Ai Chen C - OmicsDI

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Unknown (1705)
Proteomics (42)
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Homo sapiens (37)
Mus musculus (21)
Arabidopsis thaliana (4)
Oryza sativa Indica Group (3)
Actinobacillus pleuropneumoniae (2)
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biostudies-arrayexpress (32)
pride (29)
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Mass Spectrometry (29)
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CHEBI ID

CHEBI:16750 (2)
CHEBI:16811 (2)
CHEBI:17596 (2)
CHEBI:18186 (2)
CHEBI:28044 (2)
CHEBI:30769 (2)
CHEBI:10136 (1)
CHEBI:102265 (1)
CHEBI:107667 (1)
CHEBI:107736 (1)
CHEBI:116278 (1)
CHEBI:116314 (1)
CHEBI:121071 (1)
CHEBI:124938 (1)
CHEBI:131342 (1)
CHEBI:131924 (1)
CHEBI:131988 (1)
CHEBI:131993 (1)
CHEBI:132034 (1)
CHEBI:132673 (1)
CHEBI:132676 (1)
CHEBI:132677 (1)
CHEBI:133199 (1)
CHEBI:133600 (1)
CHEBI:133662 (1)
CHEBI:133875 (1)
CHEBI:134058 (1)
CHEBI:134238 (1)
CHEBI:135056 (1)
CHEBI:135390 (1)

Metabolite Name

Adenosine (2)
Citric acid (2)
Guanosine (2)
L-Tyrosine (2)
Monoelaidin (2)
Sitosterol (2)
Stearic acid (2)
()-(alpha)-Kainic Acid (1)
()-syn-2-isobutyl-4-methylazetidine-2,4-dicarboxylic acid (1)
()-trans-8-tetrahydrocannabinol (1)
(+)-Cedrol (1)
(+)-Kurasoin B (1)
(+)-isomalbrancheamide B (1)
(+)-tersone E (1)
(+/-)-alpha-Bisabolol (1)
(+/-)12(13)-DiHOME (1)
(-)-(3S)-3-hydroxy-3-methyloxindole (1)
(-)-Ecgonine methyl ester (1)
(-)-Epinephrine (1)
(-)-O-Desmethyl Tramadol (1)
(-)-Quebrachitol (1)
(-)-patchoulol (1)
(-)-y-Ephedrine (1)
(1-{2-[({(2R,4S,5R)-5-[3-(2-Furyl)-1-methyl-1H-pyrazol-5-yl]-1-azabicyclo[2.2.2]oct-2-yl}methyl)amino]-2-oxoethyl}cyclopentyl)acetic acid (1)
(11xi)-4,7-Dihydroxy-12,13-epoxytrichothec-9-en-8-one (1)
(12Z)-9,10,11-trihydroxyoctadec-12-enoic acid (1)
(16R)-17-Hydroxykaura-18-oic acid (1)
(1R,2R,5S,9S,17S)-5-hydroxy-7,13-diazatetracyclo[7.7.1.02,7.013,17]heptadecan-6-one (1)
(1R,2S,3R,4R)-3-(Isobutylamino)-4-(3-pyridinyl)-1,2-cyclopentanediol (1)
(1R,3S,4S,5R)-3-{[(2E)-3-(3,4-Dihydroxyphenyl)-2-propenoyl]oxy}-1,4,5-trihydroxycyclohexanecarboxylic acid (1)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (7)
ChIP-seq (4)
MicroRNA profiling by array (2)
RNA-seq of non coding RNA (2)
Genotyping by array (1)
Methylation profiling by array (1)

Release Date

2025 (362)
2024 (249)
2023 (194)
2022 (190)
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2020 (121)
2016 (64)
2026 (58)
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2012 (35)
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2013 (24)
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2010 (12)
2009 (9)
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2005 (2)
2004 (2)
2002 (1)

Lab affiliation

National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences (3)
Hubei University of Medicine, Taihe Hospital (2)
School of Laboratory Medicine and Biotechnology, Southern Medical University (2)
University of Alabama at Birmingham, Department of Pathology, Division MCP, O'Neal Comprehensive Cancer Center (2)
1. College of Veterinary Medicine, Northwest Agriculture and Forestry University, Yangling 712100, Shaanxi, China; 2. Key Laboratory of Animal Biotechnology, Ministry of Agriculture, Northwest A&F University, Yangling 712100, Shaanxi, China (1)
Centre for Genomic Regulation (CRG), the Barcelona Institute of Science and Technology, Carrer Dr. Aiguader 88, Barcelona 08003, Spain. (1)
Centre for Heart Lung Innovation, University of British Columbia, Vancouver, BC, Canada Division of Respiratory Medicine, Department of Medicine, University of British Columbia, Vancouver, BC, Canada (1)
Centre for Virus Research, University of Glasgow (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Bavaria, Germany (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Department of Pathology, University of Michigan (1)
Department of Physiology, Pennsylvania Muscle Institute, Penn Cardiovascular Institute, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA 19104, USA. (1)
Food Safety Key Laboratory of Zhejiang Province, School of Food Science and Biotechnology, Zhejiang Gongshang University, Hangzhou, 310018, P.R. China (1)
Fudan University (1)
Helmholtz Munich (1)
Institute of Chemistry, Academia Sinica, Taipei, Taiwan (1)
Mayo Proteomics Core (1)
School of Medicine, School of Life Sciences, Westlake University, Hangzhou, Zhejiang, China. (1)
State Key Laboratory for Oncogenes and Related Genes, Key Laboratory of Gastroenterology and Hepatology, Ministry of Health, Division of Gastroenterology and Hepatology, Shanghai Institute of Digestive Disease, Renji Hospital, School of Medicine, Shanghai Jiao Tong University (1)
Taihe Hospital, Hubei University of Medicine, Shiyan 442000, Hubei, China (1)
University of Michigan, Ann Arbor, MI, US (1)
University of Michigan, Department of Pathology (1)
University of Wisconsin School of Medicine and Public Health (1)
Westlake University (1)

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Expression data of Actinobacillus pleuropneumoniae 4074 and the M-NM-^TluxS mutant of Actinobacillus pleuropneumoniae 4074

LuxS is an enzyme involved in the activated methyl cycle and the by-product autoinducer 2 (AI-2) was a quorum sensing signal in some species. In our previous study, the functional LuxS in AI-2 production was verified in the porcine respiratory pathogen Actinobacillus pleuropneumoniae. Enhanced biofi...

ORGANISM(S): Actinobacillus pleuropneumoniae

2011-11-09 | E-GEOD-19056 | biostudies-arrayexpress

Identifying vitamin C and RA-regulated genes in the J1 mESCs

It has been demonstrated that vitamin C enhances reprogramming efficiency during inducing pluripotent stem cells, however, the underlying mechanisms are not fully understood. To find the downstream target genes of vitamin C and investigate the mechanism of vitamin C on reprogramming promotion, we pe...

ORGANISM(S): Mus musculus

2014-01-21 | E-GEOD-43405 | biostudies-arrayexpress

Reference genomes for BALB/c Nude and NOD/SCID mouse models.

Not available

S-EPMC10542179 | biostudies-literature

Prospective Multi-Site Validation of AI to Detect Tuberculosis and Chest X-Ray Abnormalities.

Not available

S-EPMC11737584 | biostudies-literature

Expression data of Actinobacillus pleuropneumoniae 4074, the M-NM-^TluxS mutant and AI-2 supplemented M-NM-^TluxS mutant

LuxS is an enzyme involved in the activated methyl cycle. The by-product of this cycle, autoinducer 2 (AI-2), could be an important quorum sensing signal. LuxS was conserved and regulated many behaviors in different bacteria, but in most species, whether the regulations are related to AI-2 mediated ...

ORGANISM(S): Actinobacillus pleuropneumoniae

2011-11-15 | E-GEOD-21300 | biostudies-arrayexpress

LLM evaluation for thyroid nodule assessment: comparing ACR-TIRADS, C-TIRADS, and clinician-AI trust gap.

Not available

S-EPMC12515656 | biostudies-literature

iDIA-QC: AI-empowered Data-Independent Acquisition Mass Spectrometry-based Quality Control

Quality control (QC) in mass spectrometry (MS)-based proteomics is mainly based on data-dependent acquisition (DDA) analysis of standard samples. Here, we collected 2638 files acquired by data independent acquisition (DIA) and paired DDA files from mouse liver digests using 21 mass spectrometers acr...

ORGANISM(S): Mus musculus (Mouse)

2025-05-06 | PXD051878 | Pride

The Phases of Living Evidence Synthesis Using AI AI: Living Evidence Synthesis (Version 1).

Not available

S-EPMC12842881 | biostudies-literature

iDIA-QC: AI-empowered Data-Independent Acquisition Mass Spectrometry-based Quality Control

ORGANISM(S): Mus musculus (Mouse)

2025-05-07 | PXD055173 | Pride

Machine learning Dia Quality control Swath Mouse liver Diapasef

A multimodal generative AI copilot for human pathology.

Not available

S-EPMC11464372 | biostudies-literature

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