Alvarez L L - OmicsDI

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Unknown (4690)
Transcriptomics (128)
Proteomics (58)
Genomics (23)
Metabolomics (5)
Models (3)

Organisms

Homo sapiens (69)
Schizosaccharomyces pombe (53)
Sinorhizobium meliloti BL225C (53)
Mus musculus (26)
Arabidopsis thaliana (12)
Saccharomyces cerevisiae (6)
Mycobacterium tuberculosis (3)
Rattus norvegicus (3)
Dehalococcoides (2)
Vertebrata (1)
Dehalococcoides mccartyi 195 (1)
Dehalococcoides sp. ANAS2 (1)
environmental samples (1)
Helianthus annuus (1)
Streptomyces clavuligerus (1)
Dehalobacter restrictus (1)
Culex quinquefasciatus (1)
Bifidobacterium breve UCC2003 (1)
Chlorocebus aethiops (1)
Macaca mulatta (1)
Mycobacterium avium (1)
Bos taurus (1)
Enterococcus faecalis (1)
Acinetobacter baumannii (1)
Caenorhabditis elegans (1)
Canis lupus familiaris (1)
Pseudomonas aeruginosa (1)
Drosophila melanogaster (1)
Danio rerio (1)
Zea mays (1)

Organisms

Mus musculus (2)
viral metagenome (1)

Repository

biostudies-arrayexpress (134)
pride (53)
EGA (11)
MetaboLights (5)
ENA (5)
MassIVE (3)
BioModels (2)
Cell Collective (1)
EVA (1)
PanoramaPublic (1)
PAXDB (1)

Tissue

Brain (6)
Leaf (5)
Epithelial cell (5)
Lung (4)
Cell culture (4)
Kidney (3)
Early embryonic cell (2)
Heart (2)
Cell suspension culture (2)
Blood plasma (2)
Primary cell (2)
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Liver (2)
Monocyte (2)
Blood (2)
Hippocampus pyramidal layer (1)
Purkinje cell (1)
Hippocampal pyramidal neuron (1)
Pancreatic islet cell (1)
Sperm flagellum (1)
Seminal vesicle (1)
Pyramidal neuron (1)
B-lymphoblastoid cell line (1)
Schwann cell (1)
Astrocyte (1)
Prostate cancer cell line (1)
Sperm (1)
Malignant cell (1)
Thyroid gland (1)
Cerebellum (1)

Disease

COVID-19 (4)
Avian influenza (3)
Influenza (3)
Cholangiocarcinoma (2)
Disease free (2)
Alzheimer's disease (1)
Normal (1)
Thyroid gland anaplastic carcinoma (1)
Proteasome-associated autoinflammatory syndrome 1 (1)
Proteasome-associated autoinflammatory syndrome 3 (1)
Mucolipidosis II alpha/beta (1)
Prion disease (1)
Coronavirus infectious disease (1)
Pancreas adenocarcinoma (1)
Prostate adenocarcinoma (1)
Chagas disease (1)
Lymphoma (1)
Colon cancer (1)

Technology Type

Mass Spectrometry (53)
Shotgun proteomics (27)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (8)
SWATH MS (6)
Mass spectrometry (5)
Top-down proteomics (5)
Gel-based experiment (4)
Data-independent acquisition (2)
SRM/MRM (2)
Infinium Omni2.5M (1)
AB 5500xl Genetic Analyzer (1)
NMR spectroscopy (1)
Metaproteomics (1)
Affinity proteomics (1)
All-ion fragmentation (1)

Instrument Platform

BGISEQ-500 (2)
NanoDrop (1)
Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 2000 (1)
- (1)
MS:1000031 (1)
MaXis II (1)
6520A Quadrupole Time-of-Flight LC/MS (1)
LTQ (1)
LTQ Orbitrap (1)
Liquid Chromatography MS - alternating (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Gas Chromatography MS - positive (1)
Nuclear Magnetic Resonance (NMR) - (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2010 (22)
2015 (17)
2014 (17)
2022 (16)
2013 (15)
2011 (15)
2016 (12)
2008 (12)
2024 (11)
2012 (11)
2025 (10)
2009 (9)
2023 (9)
2021 (6)
2019 (4)
2020 (4)
2026 (3)
2005 (2)
2018 (2)
2017 (2)
2007 (1)

UNIPROT ID/AC

Q7KYZ4 (1)
Q7VYR5_BORPE (1)
Q7VW57_BORPE (1)
Q7VTR7_BORPE (1)
Q7VY25_BORPE (1)
FUMC_BORPE (1)
Q7VTC2_BORPE (1)
TRPB_BORPE (1)
Q7VVY8_BORPE (1)
Q7VY76_BORPE (1)
Q7VZB9_BORPE (1)
Q7VUS8_BORPE (1)
Q7VSG5_BORPE (1)
Q7VSQ8_BORPE (1)
Q7VY26_BORPE (1)
Q7VWA1_BORPE (1)
SYE_BORPE (1)
LOLB_BORPE (1)
Q7VX14_BORPE (1)
Q7VZ87_BORPE (1)
Q7VYC1_BORPE (1)
Q7VWA2_BORPE (1)
Q7VS81_BORPE (1)
ATPB_BORPE (1)
Q7VYR3_BORPE (1)
Q7VWP7_BORPE (1)
RL20_BORPE (1)
NADK_BORPE (1)
PLSX_BORPE (1)
Q7VW07_BORPE (1)

CHEBI ID

CHEBI:88684 (2)
CHEBI:74450 (2)
CHEBI:74535 (2)
CHEBI:28790 (2)
CHEBI:27897 (2)
CHEBI:64563 (2)
CHEBI:35195 (1)
CHEBI:190293 (1)
CHEBI:63709 (1)
CHEBI:190292 (1)
CHEBI:49274 (1)
CHEBI:88916 (1)
CHEBI:89100 (1)
CHEBI:176770 (1)
CHEBI:138576 (1)
CHEBI:176768 (1)
CHEBI:59201 (1)
CHEBI:176765 (1)
CHEBI:176764 (1)
CHEBI:176763 (1)
CHEBI:176762 (1)
CHEBI:77241 (1)
CHEBI:176761 (1)
CHEBI:176756 (1)
CHEBI:176755 (1)
CHEBI:5658 (1)
CHEBI:176754 (1)
CHEBI:176753 (1)
CHEBI:137192 (1)
CHEBI:176752 (1)

Metabolite Name

4-Allyl-1,2-diacetoxybenzene (1)
Chavibetol acetate (1)
Chavibetol (1)
Chavicol acetate (1)
Methyl chavicol (1)
Terpinen-4-ol (1)
SM(d14:1/27:0) (1)
(20Z)-17-Oxo-20-hexacosenoic acid (1)
SM(d14:3/30:0) (1)
SM(d14:2/30:0) (1)
Cer-NS(d18:1/24:1) (1)
PE(18:2e/18:1) (1)
L-(+)-glutamine (1)
Cer-NP(t18:0/22:0) (1)
PC(18:0/24:4) (1)
PC(18:2e/20:5) (1)
HexCer-NS(d18:2/24:0) (1)
PEtOH(27:0-18:1) (1)
Tasosartan (1)
PC(18:1e/20:5) (1)
PE(21:0/18:2) (1)
PEtOH(26:1-20:4) (1)
SM(d14:2/20:0) (1)
2-hydroxycerotic acid (1)
PC(18:1e/20:3) (1)
PC(18:1e/18:1) (1)
HexCer-NS(d18:1/20:0) (1)
OxPC(16:0-18:0+1O(1Cyc)) (1)
Cer-NS(d17:1/24:1) (1)
OxPE(18:1-18:0+1O) (1)

First Public Date

2025 (2)
2023 (1)
2019 (1)
2015 (1)

Modelling Approach

Logical model (1)
Ordinary differential equation model (1)

Lab affiliation

Professor, Department of Cellular and Molecular Pharmacology (2)
University of Nebraska - Lincoln (2)
Instituto de Investigaciones Sanitarias de Santiago de Compostela (2)
University of Wisconsin-Madison (2)
Foundation of Ophthalmology Investigation (1)
Donald Danforth Plant Science Center, St. Louis, MO, 63132, USA. (1)
Dept. Cellular Molecular Pharmacology, University of San Francisco (UCSF), USA (1)
Assistant Professor Department of Neurology (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) (1)
Hepatology Program, CIMA, University of Navarra. Avda. Pio XII, n55. 31008 Pamplona, Spain. (1)
Professor of Biochemistry Proteomics Unit Centro Nacional de Biotecnología (CSIC) Darwin 3, 28049, Madrid (1)
Quantitative Biosciences Institute (QBI), J. David Gladstone Institutes, Department of Cellular and Molecular Pharmacology, University of California, San Francisco (1)
Proteomics and Metabolomics Facility, University of Nebraska-Lincoln (1)
Plant Biochemistry Ruhr University Bochum (1)
Smilow Center for Translational Research 12-124 3400 Civic Center Blvd Philadelphia, PA 19104 P: 215-573-5413 F: 215-898-5408 (1)
Cambridge institute of Science, Altos Labs, Cambridge, UK (1)
Department of Microbiology, Immunology, and Molecular Genetics, University of California, Los Angeles, CA, USA (1)
Fernando García Martínez, Ph.D. Proteomics Unit, Spanish National cancer Research Center, CNIO, MADRID, SPAIN (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Oklahoma University (1)
Molecular Cell and Developmental Biology, School of Life Sciences, University of Dundee (1)
6Quantitative Biosciences Institute (QBI), University of California San Francisco, San Francisco, CA, USA (1)
Department of Medicine and Animal Surgery, Faculty of Veterinary Science, University of Murcia, Spain (1)
University Medicine Greifswald, Interfaculty Institute of Genetics and Functional Genomics, Department of Functional Genomics (1)
MPI of Biophysics and MPI for Brain Research (1)
University of Copenhagen, Novo Nordisk Foundation Center for Basic Metabolic Research, Denmark (1)
1) CNRS - ITAV USR3505, 31106 Toulouse, France 2) Nova Medical School, CEDOC- Chronic Diseases, 1150-082, Lisboa, Portugal (1)
Dept. Cellular Molecular Pharmacology, University of California - San Francisco (UCSF), USA (1)
1Cancer Research Program, Hospital del Mar Research Institute, Doctor Aiguader 88, Barcelona 08003, Spain. Centro de Investigación Biomédica en Red Cáncer (CIBERONC), Madrid, Spain. (1)
Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kgs. Lyngby, Denmark (1)

IsPrivate

False (2)

Modification

2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)

Study type

Transcription profiling by array (84)
Comparative genomic hybridization by array (10)
Unknown experiment type (9)
RNA-seq of coding RNA (9)
ChIP-seq (6)
Methylation profiling by array (5)
Other (4)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)

Release Date

2023 (627)
2022 (598)
2025 (568)
2021 (541)
2024 (534)
2020 (364)
2019 (240)
2018 (201)
2016 (177)
2015 (169)
2017 (165)
2014 (127)
2013 (94)
2026 (93)
2011 (77)
2012 (74)
2010 (60)
2009 (44)
2008 (35)
2006 (11)
2007 (8)
2005 (6)
2004 (4)
2000 (3)
2002 (2)
2003 (1)
2001 (1)

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Continuous Optical Zoom Compound Eye Imaging Using Alvarez Lenses Actuated by Dielectric Elastomers.

Not available

S-EPMC11202164 | biostudies-literature

Elevating Circulating L-Kynurenine Promotes Frailty in Aging Mice.

Not available

S-EPMC12862278 | biostudies-literature

Metabolomics-Driven Discovery of an Introduced Species and Two Malaysian Piper betle L. Variants

The differences in pungency of 'sirih' imply the probable occurrence of several variants of Piper betle L. in Malaysia. However, the metabolite profiles underlying the pungency of the different variants remain a subject of further research. The differences in metabolite profiles of selected M...

2022-03-21 | MTBLS2585 | MetaboLights

Efficient direct shoot organogenesis and genetic stability in micropropagated sacha inchi (Plukenetia volubilis L.).

Not available

S-EPMC7650214 | biostudies-literature

UNRAVELING THE MECHANISMS OF EFFICIENT PHOSPHORUS UTILIZATION IN POPCORN (Zea mays L. var. Everta): INSIGHTS FROM PROTEOMICS AND METABOLITES ANALYSIS

The expansion of agriculture and the need for sustainable practices drive breeders to develop plant cultivars adapted to abiotic stress, including nutrient deficiency. Phosphorus (P) is crucial for photosynthesis and plant growth, but its availability in the soil is often limited, hampering crop dev...

ORGANISM(S): Zea mays (Maize)

2025-01-23 | PXD044106 | Pride

Efficacy of Eribulin Plus Gemcitabine Combination in L-Sarcomas.

Not available

S-EPMC9820645 | biostudies-literature

An O-acetylserine(thiol)lyase homolog regulates cysteine homeostasis in Arabidopsis thaliana

Cysteine occupies a central position in plant metabolism due to its biochemical functions. Arabidopsis thaliana cells contain different O-acetylserine(thiol)lyase (OASTL) enzymes that catalyze the biosynthesis of cysteine. Because they are localized in the cytosol, plastids and mitochondria, this re...

ORGANISM(S): Arabidopsis thaliana

2011-11-23 | E-GEOD-19244 | biostudies-arrayexpress

Ecogeography and utility to plant breeding of the crop wild relatives of sunflower (Helianthus annuus L.).

Not available

S-EPMC4597133 | biostudies-literature

Morphological Differentiation, Yield, and Cutting Time of Lolium multiflorum L. under Acid Soil Conditions in Highlands.

Not available

S-EPMC11359289 | biostudies-literature

Hingant2014 - Micellar On-Pathway Intermediate in Prion Amyloid Formation

Hingant2014 - Micellar On-Pathway Intermediate in Prion Amyloid Formation Hingant2014 - Micellar On-Pathway Intermediate in Prion Amyloid Formation Encoded non-curated model. Issues: - Missing kinetic parameters This model is described in the article: A micel...

2015-04-15 | MODEL1409230001 | BioModels

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4907 Results

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