Aggregated protein

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Unknown (1712)
Transcriptomics (591)
Proteomics (290)
Genomics (111)
Models (8)
Metabolomics (6)
Other (2)

Organisms

Homo sapiens (271)
Mus musculus (178)
Saccharomyces cerevisiae (18)
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Danio rerio (15)
Caenorhabditis elegans (13)
Bacillus subtilis subsp. subtilis str. 168 (8)
Streptomyces venezuelae (8)
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mouse gut metagenome (2)
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Organisms

Mus musculus (18)
Homo sapiens (17)
Caenorhabditis elegans (2)
Danio rerio (2)
Escherichia coli (1)
Rattus norvegicus (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (622)
pride (249)
ENA (52)
geo (32)
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PAXDB (1)

Tissue

Cell culture (51)
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Cerebrospinal fluid (2)

Disease

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Disease free (6)
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Inoculated with P. syringae pv. tomato strain DC3000 + avrRps4 (1)
Yersinia enterocolitica uninfected (1)
Burn injury (1)
Squamous Cell Carcinoma (1)
Scrapie infected (1)
Malignant melanoma (1)
Colorectal cancer (1)
Cerebral malaria (1)
Prostate carcinoma (1)
Invasive ductal carcinoma (1)
Acute T cell leukemia (1)

Technology Type

Mass Spectrometry (249)
Shotgun proteomics (122)
Bottom-up proteomics (62)
Data-dependent acquisition (35)
Data-independent acquisition (33)
Affinity purification coupled with mass spectrometry proteomics (18)
SWATH MS (11)
Top-down proteomics (9)
Gel-based experiment (7)
Chemical cross-linking coupled with mass spectrometry proteomics (5)
Mass spectrometry (4)
Mass spectrometry (4)
All-ion fragmentation (4)
DiaPASEF (3)
HDMSE (3)
SRM/MRM (3)
GCP (2)
P100 (2)
Mass spectrometry assay (2)
Metaproteomics (2)
Affinity proteomics (1)
Immunopeptidomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Illumina NovaSeq 6000 (32)
Illumina HiSeq 2500 (30)
Illumina HiSeq 4000 (30)
Illumina HiSeq 2000 (26)
NextSeq 500 (15)
Illumina Genome Analyzer IIx (14)
Illumina HiSeq 1500 (9)
Illumina MiSeq (7)
NextSeq 550 (6)
Illumina Genome Analyzer II (3)
NextSeq 2000 (3)
HiSeq X Ten (3)
PromethION (2)
MA900, Sony (2)
10x Chromium Controller (2)
Illumina HiSeq (2)
Nanodrop N1000 spectrophotometer (2)
Illumina HiSeq 3000 (2)
Thermal cycler, Agilent BioAnalyzer 2100 (1)
Microcentrifuge, vortex spinner, pipettes, -80C freezer (1)
Zeiss Stereomicroscope, standard lab plasticware (1)
MacBook Pro 64Gb RAM; 16-core (1)
Qubit 2.0 Fluorometer; Agilent TapeStation 4200 (1)
Agilent high resolution C scanner (1)
10X Chromium Controller (1)
10X Genomics Chromium (1)
Genepix (1)
Not applicable (1)
FUJIFILM BAS-5000 scanning hardware (1)
Sequel (1)

Publication Date

2025 (83)
2024 (68)
2015 (65)
2010 (64)
2023 (62)
2016 (62)
2014 (61)
2022 (57)
2012 (55)
2013 (52)
2021 (51)
2026 (41)
2011 (36)
2008 (35)
2020 (29)
2017 (28)
2018 (25)
2019 (23)
2009 (17)
2007 (13)
2006 (9)
2005 (8)
2004 (3)

UNIPROT ID/AC

P31749 (4)
Q03135 (3)
P45983 (3)
P08238 (2)
Q9Y5W3 (2)
Q15119 (2)
O14733 (2)
P62158 (2)
Q05397 (2)
P01112 (2)
P29353 (2)
P60484 (2)
O15530 (2)
Q13233 (2)
Q07889 (2)
P12931 (2)
P62993 (2)
P28562 (1)
Q00613 (1)
Q9UNE7 (1)
Q16539 (1)
9685.ENSFCAP00000000151 (1)
9685.ENSFCAP00000000248 (1)
9685.ENSFCAP00000000262 (1)
9685.ENSFCAP00000000263 (1)
9685.ENSFCAP00000000264 (1)
9685.ENSFCAP00000000265 (1)
9685.ENSFCAP00000000266 (1)
9685.ENSFCAP00000000268 (1)
9685.ENSFCAP00000000269 (1)

ENSEMBL ID

ENST00000297494 (1)

CHEBI ID

CHEBI:29108 (3)
CHEBI:57600 (2)
CHEBI:203600 (2)
CHEBI:16480 (2)
CHEBI:26523 (2)
CHEBI:18348 (2)
CHEBI:17552 (2)
CHEBI:15422 (2)
CHEBI:16761 (2)
CHEBI:60425 (1)
CHEBI:36080 (1)
CHEBI:16467 (1)
CHEBI:16027 (1)
CHEBI:35381 (1)
CHEBI:33916 (1)
CHEBI:35366 (1)
CHEBI:22958 (1)
CHEBI:37661 (1)
CHEBI:16292 (1)
CHEBI:16646 (1)
CHEBI:71176 (1)
CHEBI:36233 (1)
CHEBI:1230 (1)
CHEBI:134539 (1)
CHEBI:27082 (1)
CHEBI:28260 (1)
CHEBI:33942 (1)
CHEBI:17992 (1)
CHEBI:26984 (1)
CHEBI:33508 (1)

Metabolite Name

DMePE(44:11+4O) (1)
DMePE(40:8+8O) (1)
DMePE(18:2+3O/22:6) (1)
DMePE(40:8+3O) (1)
DMePE(40:6+4O) (1)
DMePE(22:6+O/17:1) (1)
DMePE(39:7+O) (1)
DMePE(17:0CHO/22:6) (1)
DMePE(39:3e) (1)
DMePE(16:0COOCH3/22:6) (1)
DMePE(38:6) (1)
DMePE(38:3e) (1)
DMePE(38:2e) (1)
DMePE(22:5+2O/15:0) (1)
DMePE(22:3/14:1) (1)
DMePE(36:3e) (1)
DMePE(36:2e) (1)
DMePE(16:0/20:2) (1)
DMePE(36:1+O) (1)
DMePE(35:3e) (1)
DMePE(35:2) (1)
DMePE(20:5+8O/14:1) (1)
DMePE(16:2e/18:1) (1)
DMePE(34:3) (1)
DMePE(34:2e) (1)
DMePE(34:2+OO) (1)
DMePE(30:2e) (1)
DMePE(18:1e) (1)
DMePE(18:0e) (1)
DMePE(16:1e) (1)

First Public Date

2026 (13)
2024 (6)
2025 (5)
2022 (5)
2014 (5)
2021 (4)
2023 (3)
2020 (3)
2017 (2)
2016 (2)
2015 (2)
2019 (1)
2018 (1)

Modelling Approach

Ordinary differential equation model (8)

Lab affiliation

IRCCS Istituto G Gaslini (7)
1VIB-UGent Center for Medical Biotechnology, VIB, 9052 Ghent, Belgium 2Department of Biomolecular Medicine, Ghent University, 9052 Ghent, Belgium (5)
University Clinic for Poultry and Fish Medicine, University of Veterinary Medicine, Vienna, Austria (5)
Seer, Inc. (4)
Clinical Division of Fish Medicine, University of Veterinary Medicine, Vienna, Austria (3)
Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology (3)
Molecular Genetics, RPTU Kaiserslautern (3)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, 1090 Vienna, Austria (2)
Department of Biomedical Sciences, University of Sassari, Italy (2)
Macquarie University (2)
Massachusetts Institute of Technology (2)
Molecular Genetics, RPTU Kaiserslautern, Germany (2)
OncoProteomics Laboratory, Dept of Medical Oncology, Amsterdam University Medical Centers, Amsterdam, The Netherlands (2)
Paul Scherrer Institute, Center for Radiopharmaceutica Sciences, 5232 Villigen PSI, Switzerland (2)
Protein Biogenesis Lab, The Francis Crick Institute, 1 Midland Road, London, NW1 1AT (2)
University of Greifswald, Institute of Microbiology, Department of Microbial Physiology and Molecular Biology (2)
#*Assistant Professor Department of Biotechnology Indian Institute of Technology Roorkee (1)
1 Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany 2 German Cancer Consortium (DKTK), Partner-site Munich and German Cancer Research Center (DKFZ), Heidelberg, Germany 3 Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
1 Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN 2 Center for Plant Biology, Purdue University, West Lafayette, IN 3 Department of Biological Sciences, Purdue University, West Lafayette, IN (1)
1Department of Botany and Plant Pathology, Purdue University, West Lafayette, IN, USA. 2Center for Plant Biology, Purdue University, West Lafayette, IN, USA. 3Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. (1)
1Gavin Herbert Eye Institute –Brunson Center for Translational Vision Research, Department of Ophthalmology and Visual Sciences, University of California Irvine, Irvine, CA 92697, USA 2Department of Physiology and Biophysics, University of California Irvine, Irvine, CA 92697, USA 3Department of Chemistry, University of California Irvine, Irvine, CA 92697, USA 4Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, CA 92697, USA (1)
AK Becker, Institut für Biochemie und Molekularbiologie (IBMB), Med. Fak. Universtität Bonn, Nussallee 11, 53115 Bonn, Germany (1)
Associate Professor of Neurology and Neuroscience (1)
Associate Professor, Mayor Lab, Department of Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, 2125 East Mall, Vancouver, BC V6T1Z4, Canada (1)
B Cube, TU Dresden, Germany (1)
Babraham Institute Cambridge CB22 3AT (1)
Baylor College of Medicine (1)
Beijing Chest Hospital (1)
Bertozzi Lab Department of Chemistry 380 Roth Way MC: 5080 Stanford CA 94305-4401 (1)
Bioanalytical Mass Spectrometry, Max Planck Institute for Molecular Biomedicine, Röntgenstr. 20, 48149 Münster, Germany (1)

IsPrivate

False (8)

Classification

bacteria (1)

Study type

Transcription profiling by array (261)
RNA-seq of coding RNA (143)
RNA-seq of coding RNA from single cells (38)
ChIP-seq (37)
RNA-seq of non coding RNA (20)
Unknown experiment type (12)
Other (11)
DNA-seq (11)
Methylation profiling by array (10)
Transcription profiling by tiling array (9)
Comparative genomic hybridization by array (8)
ChIP-chip by tiling array (6)
Proteomic profiling by array (6)
RNA-seq of total RNA (6)
High-throughput sequencing (5)
Methylation profiling by high throughput sequencing (5)
ChIP-chip by array (4)
Animal - High-throughput sequencing (3)
Cell line - High-throughput sequencing (3)
Genotyping by array (3)
MicroRNA profiling by array (3)
Human - High-throughput sequencing (2)
MicroRNA profiling by high throughput sequencing (2)
Single nucleus RNA sequencing (2)
Transcription profiling by SAGE (1)
Baseline (1)
One-color microarray (1)
Animal - Single-cell sequencing (1)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)

Release Date

2021 (206)
2022 (185)
2023 (179)
2024 (156)
2016 (136)
2018 (130)
2015 (127)
2025 (126)
2020 (126)
2019 (126)
2014 (124)
2017 (107)
2013 (101)
2012 (101)
2010 (98)
2011 (82)
2008 (58)
2009 (45)
2026 (28)
2007 (24)
2006 (20)
2005 (15)
2004 (11)
2003 (7)
2001 (5)
2002 (2)
1999 (2)
2000 (1)
1998 (1)
1997 (1)

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Aggregated protein of heat-treated GmDnj1 mutant Orbitrap LC-MSMS

Gmdnj1-knockout mutants had diminished growth in normal conditions, and when under heat stress, exhibited more severe browning, reduced chlorophyll contents, higher reactive oxygen species (ROS) contents, and higher induction of heat stress-responsive transcription factors and ROS-scavenging enzyme-...

ORGANISM(S): Glycine max

2021-09-09 | PXD019799 | Pride

Proctor2011_ProteinHomeostasis_NormalCondition

This model is from the article: Modelling the Role of the Hsp70/Hsp90 System in the Maintenance of Protein Homeostasis Proctor CJ, Lorimer IAJ PLoS ONE2011; 6(7): e22038. doi:10.1371/journal.pone.0022038, Abstract: Neurodegeneration is a...

2024-09-02 | BIOMD0000000344 | BioModels

Aggregated proteome of MDK model mice

MDK is a heparin-binding growth factor and found to be the Aβ associated protein. Through aggregated proteome, we aim to identify DE proteins more associated with plaques by MDK knockout.

ORGANISM(S): Mus musculus (Mouse)

2025-07-16 | PXD045746 | Pride

Mdk aggregated proteome mice

Aggregated gas molecules: toxic to protein?

Not available

S-EPMC3627187 | biostudies-literature

Conservation of mRNA and protein expression during development of C. elegans

Spatiotemporal control of gene expression is crucial for development and subject to evolutionary changes. Although proteins are the final product of most genes, the developmental proteome of an animal has not yet been comprehensively defined, and the correlation between RNA and protein abundance dur...

ORGANISM(S): Caenorhabditis elegans

2014-01-23 | E-GEOD-53359 | biostudies-arrayexpress

Folding nucleus structure persists in thermally-aggregated FGF-1.

Not available

S-EPMC5775177 | biostudies-literature

Auer2010 - Correlation between lag time and aggregation rate in protein aggregation

Auer2010 - Correlation between lag time and aggregation rate in protein aggregation This model is described in the article: Insight into the correlation between lag time and aggregation rate in the kinetics of protein aggregation. Auer S, Kashchiev D. Proteins 2010 Aug; 78(1...

2024-09-02 | BIOMD0000000555 | BioModels

Probing structurally altered and aggregated states of therapeutically relevant proteins using GroEL coupled to bio-layer interferometry.

Not available

S-EPMC4287005 | biostudies-literature

A fluorescent molecular imaging probe with selectivity for soluble tau aggregated protein.

Not available

S-EPMC8159431 | biostudies-literature

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data.

Not available

S-EPMC8570819 | biostudies-literature

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2721 Results

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