

2011-01-28 | E-GEOD-26925 | biostudies-arrayexpress

Gene expression response to the antifungal compound sampangine

ORGANISM(S): Candida albicans

2010-05-26 | E-GEOD-10104 | biostudies-arrayexpress

Glutathione S-transferases promote proinflammatory astrocyte-microglia communication during brain inflammation.

Not available

S-EPMC6637164 | biostudies-literature

Is Long-Term Heavy Metal Exposure Driving Carriage of Antibiotic Resistance in Environmental Opportunistic Pathogens: A Comprehensive Phenomic and Genomic Assessment Using Serratia sp. SRS-8-S-2018.

Not available

S-EPMC7468404 | biostudies-literature

Worldwide experience with a totally subcutaneous implantable defibrillator: early results from the EFFORTLESS S-ICD Registry.

Not available

S-EPMC4076663 | biostudies-literature

Gene expression response to the antifungal compound 6-Nonadecynoic acid (6-NDA) in Saccharomyces cerevisiae and Candida albicans

6-Nonadecynoic acid (6-NDA), a plant-derived acetylenic acid, exhibits strong inhibitory activity against the human fungal pathogens Candida albicans, Aspergillus fumigatus, and Trichophyton mentagrophytes. In the present study, transcriptional profiling coupled with mutant and biochemical analyses...

ORGANISM(S): Candida albicans

2012-02-08 | E-GEOD-35604 | biostudies-arrayexpress

Status of Catalase, Glutathione Peroxidase, Glutathione S-Transferase, and Myeloperoxidase Gene Polymorphisms in Beta-Thalassemia Major Patients to Assess Oxidative Injury and Its Association with Enzyme Activities.

Not available

S-EPMC9385263 | biostudies-literature

A comparison of letrozole regimens for ovulation induction in women with polycystic ovary syndrome

Not available

S-EPMC11228783 | biostudies-literature