Amylase - OmicsDI

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Unknown (3636)
Genomics (205)
Transcriptomics (162)
Proteomics (76)
Other (7)
Metabolomics (5)
Clinical (3)
Models (1)
Multiomics (1)

Organisms

Homo sapiens (53)
Mus musculus (17)
Saccharomyces cerevisiae (16)
Arabidopsis thaliana (15)
Bacillus subtilis (6)
Drosophila melanogaster (4)
Streptococcus pneumoniae D39 (4)
Bacillus subtilis subsp. subtilis str. 168 (4)
Schizosaccharomyces pombe (4)
Triticum aestivum (4)
Streptomyces lividans (3)
Aspergillus oryzae (3)
Streptococcus mutans UA159 (2)
Enterococcus faecium (2)
Coccidioides immitis RS (2)
Streptococcus gordonii str. Challis (2)
Hypomesus transpacificus (2)
Roseburia inulinivorans DSM 16841 (2)
Spodoptera frugiperda (2)
Neurospora crassa (2)
Oryza sativa Japonica Group (2)
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Arabidopsis (1)
uncultured bacterium (1)
Malbranchea cinnamomea (1)
Lepeophtheirus salmonis (1)
Equus caballus (1)
Trypanosoma brucei (1)
Saccharomyces cerevisiae S288C (1)
Aedes aegypti (1)

Organisms

Bacillus subtilis (8)
Mus musculus (8)
Bacillus velezensis (5)
Saccharomyces cerevisiae (5)
Homo sapiens (5)
Bacillus amyloliquefaciens (4)
Bacillus cereus (4)
Aspergillus luchuensis (3)
Triticum aestivum (3)
Aspergillus oryzae (3)
Oryza sativa (3)
Bacillus subtilis subsp. subtilis str. 168 (3)
Arabidopsis thaliana (3)
Lipomyces starkeyi NRRL Y-11557 (2)
Bacillus siamensis (2)
Penicillium oxalicum (2)
plant metagenome (2)
mouse gut metagenome (2)
Glaciecola amylolytica (1)
Citrobacter sp. HSTU-bmb20 (1)
Roseburia inulinivorans DSM 16841 (1)
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 (1)
Trichoderma sp. MLT1J1 (1)
Tenacibaculum litoreum (1)
Streptococcus gordonii str. Challis (1)
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 (1)
Coccidioides immitis RS (1)
Brevibacillus borstelensis cifa_chp40 (1)
Aspergillus affinis (1)
Thermomonospora curvata (1)

Repository

ENA (202)
biostudies-arrayexpress (106)
geo (65)
pride (58)
MassIVE (9)
iProX (7)
MetaboLights (5)
jPOST (2)
BioModels (1)
EGA (1)

Tissue

Endosperm (5)
Plant cell (4)
Saliva (4)
Liver (3)
Seed (3)
Leaf (2)
Venom (2)
Amniotic fluid (1)
Bladder urothelial cell (1)
Blood plasma (1)
Brain (1)
Cell culture (1)
Cell suspension culture (1)
Cotyledon (1)
Dental plaque (1)
Egg (1)
Embryo (1)
Epithelium of midgut (1)
Fruit (1)
Heart (1)
Hepatocyte (1)
Midgut diverticulum (1)
Milk (1)
Pancreas (1)
Plant stem cell (1)
Plantlet (1)
Shoot (1)
Stem cell (1)
Urinary bladder epithelium (1)
Urine (1)

Disease

Primary tumor (1)
Colorectal cancer, hyperamylasemia (1)
Anxiety Disorders (1)
Colorectal cancer (1)
Acute pancreatitis (1)
Breast cancer (1)
Celiac disease (1)
Chronic kidney disease (1)
Disease free (1)
Urinary bladder cancer (1)
Wheat allergy (1)

Technology Type

Mass Spectrometry (58)
Shotgun proteomics (38)
Bottom-up proteomics (8)
Data-dependent acquisition (7)
Gel-based experiment (5)
Mass spectrometry (4)
Affinity purification coupled with mass spectrometry proteomics (3)
MSE (2)
SWATH MS (2)
Mass spectrometry assay (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Data-independent acquisition (1)
Top-down proteomics (1)

Instrument Platform

Illumina NovaSeq 6000 (12)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (3)
Sequel II (1)
PromethION (1)
G2565AA DNA microarray scanner [Agilent] (1)
Illumina Genome Analyzer IIx (1)
NextSeq 2000 (1)
Illumina HiSeq 4000 (1)
LTQ (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Exploris 240 (1)
Orbitrap Fusion (1)
Orbitrap Fusion Tribrid mass spectrometer (1)
Q Exactive (1)
QTRAP 6500+ (1)
TimsTOF Pro (1)
TripleTOF 6600 (1)
Vanquish UPLC-ESI-LTQ-Orbitrap mass analyser (1)
Liquid Chromatography MS - positive - acquity-uplc-hss-t3 (1)
Liquid Chromatography MS - negative - acquity-uplc-hss-t3 (1)
Pegasus 4D GCxGC-TOFMS (1)
GCT Premier (Waters) (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2025 (26)
2015 (22)
2024 (20)
2014 (20)
2019 (18)
2026 (15)
2021 (14)
2011 (14)
2012 (13)
2010 (13)
2023 (13)
2022 (12)
2018 (11)
2013 (9)
2017 (7)
2020 (7)
2016 (5)
2007 (5)
2008 (4)
2009 (2)
2006 (1)
2005 (1)

CHEBI ID

CHEBI:17306 (2)
CHEBI:17992 (2)
CHEBI:16113 (2)
CHEBI:27693 (2)
CHEBI:18257 (2)
CHEBI:15428 (2)
CHEBI:17754 (2)
CHEBI:16958 (2)
CHEBI:16000 (2)
CHEBI:17268 (2)
CHEBI:16010 (2)
CHEBI:26078 (2)
CHEBI:30769 (2)
CHEBI:19324 (1)
CHEBI:17680 (1)
CHEBI:27569 (1)
CHEBI:28017 (1)
CHEBI:62006 (1)
CHEBI:61993 (1)
CHEBI:29042 (1)
CHEBI:16856 (1)
CHEBI:24636 (1)
CHEBI:17634 (1)
CHEBI:18367 (1)
CHEBI:17665 (1)
CHEBI:15422 (1)
CHEBI:16761 (1)
CHEBI:31006 (1)
CHEBI:141071 (1)
CHEBI:141070 (1)

Metabolite Name

Pyroglutamic acid (3)
Docosahexaenoic acid (3)
L-Tyrosine (3)
Maltol (2)
Ethanolamine (2)
Mesterolone (2)
Stigmasterol (2)
Benzamide (2)
Phosphoric acid (2)
Glycine (2)
Glycerol (2)
Thymine (2)
Geranylacetone (2)
Campesterol (2)
Pilocarpine (2)
Quinoline (2)
Ornithine (2)
Etiocholanolone (2)
Cholesterol (2)
Choline (2)
Citric acid (2)
Quinic acid (2)
Adenosine (2)
Guanine (2)
L-Tryptophan (2)
Cytidine (2)
Sucrose (2)
L-Phenylalanine (2)
11-KETOETIOCHOLANOLONE (1)
Flabellidine (1)

First Public Date

2024 (29)
2025 (27)
2026 (21)
2014 (19)
2021 (16)
2023 (13)
2022 (12)
2018 (12)
2013 (12)
2019 (11)
2015 (10)
2017 (9)
2020 (7)
2016 (3)
2012 (1)

Modelling Approach

Ordinary differential equation model (1)

Study status

Not yet recruiting (1)
Recruiting (1)
Completed (1)

Lab affiliation

Department of Bioactive and Functional Food Chemistry, Institute of Applied Biosciences, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany (2)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences (2)
Institute of Ecology and Evolution, University of Bern, Baltzerstrasse 6, CH-3012 Bern, Switzerland (2)
Manchester Institute of Biotechnology, School of Biological Sciences, Manchester Academic Health Sciences Centre, The University of Manchester, Princess Street, Manchester, M1 7DN, UK (2)
North Carolina State University (2)
University of York (2)
AGES - Austrian Agency for Health and Food Safety, Institute for Animal Nutrition and Feed, Vienna, Austria (1)
Affiliation CECAD Research Center, University Hospital Cologne (1)
Analytical Food Chemistry, University of Stuttgart, Germany (1)
Applied Veterinary Morphology, Department of Veterinary Sciences, University of Antwerp, Belgium (1)
BU Bioscience, Wageningen Plant Research, Wageningen UR. the Netherlands (1)
Bavarian Center for Biomolecular Mass Spectrometry Technische Universität München Gregor-Mendel-Straße 4 85354 Freising DEUTSCHLAND / GERMANY (1)
Bavarian Center for Biomolecular Mass Spectrometry, TUM School of Life Sciences, Technical University Munich (TUM), Gregor-Mendel-Straße 4, 85354 Freising, GERMANY (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, Utrecht, The Netherlands and Netherlands Proteomics Center, Utrecht, The Netherlands (1)
Butantan Institute, Biochemistry Laboratory, São Paulo, 05503900, Brazil (1)
Center of Systems Biology, Biomedical Research Foundation, Academy of Athens, Greece (1)
Clarkson University (1)
Core Facility Mass Spectrometry BOKU, University of Natural Resources and Life Sciences, Vienna, Austria (1)
Department of Biochemistry and Molecular Biology, University of Salamanca (Salamanca, Spain). Instituto de Investigación Biomédica de Salamanca (IBSAL) (Salamanca, Spain). (1)
Department of Biomedical Sciences, University of Padova, Italy (1)
Department of Immunology and Cell biology, Université de Sherbrooke, 3201, Jean-Mignault, Sherbrooke, Québec, J1E 4K8, Canada (1)
Department of Medical Biology, UiT- The Arctic University of Norway, 9019 Tromsø, Norway (1)
Department of Microbial Proteomics, Institute of Microbiology, University of Greifswald, Greifswald, Germany (1)
Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI, USA (1)
Department of Molecular Microbiology, Washington University School of Medicine, 4940 Parkview Place, Campus Box 8230, St. Louis, MO 63110, USA (1)
Department of Parasitology, Faculty of Science, Charles University BIOCEV, Průmyslová 595, 252 50 Vestec, Czech Republic (1)
Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Prague, Czech Republic ORCID logohttp://orcid.org/0000-0001-6976-8446 (1)
Department of Pratacultural Sciences, College of Agriculture, Hunan Agricultural University, Changsha, Hunan 410128, China (1)
Dept. of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel (lab head) (1)
Dpt. Microbiología del Suelo y Sistemas Simbióticos Estación Experimental del Zaidín, CSIC Profesor Albareda, 1 18008 Granada (Spain) Tlf. +34 958181600 Ext. 176 (1)

Keyword

Colorectal Surgery (1)

IsPrivate

False (1)

Classification

bacteria (14)
fungi (10)

Study type

Transcription profiling by array (54)
RNA-seq of coding RNA (31)
Other (11)
RNAi profiling by array (3)
Unknown experiment type (2)
ChIP-chip by array (1)
Comparative genomic hybridization by array (1)
Ribo-seq (1)
RNA-seq of total RNA (1)
RNA-seq of non coding RNA (1)
Other (1)
Observational (1)
Interventional (1)

Release Date

2022 (493)
2023 (485)
2025 (437)
2024 (402)
2021 (398)
2020 (290)
2019 (220)
2018 (183)
2017 (126)
2015 (121)
2016 (117)
2014 (94)
2013 (60)
2012 (59)
2026 (56)
2011 (41)
2010 (33)
2008 (25)
2007 (17)
2009 (15)
2006 (15)
2003 (10)
2005 (8)
2000 (8)
2004 (7)
2002 (6)
2001 (6)
1999 (5)
1998 (4)
1994 (1)

Location

China (1)
Australia (1)

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Enhancing sensory quality of heat-not-burn tobacco via bioaugmentation with Cytobacillus oceanisediminis C4 and Amylase

Tobacco fermentation is a crucial process for improving tobacco quality by reducing undesirable substances. In this study, an enzyme–microbe combined fermentation strategy was established and evaluated. Cytobacillus oceanisediminis C4 combined with amylase pretreatment was applied in the fermenta...

2025-12-26 | MTBLS13570 | MetaboLights

Alpha-amylase overproduction in Streptomyces lividans

The gene aml encoding alpha-amylase in Streptomyces lividans was cloned in the multicopy plasmid pIJ486, generating plasmid pAMI11. Plasmid pAMI11 and pIJ486 were propagated in S. lividans TK21 to obtain S. lividans TK21(pAMI11) and its isogenic strain S. lividans TK21(pIJ486). Transcriptional profi...

ORGANISM(S): Streptomyces lividans

2015-07-23 | E-GEOD-61448 | biostudies-arrayexpress

Streptococcus gordonii gene response to the binding of human salivary amylase.

Streptococcus gordonii, an important primary colonizer of dental plaque biofilm, specifically binds to salivary amylase via the surface-associated amylase-binding protein A (AbpA). We hypothesized that amylase binding to S. gordonii modulates expression of chromosomal genes, which could influence ba...

ORGANISM(S): Streptococcus gordonii str. Challis

2011-09-02 | E-GEOD-31830 | biostudies-arrayexpress

Amylase study hifiasm assemblies

PRJEB78558 | ENA

Secretion stress caused by overexpression of heterologous α-amylase in Bacillus subtilis

Transcriptome analysis was used to investigate the global stress response of the Gram-positive bacterium Bacillus subtilis caused by overproduction of the well-secreted AmyQ α-amylase from Bacillus amyloliquefaciens. Analyses of the control and overproducing strains were carried out at the end of ex...

ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168

2007-10-01 | E-GEOD-8014 | biostudies-arrayexpress

Amylase study ancient genomes downsampling data files

PRJEB78827 | ENA

CRISPRi screen for a-amylase yield improvements in Bacillus subtilis

PRJNA744212 | ENA

Streptococcus gordonii gene response to the binding of human salivary amylase.

ORGANISM(S): Streptococcus gordonii str. Challis

2011-09-03 | GSE31830 | GEO

Alpha-amylase overproduction in Streptomyces lividans

ORGANISM(S): Streptomyces coelicolor A3(2) Streptomyces lividans

2015-07-23 | GSE61448 | GEO