Amd - OmicsDI

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Unknown (3758)
Genomics (442)
Transcriptomics (367)
Proteomics (60)
Genomic (11)
Metabolomics (9)
Other (7)
Methylation profiling (5)
Clinical (2)

Organisms

Homo sapiens (167)
Mus musculus (111)
Populus x canadensis (8)
Rattus norvegicus (6)
Macaca mulatta (5)
Triticum aestivum (4)
Plasmodium falciparum Dd2 (3)
Thalassiosira pseudonana CCMP1335 (3)
Candidatus Pelagibacter ubique HTCC1062 (3)
Photobacterium profundum (3)
Brassica napus (3)
Plasmodium falciparum (3)
Pseudomonas protegens (2)
Pseudomonas aeruginosa PAO1 (2)
Saccharomyces cerevisiae (2)
Sus scrofa (2)
Drosophila melanogaster (2)
unidentified microorganism (2)
Heterocapsa sp. (1)
Pseudo-nitzschia multiseries (1)
Acinetobacter baumannii 34654 (1)
Fusarium verticillioides (1)
Acinetobacter baumannii 1207552 (1)
Acinetobacter baumannii 1428368 (1)
uncultured marine microorganism (1)
Pseudomonas syringae pv. syringae B728a (1)
Ampelisca abdita (1)
Laccaria bicolor (1)
Heterobasidion irregulare (1)
Petunia x hybrida (1)

Organisms

Homo sapiens (116)
Mus musculus (82)
mine drainage metagenome (36)
Macaca mulatta (3)
Rattus norvegicus (3)
unidentified (3)
soil metagenome (3)
Gardnerella vaginalis AMD (2)
Acidithiobacillus ferrooxidans (2)
Nothobranchius furzeri (2)
Chlorocebus sabaeus (2)
biofilm metagenome (2)
lake water metagenome (2)
Candidatus Gallionella acididurans (1)
Thiomonas sp. CB2 (1)
Acidiella bohemica (1)
Paenibacillus dokdonensis (1)
Acidithiobacillus sp. 'AMD consortium' (1)
Acidiferrobacter thiooxydans (1)
Paenibacillus paridis (1)
rock porewater metagenome (1)
Shigella flexneri 4c (1)
Hydrotalea sp. AMD (1)
Candidatus Microsaccharimonas sossegonensis (1)
Candidatus Chaera renei (1)
Kosakonia oryzae (1)
Thiomonas sp. Kv 2-4 (1)
Shigella flexneri 1a (1)
Leptospirillum ferriphilum (1)
Shigella flexneri 2a (1)

Repository

ENA (425)
biostudies-arrayexpress (200)
geo (191)
pride (48)
dbGaP (11)
MassIVE (6)
MetaboLights (6)
iProX (4)
EGA (2)
GNPS (2)
NODE (2)
PanoramaPublic (2)
GPMDB (1)
MetabolomicsWorkbench (1)

Tissue

Cell culture (11)
Epithelial cell (4)
Retina (4)
Retinal pigment epithelial cell (4)
Vitreous humor (3)
Blood plasma (2)
Eye (2)
Heart (2)
Blood (1)
Abdominal adipose tissue (1)
Blood cell (1)
Cell suspension culture (1)
Choroid (1)
Choroidal cell of the eye (1)
Embryonic stem cell (1)
Feces (1)
Malignant cell (1)
Monocyte (1)
Pericyte cell (1)
Permanent cell line cell (1)
Pluripotent stem cell (1)
Primary cell (1)
R1 photoreceptor cell (1)
Retinal pigment epithelium cell (1)
Stem cell (1)
Urine (1)

Disease

Age related macular degeneration (12)
Multibacillary (1)
Diminished Ovarian Reserve (DOR) (1)
Normal (1)
Parkinson Disease (1)
Pain, Postoperative (1)
Not Available (1)
Eye disease (1)
Age related macular degeneration 1 (1)
Brain cancer (1)
Breast cancer (1)
Colon cancer (1)
Degeneration of macula and posterior pole (1)
Diabetic retinopathy (1)
Disease free (1)
Epiretinal membrane (1)
Macular degeneration (1)
Proliferative diabetic retinopathy (1)

Technology Type

Mass Spectrometry (48)
Shotgun proteomics (24)
Bottom-up proteomics (12)
Data-dependent acquisition (6)
Mass spectrometry assay (4)
SWATH MS (4)
Data-independent acquisition (3)
Gel-based experiment (3)
Mass spectrometry (2)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR (1)
HDMSE (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (5)
BGISEQ-500 (4)
Illumina HiSeq 4000 (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Illumina HiSeq 2500 (3)
LTQ Orbitrap Elite (3)
Liquid Chromatography MS - positive - reverse-phase (3)
IScan (2)
Linux computer (2)
Linux Beowulf cluster; AMD Opteron Linux Beowulf cluster; AMD Opteron 6168 (2)
Illumina HiSeq 2000 (2)
NextSeq 500 (2)
Orbitrap Exploris 480 (2)
Fluidigm C1 (1)
Illumina MiSeq (1)
Q Exactive (1)
Instrument (1)
OrbiTrap Exactive Q HF (1)
Orbitrap Fusion Lumos (1)
Q Exactive HF (1)
TripleTOF 5600 (AB Sciex) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
QToF (1)

Publication Date

2022 (44)
2010 (34)
2026 (32)
2024 (32)
2025 (30)
2015 (28)
2014 (28)
2012 (27)
2021 (26)
2023 (25)
2013 (24)
2011 (24)
2020 (21)
2016 (17)
2017 (16)
2018 (15)
2019 (11)
2009 (9)
2007 (4)
2006 (4)
2008 (3)
2005 (1)

CHEBI ID

CHEBI:49402 (2)
CHEBI:72865 (2)
CHEBI:9150 (2)
CHEBI:7466 (2)
CHEBI:16562 (2)
CHEBI:28125 (2)
CHEBI:77086 (2)
CHEBI:18292 (2)
CHEBI:74340 (2)
CHEBI:84487 (2)
CHEBI:16436 (2)
CHEBI:18186 (2)
CHEBI:73850 (2)
CHEBI:64489 (2)
CHEBI:73858 (2)
CHEBI:16750 (2)
CHEBI:16551 (2)
CHEBI:34698 (2)
CHEBI:74475 (2)
CHEBI:116314 (2)
CHEBI:73067 (2)
CHEBI:17509 (2)
CHEBI:16467 (2)
CHEBI:17747 (2)
CHEBI:15843 (2)
CHEBI:28364 (2)
CHEBI:16411 (2)
CHEBI:17597 (2)
CHEBI:17964 (2)
CHEBI:16737 (2)

Metabolite Name

2-Methylindole (2)
Ceftriaxone (2)
7,8-Dihydroxy-4-methylcoumarin (2)
Isoetharine (2)
2-Linoleoyl-1-palmitoyl-sn-glycero-3-phosphoethanolamine (2)
2-Aminoisobutyric acid (2)
Isatin (2)
Undecanoic acid (2)
Thymine (2)
Pyroglutamic acid (2)
Indoxyl sulfate (2)
D-Glutamine (2)
Benzoic acid (2)
4-Hydroxybenzaldehyde (2)
Deoxycholic acid (2)
Citric acid (2)
Pinolenic acid (2)
5-Hydroxytryptophan (2)
Adenine (2)
16-Hydroxypalmitic acid (2)
Indole-3-carboxaldehyde (2)
Thymidine (2)
L-Tyrosine (2)
L-Phenylalanine (2)
2-Carboxy-arabinitol (1)
1-(4-Hydroxy-3-methoxyphenyl)-7-phenyl-1-hepten-3-one (1)
10-Hydroperoxy-12-[6-[pent-2-en-1-yl]-2,3-dioxabicyclo[2.2.1]heptan-5-yl]dodeca-4,7,11-trienoylcarnitine (1)
Methacrylamide (1)
Lexipafant (1)
4-methyl-proline (1)

First Public Date

2025 (49)
2022 (49)
2024 (45)
2026 (43)
2021 (34)
2023 (32)
2017 (29)
2019 (28)
2020 (27)
2014 (23)
2013 (21)
2015 (19)
2018 (15)
2016 (11)

Classification

bacteria (9)
protozoa (1)

Modification

Not available (1)

Study status

Terminated (1)
Withdrawn (1)

Study type

Transcription profiling by array (121)
RNA-seq of coding RNA (28)
Comparative genomic hybridization by array (12)
Unknown experiment type (7)
RNA-seq of coding RNA from single cells (7)
Methylation profiling by array (6)
RNA-seq of non coding RNA (4)
Other (3)
MicroRNA profiling by array (3)
Cell line - High-throughput sequencing (2)
RNA-seq of total RNA (2)
Interventional (2)
Cell line - Methylation microarray (1)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
ChIP-chip by array (1)
DNA-seq (1)

Release Date

2022 (432)
2025 (397)
2023 (385)
2021 (365)
2024 (315)
2020 (294)
2019 (236)
2017 (204)
2016 (194)
2018 (189)
2015 (185)
2014 (183)
2013 (121)
2012 (108)
2011 (89)
2010 (75)
2026 (51)
2009 (45)
2008 (29)
2007 (26)
2006 (15)
2005 (6)
2004 (4)
2003 (4)
2002 (3)
2000 (2)
1997 (1)

Lab affiliation

Ottawa Institute of Systems Biology and Department of Biochemistry, Microbiology and Immunology, Faculty of Medicine, University of Ottawa, 451 Smyth Road, Ottawa, Ontario K1H 8M5, Canada (3)
1. Gavin Herbert Eye Institute - Center for Translational Vision Research, Department of Ophthalmology, University of California Irvine, CA, 92697, USA 2. Department of Physiology and Biophysics, School of Medicine, University of California Irvine, CA (1)
1Center for Advanced Vision Science, University of Virginia School of Medicine, Charlottesville, Virginia, USA (1)
1Department of Ophthalmology, Stem Cell Ocular Regenerative Medicine Center, Wilmer Eye Institute, The Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA. (1)
5Department of Plant Science and Technology, Chung-Ang University, Anseong 17546, Republic of Korea (1)
Adele Niessen Professor of Ophthalmology Vice Chair for Research FM Kirby Center for Molecular Ophthalmology Scheie Eye Institute University of Pennsylvania (1)
Barbara M. Braunger, Institute of Neuroanatomy, University Clinic Hamburg-Eppendorf, Hamburg, Germany (1)
Biosciences Division (1)
Cell & Developmental Biology, College of Life Sciences, University of Dundee, UK (1)
Centre for Cancer Cell and Molecular Biology, Barts Cancer Institute, Queen Mary University of London, Charterhouse square, London EC1M 6BQ, The United Kingdom. (1)
Centro Científico y Tecnológico de Excelencia Ciencia & Vida, Fundación Ciencia & Vida, Santiago, Chile. Instituto Milenio de Oceanografía (IMO), Universidad de Concepción, Concepción, Chile. (1)
Dame Kate Campbell Fellow Department of Surgery| Melbourne Medical School Department of Anatomy and Physiology| School of Biomedical Sciences Faculty of Medicine, Dentistry and Health Sciences Medical Building (#181), Grattan Street The University of Melbourne, Victoria 3010 Australia P: +61 3 9035 5464 E: apebay@unimelb.edu.au W: https://medicine.unimelb.edu.au/school-structure/surgery W: https://biomedicalsciences.unimelb.edu.au/departments/anatomy-and-physiology (1)
Department of Biomedical Sciences, University of Padova, Italy (1)
Department of Chemistry, University of Kansas, Lawrence, KS, United States (1)
Department of Human Molecular Genetics and Biochemistry, Sackler Faculty of Medicine and Sagol School of Neurosciences, Tel Aviv University, Tel Aviv 69978, Israel (1)
Department of Infectious Diseases, Immunology and Sexual Health and Department of Medicine, St George Hospital, University of New South Wales, 2 South Street, Kogarah, Sydney, NSW 2217, Australia (1)
Department of Medical Biotechnology; Faculty of Biochemistry, Biophysics and Biotechnology, Jagiellonian University, Kraków, Poland (1)
Department of Medicine, section of Physiology and Biochemistry, University of Perugia (1)
Department of Ophthalmology, University of California, Irvine, CA 92697 (1)
Department of Pharmaceutical Sciences, School of Pharmacy and Pharmaceutical Sciences, University at Buffalo (1)
Dept of pathology, Vision research foundation, Chennai, India (1)
Dept. Immunology, Microbiology and Parasitology Faculty of Science and Technology University of the Basque Country (UPV/EHU) Leioa, Spain (1)
Duke University, Albert Eye Research Institute (1)
Faculty of Medicine (1)
Functional Proteomics Laboratory, Centro Nacional de Biotecnología, CSIC, Calle Darwin 3, Campus de Cantoblanco, 28049 Madrid, Spain. (1)
Hopp Children's Cancer Center Heidelberg (KiTZ), Heidelberg, Germany German Cancer Research Center (DKFZ), Clinical Cooperation Unit Pediatric Oncology , Heidelberg, Germany (1)
Institute for Ophthalmic Research Eberhard-Karls University of Tuebingen Elfriede-Aulhorn-Str. 7 D-72076 Tuebingen. Germany. (1)
Johns Hopkins University (1)
Lab for Retinal Cell Biology Dept. Ophthalmology USZ / UZH University of Zurich (1)
Lab for Retinal Cell Biology, Department of Ophthalmology, University of Zürich, Wagistrasse 14, Schlieren, CH 8952, Switzerland (1)

Location

South Korea (1)
France (1)

Keyword

Informal caregivers (1)
Cost effectiveness (1)
Cohort study (1)
Randomized study (1)
Ketamine (1)
Lidocaine (1)
Elderly (1)

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Expression data for human retinal pigment epithelium (RPE)/choroid - early age-related macular degeneration (AMD) and control samples

Purpose: Age-related degeneration (AMD) is a major cause of blindness in developed countries. The molecular pathogenesis of early events in AMD is poorly understood. We investigated differential gene expression in samples of human retinal pigment epithelium (RPE)/choroid from early AMD and control m...

ORGANISM(S): Homo sapiens

2013-12-23 | E-GEOD-50195 | biostudies-arrayexpress

Human Plasma Metabolomics in Age-related Macular Degeneration (AMD) Using Nuclear Magnetic Resonance Spectroscopy

Not available

ORGANISM(S): Homo sapiens

ST000590 | MetabolomicsWorkbench

Hydrotalea sp. AMD isolate:AMD

Hydrotalea sp. AMD isolate:AMD Genome sequencing and assembly

PRJNA513256 | ENA

Gardnerella vaginalis AMD

Gardnerella vaginalis strain AMD Whole genome sequencing project

PRJNA40893 | ENA

AMD

AMD Raw sequence reads

PRJNA1097011 | ENA

Retinal pigment epithelium extracellular vesicles are potent inducers of age-related macular degeneration disease phenotype in the outer retina

Age-related macular degeneration (AMD) is a leading cause of blindness. Vision loss is caused by the loss of the retinal pigment epithelium (RPE) and photoreceptors and/or retinal and choroidal angiogenesis. Here we use AMD patient specific RPE cells with the Y402H high-risk polymorphism in the comp...

ORGANISM(S): Homo Sapiens (ncbitaxon:9606)

2022-01-21 | MSV000088713 | MassIVE

Factor H and related proteins in AMD

Age-related macular degeneration (AMD) is a common form of adult blindness. Risk of developing AMD is strongly linked to genetics, in particular at the Regulators of Complement Activation (RCA) locus on Chr1, which contains 6 genes, Complement Factor H (CFH) and Complement Factor H-related 1-5 (CFHR...

ORGANISM(S): Homo Sapiens

2022-01-18 | PXD023466 | panorama

Proteomics based identification and validation of biomarkers for AMD

Age related macular degeneration (AMD) is one of the leading causes of irreversible central vision loss in the elderly population. According to the WHO estimates, AMD globally ranks third in causing vision impairment with a blindness prevalence of 8.7%.There is no cure for AMD; however,if it is diag...

ORGANISM(S): Homo sapiens (Human)

2022-03-02 | PXD007531 | Pride

Acidithiobacillus sp. 'AMD consortium'

Acidithiobacillus sp. 'AMD consortium' Genome sequencing

PRJNA573091 | ENA

Age-related Macular Degeneration (AMD) is a leading cause of incurable blindness in people over the age of 65. AMD is a late-onset multi-factorial neurodegenerative disease and its pathogenesis involves interaction of genetic and environmental factors. Several chromosomal regions have been as...

phs000182.v2.p1 | EGA

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