An Howard H - OmicsDI

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Unknown (4159)
Transcriptomics (122)
Proteomics (54)
Genomics (24)
Models (6)
Metabolomics (4)
Genomic (3)
Multiomics (1)

Organisms

Homo sapiens (85)
Mus musculus (37)
Rattus norvegicus (12)
Saccharomyces cerevisiae (12)
Drosophila melanogaster (9)
Arabidopsis thaliana (6)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (4)
Macaca mulatta (3)
Taeniopygia guttata (2)
Legionella pneumophila (2)
Rattus rattus (2)
Mycobacterium tuberculosis (2)
Glycine max (2)
Escherichia coli (1)
Escherichia coli K-12 (1)
Mammalia (1)
Xenopus laevis (1)
cellular organisms (1)
Methanosarcina acetivorans (1)
Ruegeria pomeroyi (1)
Colletotrichum higginsianum (1)
Pseudomonas putida F1 (1)
Vitis sp. cv. 'Norton' (1)
Yersinia pseudotuberculosis (1)
Toxoplasma gondii (1)
Bos indicus (1)
Yersinia enterocolitica (1)
Staphylococcus aureus (1)
Bos taurus (1)
Candida albicans (1)

Organisms

Mus musculus (2)
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (1)
Mycobacterium tuberculosis (1)

Repository

biostudies-arrayexpress (126)
pride (50)
EGA (16)
BioModels (5)
MetaboLights (4)
ENA (4)
dbGaP (3)
MassIVE (3)
FAIRDOMHub (1)
PanoramaPublic (1)

Tissue

Cell culture (11)
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Permanent cell line cell (3)
Early embryonic cell (2)
Embryonic stem cell (2)
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Heart (2)
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Antler (1)
Beige adipocyte (1)
Blood (1)
Blood plasma (1)
Blood serum (1)
Brain (1)
Brown adipocyte (1)
Brown adipose tissue (1)
Embryonic fibroblast (1)
Epithelial cell of large intestine (1)
Erythrocyte (1)
HeLa cell (1)
Hepatocyte (1)
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Macrophage cell line (1)
Pancreas (1)
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Pluripotent stem cell (1)
Small intestine mucosa (1)

Disease

Cardiovascular system disease (2)
Leukemia (2)
HIV encephalitis (1)
Primary tumor (1)
Normal (1)
Acute leukemia (1)
Colon cancer (1)
Inflammation (1)
Lung cancer (1)
Retinal degeneration (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (50)
Shotgun proteomics (27)
Gel-based experiment (13)
Affinity purification coupled with mass spectrometry proteomics (11)
Bottom-up proteomics (7)
Data-dependent acquisition (7)
Mass spectrometry (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-independent acquisition (2)
Illumina HiSeq 2000, Illumina_2.5M (1)
SRM/MRM (1)
SWATH MS (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Orbitrap Fusion Lumos (2)
Lightwave (1)
Variable Atmosphere Incubator (1)
GenePix 4000B [Axon Instruments] (1)
Illumina Genome Analyzer II (1)
NextSeq 500 (1)
Q Exactive (1)
Flow injection analysis MS - (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2013 (21)
2010 (15)
2011 (13)
2024 (12)
2014 (12)
2012 (12)
2020 (11)
2018 (11)
2008 (11)
2006 (11)
2026 (9)
2009 (8)
2022 (7)
2015 (7)
2007 (7)
2021 (7)
2025 (6)
2016 (4)
2005 (3)
2023 (2)
2019 (1)

UNIPROT ID/AC

P00573 (1)
P07659 (1)
P09560 (1)
P26696 (1)
P42212 (1)
Q05116 (1)
Q90W58 (1)

CHEBI ID

CHEBI:33699 (2)
CHEBI:16474 (2)
CHEBI:25017 (2)
CHEBI:28300 (2)
CHEBI:29016 (2)
CHEBI:6650 (2)
CHEBI:78320 (2)
CHEBI:15379 (1)
CHEBI:16240 (1)
CHEBI:16796 (1)
CHEBI:17535 (1)
CHEBI:18009 (1)
CHEBI:18276 (1)
CHEBI:18421 (1)
CHEBI:33697 (1)
CHEBI:36080 (1)
CHEBI:55474 (1)
CHEBI:56080 (1)
CHEBI:61448 (1)
CHEBI:134428 (1)
CHEBI:14321 (1)
CHEBI:15345 (1)
CHEBI:15351 (1)
CHEBI:15422 (1)
CHEBI:15467 (1)
CHEBI:15531 (1)
CHEBI:155821 (1)
CHEBI:15611 (1)
CHEBI:15741 (1)
CHEBI:15843 (1)

Metabolite Name

Aspartate (2)
Glutamate (2)
Lactate (2)
Leucine (2)
Malate (2)
Succinate (2)
1-methylguanosine (1)
2,3-Dihydroxybenzoic acid (1)
2-phosphoglycolate (1)
3-Methylxanthine (1)
ADP (1)
AMP (1)
ATP (1)
Acetoacetyl-CoA (1)
Acetyl-CoA (1)
Adenosine (1)
Alanine (1)
Arginine (1)
Aspartame (1)
CE 18:0 (1)
Cer 34:0;2O (1)
Cer 34:1;2O|Cer 18:1;2O/16:0 (1)
Cer 36:1;2O (1)
Cer 38:0;3O (1)
Cer 40:0;2O|Cer 18:0;2O/22:0 (1)
Cer 40:1;2O|Cer 18:1;2O/22:0 (1)
Cer 40:2;2O|Cer 18:1;2O/22:1 (1)
Cer 42:0;2O|Cer 18:0;2O/24:0 (1)
Cer 42:0;3O|Cer 18:0;2O/24:0;O (1)
Cer 42:1;2O|Cer 18:1;2O/24:0 (1)

First Public Date

2014 (3)
2025 (1)

Modelling Approach

Ordinary differential equation model (5)

Lab affiliation

David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, USA (6)
Centre for Applied Pharmacokinetic Research, School of Health Sciences, The University of Manchester, UK (2)
Howard Hughes Medical Institute Beth Israel Deaconess Medical Center Harvard Medical School (2)
Howard Hughes Medical Institute NYU School of Medicine-Smilow Research Center Biochemistry Department (2)
Laboratory of chemical biology and microbial pathogenesis, The Rockefeller University, New York, USA (2)
1.Division of Infectious Diseases, Brigham and Women's Hospital, Boston, MA, USA 2.Department of Microbiology, Harvard Medical School, Boston, MA, USA 3.Howard Hughes Medical Institute, Boston, MA, USA (1)
1Division of Hematology/Oncology, Boston Children’s Hospital and Department of Pediatric Oncology, Dana-Farber Cancer Institute (DFCI), Harvard Stem Cell Institute, Harvard Medical School, Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Chair, Cancer Biology & Genetics Program, SKI; Chair, Geoffrey Beene Cancer Research Center; Investigator, Howard Hughes Medical Institute; (1)
Chief Scientific Officer, BioFrontiers Institute Distinguished Professor, Department of Molecular, Cellular, and Developmental Biology Professor, Howard Hughes Medical Institute (1)
Clinical Diagnostic Laboratory Department of Clinical Veterinary Medicine Vetsuisse Faculty University of Bern Bern Switzerland (1)
David Geffen School of Medicine, UCLA, USA BD2K Center of Excellence for Big Data Computing at UCLA, UCLA, USA (1)
David H. Koch Institute for Integrative Cancer Research Howard Hughes Medical Institute Massachusetts Institute of Technology Cambridge, MA 02139, US (1)
Department of Biochemistry and Biophysics, University of California San Franscisco, San Francisco, CA, USA; Howard Hughes Medical Institute (1)
Department of Biology, Massachusetts Institute of Technology, Building 68, 31 Ames St., Cambridge, MA 02139 Howard Hughes Medical Institute, Chevy Chase, MD (1)
Department of Chemistry, Stanford University Howard Hughes Medical Institute, Stanford University (1)
Department of Chemistry, Stanford University, Stanford, CA 94305; Sarafan ChEM-H, Stanford University, Stanford, CA 94305; Howard Hughes Medical Institute, Stanford University, Stanford, CA 94305 (1)
Department of Genetics, Harvard Medical School, Boston, MA 021152 Division of Genetics, Department of Medicine, Brigham and Women's Hospital, Boston, MA0211 Department of Cell Biology, Harvard Medical School, Boston, MA 02115 Howard Hughes Medical Institute, Boston, MA 02115 (1)
Department of Genetics, Harvard Medical School, Boston, MA, 02115, USA Division of Genetics, Brigham & Women's Hospital, Boston, MA 02115, USA Howard Hughes Medical Institute, Boston, MA 02115, USA (1)
Department of Immunology and Microbiology, Scripps Research, USA (1)
Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA 94720 USA California Institute for Quantitative Biosciences, University of California at Berkeley, Berkeley, CA 94720 Howard Hughes Medical Institute, University of California at Berkeley, Berkeley, CA 94720 USA (1)
Department of Plant Pathology, University of Georgia, Athens, Georgia, USA (1)
Department of Systems Biology, University of Massachusetts Chan Medical School, investigator of the Howard Hughes Medical Institute. (1)
Departments of Immunology & Microbiology and Chemistry Scripps Research (1)
Diabetes, Endocrinology and Metabolism at Beth Israel Deaconess Medical Center and Harvard Medical School. Howard Hughes Medical Institute. Boston, MA, 02115 (1)
Experimental Systems Immunology, Max Planck Institute of Biochemistry, Martinsried, Germany. (1)
Functional Proteomics, ICR (1)
Howard Hughes Medical Institute Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
Howard Hughes Medical Institute and Department of Cell Biology Harvard Medical School 240 Longwood Avenue Boston, Massachusetts 02115, USA (1)
Howard Hughes Medical Institute and Department of Molecular Biology and Genetics, Johns Hopkins Medical Institute, 725 N. Wolfe Street 714 PCTB Baltimore, MD 21205 410-614-4928 (1)
Laboratory of Chemical Biology and Microbial Pathogenesis The Rockefeller University New York NY, USA (1)

IsPrivate

False (5)

Classification

bacteria (2)

Study type

Transcription profiling by array (99)
RNA-seq of coding RNA (8)
Unknown experiment type (5)
Methylation profiling by array (5)
ChIP-seq (3)
Comparative genomic hybridization by array (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2021 (317)
2014 (290)
2022 (289)
2020 (269)
2015 (269)
2023 (249)
2016 (238)
2019 (236)
2018 (224)
2025 (221)
2017 (221)
2024 (217)
2013 (201)
2012 (186)
2011 (178)
2010 (160)
2009 (151)
2008 (103)
2007 (59)
2006 (58)
2026 (30)
2004 (25)
2005 (22)
2003 (16)
2002 (15)
1999 (11)
1998 (10)
2001 (8)
1997 (6)
2000 (5)

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Intracellular proton access in a Cl(-)/H(+) antiporter.

Not available

S-EPMC3519907 | biostudies-literature

An aqueous H+ permeation pathway in the voltage-gated proton channel Hv1.

Not available

S-EPMC4035905 | biostudies-literature

Transcription profiling of human CD14+ peripheral blood monocytes from subjects infected with H.drcreyi reveals host susceptibility to H. ducreyi infection is associated with unique transcript profiles in tissue and dendritic cells

Comparison of gene expression from subjects who resolved or formed pustules to H.ducreyi. In human inoculation experiments, the cutaneous immune response to Haemophilus ducreyi consists of serum, PMN, macrophages, T cells and myeloid DC. In reinfection experiments, some subjects form pustules twice...

ORGANISM(S): Homo sapiens

2008-06-13 | E-GEOD-5547 | biostudies-arrayexpress

Separate ion pathways in a Cl-/H+ exchanger.

Not available

S-EPMC2266597 | biostudies-literature

CIDR: Collaborative Study on the Genetics of Alcoholism (COGA)

This is a case-control study of alcoholism, in which the subjects have been drawn from the Collaborative Study on the Genetics of Alcoholism (COGA), a large, ongoing family-based study that includes subjects from seven sites around the US. COGA has gathered detailed, standardized data on ...

phs000125 | dbGaP

Factors influencing treatment outcome in hepatitis C virus minority patients at an inner-city hospital: A STROBE-complaint article.

Not available

S-EPMC7220685 | biostudies-literature

Ion permeation through a Cl--selective channel designed from a CLC Cl-/H+ exchanger.

Not available

S-EPMC2516207 | biostudies-literature

An Old Remedy for a New Problem? Identification of Ooencyrtus kuvanae (Hymenoptera: Encyrtidae), an Egg Parasitoid of Lycorma delicatula (Hemiptera: Fulgoridae) in North America.

Not available

S-EPMC5270392 | biostudies-literature

Mutations in the proteolipid subunits of the vacuolar H+-ATPase provide resistance to indolotryptoline natural products.

Not available