Anderson D D - OmicsDI

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Unknown (13403)
Transcriptomics (259)
Proteomics (172)
Genomics (151)
Metabolomics (116)
Genomic (6)
Models (3)
Clinical (1)

Organisms

Homo sapiens (206)
Mus musculus (63)
Rattus norvegicus (11)
Euphorbia esula (10)
Gallus gallus (4)
Bacillus anthracis (3)
Pseudomonas aeruginosa (3)
Sus scrofa (3)
Arabidopsis thaliana (3)
Coprinopsis cinerea (2)
synthetic construct (2)
Aedes aegypti (2)
Ovis aries (2)
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Candida albicans (2)
Drosophila melanogaster (2)
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Mustela putorius furo (1)
Staphylococcus aureus subsp. aureus Mu50 (1)
Leishmania major (1)
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Macaca fascicularis (1)
Schistosoma mansoni (1)
Medicago truncatula (1)
Schizosaccharomyces pombe (1)
Staphylococcus aureus (1)
Salmo salar (1)

Organisms

Homo sapiens (44)
Mus musculus (21)
Saimiri boliviensis (3)
Gambierdiscus sp. D Anderson laboratory (1)
gut metagenome (1)

Repository

biostudies-arrayexpress (270)
pride (94)
ENA (81)
MassIVE (68)
MetaboLights (65)
EGA (58)
GNPS (48)
dbGaP (6)
jPOST (4)
PanoramaPublic (4)
BioModels (3)
geo (3)
MetabolomicsWorkbench (3)
PAXDB (1)

Tissue

Cell culture (11)
Permanent cell line cell (5)
Whole body (4)
Epithelial cell (4)
T cell (4)
Blood (4)
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Blood cell (3)
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Blood (1)
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Calu-3 cell (1)
Blood vessel (1)
PanIN cell (1)
Epithelium of pancreatic duct (1)

Disease

Acute leukemia (5)
Breast cancer (3)
Cervix carcinoma (2)
Cardiovascular system disease (2)
T. circumcincta infection (1)
Myelogenous leukaemia (1)
Colorectal cancer (1)
Multiple myeloma (1)
Normal (1)
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Cancer (1)
Mucinous pancreas adenocarcinoma (1)
Colorectal carcinoma (1)
Barrett's esophagus (1)
Triple-receptor negative breast cancer (1)
Swine influenza (1)
Peritoneal mesothelioma (1)
Lung small cell carcinoma (1)
Avian influenza (1)
Skin melanoma (1)
Squamous cell carcinoma (1)
Type 1 diabetes mellitus (1)
Skin cancer (1)
Plasmodium falciparum malaria (1)
Severe acute respiratory syndrome (1)
Prostate adenocarcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Lung cancer (1)
Ovarian serous carcinoma (1)
Melanoma (1)

Technology Type

Mass Spectrometry (97)
Shotgun proteomics (47)
Mass spectrometry (45)
Bottom-up proteomics (18)
NMR spectroscopy (15)
Affinity purification coupled with mass spectrometry proteomics (15)
Data-dependent acquisition (11)
Mass spectrometry assay (6)
SWATH MS (6)
Gel-based experiment (4)
ESI (3)
Data-independent acquisition (3)
HDMSE (2)
SRM/MRM (2)
Top-down proteomics (2)
AB SOLiD 4 System, Illumina HiSeq 2500, Illumina HiSeq 2000, AB SOLiD System 3.0 (1)
Illumina 1.2M, Affymetrix 6.0 (1)
Illumina HiSeq 2500 (1)
Affymetrix 6.0 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
Immunopeptidomics (1)

Instrument Platform

LTQ Orbitrap Velos (46)
GC-MS (21)
GC MS (12)
Orbitrap Fusion Lumos (7)
Q Exactive (7)
LTQ Orbitrap (6)
Illumina NovaSeq 6000 (4)
Illumina HiSeq 4000 (4)
NextSeq 500 (3)
Q Exactive Plus (3)
10X Genomics Chromium (2)
G2505B DNA microarray scanner (2)
N/A (2)
Illumina HiSeq 2500 (2)
Agilent 7890A GC with 5975C inert XL MSD (2)
NHMFL 21T FT-ICR-MS (2)
Illumina Genome Analyzer II (1)
Axon GenePix 4000B scanning hardware (1)
Illumina HiSeq 2000 (1)
Illumina HiSeq 3000 (1)
6110 Quadrupole LC/MS (1)
LTQ Orbitrap Velos Pro (1)
Agilent GC-MS (1)
Q-exactive HF-x (1)
Agilent GC/MSD 5975C (1)
Q-Exactive Plus with 11-meter SLIM (1)
Exactive (1)
LTQ Velos (1)
Orbitrap Astral (1)
LTQ Orbitrap Elite (1)

Publication Date

2016 (65)
2013 (44)
2015 (41)
2010 (36)
2012 (32)
2021 (30)
2023 (29)
2017 (29)
2019 (26)
2014 (26)
2022 (25)
2011 (25)
2024 (24)
2008 (23)
2018 (21)
2026 (20)
2025 (19)
2020 (16)
2009 (12)
2007 (9)
2006 (2)
2005 (2)

UNIPROT ID/AC

Q01094 (1)
P06400 (1)
P24864 (1)
P24385 (1)
SPRTN_MOUSE (1)
BATF_MOUSE (1)
S35F2_MOUSE (1)
CCND2_MOUSE (1)
JAML_MOUSE (1)
I18RA_MOUSE (1)
CENPS_MOUSE (1)
DEFI8_MOUSE (1)
CF97D_MOUSE (1)
RNF4_MOUSE (1)
TM154_MOUSE (1)
TBRG1_MOUSE (1)
S18L2_MOUSE (1)
ARMC7_MOUSE (1)
TAF13_MOUSE (1)
ELK4_MOUSE (1)
ZBTB1_MOUSE (1)
MOT7_MOUSE (1)
LY65B_MOUSE (1)
GFI1_MOUSE (1)
ZDH15_MOUSE (1)
PRS40_MOUSE (1)
KLRA3_MOUSE (1)
LHPL4_MOUSE (1)
F10C1_MOUSE (1)
SKA2_MOUSE (1)

CHEBI ID

CHEBI:30769 (25)
CHEBI:17568 (22)
CHEBI:16704 (20)
CHEBI:16737 (20)
CHEBI:15354 (20)
CHEBI:15428 (19)
CHEBI:17750 (19)
CHEBI:16449 (19)
CHEBI:16919 (19)
CHEBI:17895 (19)
CHEBI:17368 (19)
CHEBI:25017 (18)
CHEBI:15741 (18)
CHEBI:15891 (18)
CHEBI:32816 (18)
CHEBI:16335 (17)
CHEBI:18019 (17)
CHEBI:16414 (17)
CHEBI:17295 (17)
CHEBI:17596 (17)
CHEBI:18257 (16)
CHEBI:27266 (16)
CHEBI:27897 (16)
CHEBI:17191 (16)
CHEBI:18237 (15)
CHEBI:24898 (15)
CHEBI:18050 (15)
CHEBI:15971 (15)
CHEBI:16643 (15)
CHEBI:17992 (14)

Metabolite Name

Glycine (16)
Uracil (15)
Choline (15)
Creatinine (15)
Citric acid (14)
Xanthine (14)
Creatine (14)
L-Tyrosine (14)
Hypoxanthine (14)
L-Valine (13)
L-Isoleucine (13)
L-Phenylalanine (13)
L-Histidine (12)
L-Leucine (12)
Pyruvic acid (11)
L-Alanine (11)
L-Lysine (11)
Adenosine (11)
L-Glutamine (11)
Uridine (11)
L-Methionine (11)
Inosine (11)
L-Lactic acid (10)
L-Proline (10)
Ornithine (10)
L-Arginine (10)
Succinic acid (10)
Taurine (10)
Uric acid (10)
D-Glucose (9)

First Public Date

2014 (23)
2025 (15)
2022 (7)
2021 (7)
2023 (6)
2019 (6)
2024 (5)
2020 (3)
2013 (3)
2026 (2)
2018 (2)
2016 (2)

Modelling Approach

Ordinary differential equation model (1)

Study status

Completed (1)

Lab affiliation

Department of Leukemia, Division of Cancer Medicine, The University of Texas MD Anderson Cancer Center, Houston, TX (3)
Department of Biochemistry and Genetics, La Trobe Institute for Molecular Science, La Trobe University, Melbourne, Victoria, Australia (2)
Department of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX 77030, USA (2)
Leukemia Department, MD Anderson Cancer Center, Houston, TX 77030 (2)
CRUK Beatson Institute (2)
1) Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 2) Proteomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA 3) Metabolomics Core Facility, Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (MDACC), Houston, TX 77030, USA (2)
Institute of Integrative Biology, University of Liverpool, Liverpool, UK (1)
ProGenTomics, Laboratory of Pharmaceutical Biotechnology, Ghent University, Ghent, Belgium (1)
Cell Signalling and Proteomics Group, Centre for Genomics and Computational Biology, Barts Cancer Institute, Queen Mary University of London, London, EC1M6BQ, UK (1)
University of Oxford, The Jenner Inistitute (1)
Microbiology Department, The Ohio State University, United States of America (1)
Division of Rheumatology, Inflammation and Immunity, Brigham and Women’s Hospital, Boston, MA, USA (1)
Centre for Innate Immunity and Infectious Diseases, Hudson Institute of Medical Research and Department of Molecular and Translational Sciences, Monash University, Clayton, Victoria, Australia. (1)
Human Immunological Diseases Section, Laboratory of Clinical Immunology and Microbiology, Division of Intramural Research, NIAID, NIH, Department of Health and Human Services, Unites States Government (1)
Clinical & Health Sciences, University of South Australia, Adelaide, SA 5095, Australia. (1)
Cellular and Molecular Pathology, UCSF (1)
Zoology: Biodiversity and Toxicology, Hasselt University –Campus Diepenbeek, Agoralaan 1, Gebouw D, 3590, Diepenbeek,Belgium. (1)
Assistant Professor of Neurosurgery Department of Neurosurgery Houston Methodist Research Institute Weill Cornell Medical College (1)
The University of Texas MD Anderson Cancer Center (1)
Department of Physiology and Pharmacology, Cumming School of Medicine, University of Calgary, Alberta T2N 1N4 Canada Snyder Insitute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Alberta T2N 1N4 Canada (1)
Duke University Dept of Medicine (1)
Drug Delivery, Disposition and Dynamics, Monash Institute of Pharmaceutical Sciences, Monash University, 381 Royal Parade, Parkville, Victoria 3052, Australia (1)
Director of the Proteomics Core at Indiana University School of Medicine (1)
Director of Proteomics Core (1)
Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA (1)
KU Leuven - University of Leuven, Department of Neurosciences, Experimental Neurology and Leuven Research Institute for Neuroscience and Disease (LIND), 3000 Leuven, Belgium VIB, Vesalius Research Center, Laboratory of Neurobiology, 3000 Leuven, Belgium (1)
Proteomics, Max Planck Institute of Biophysics, Frankfurt am Main, Germany (1)
Monash Institute of Pharmaceutical Sciences, Monash University, Melbourne, Australia (1)
Howard Hughes Medical Institute, Senator Paul D. Wellstone Muscular Dystrophy Specialized Research Center, Department of Molecular Physiology and Biophysics and Department of Neurology, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa; Iowa City, Iowa, 52242; USA. (1)
Oerthbio (1)

Keyword

Gastrointestinal Cancers (1)
Gastro-Intestinal Chemotherapy (1)
M.D. Anderson Symptom Inventory (1)
MDASI-GI (1)
Medical Oncology (1)
GI (1)
Gastrointestinal (1)
Pancreas (1)
Liver (1)
Colorectal (1)
Gastric (1)

IsPrivate

False (3)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (190)
RNA-seq of coding RNA (23)
Comparative genomic hybridization by array (12)
ChIP-seq (10)
Unknown experiment type (8)
RNA-seq of coding RNA from single cells (5)
RNA-seq of non coding RNA (4)
Other (3)
RNAi profiling by array (2)
ChIP-chip by tiling array (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
Genotyping by array (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by array (1)
Proteomic profiling by array (1)
Methylation profiling by high throughput sequencing (1)
Interventional (1)

Release Date

2022 (1248)
2021 (1170)
2023 (1121)
2025 (1070)
2024 (1024)
2020 (911)
2018 (840)
2019 (791)
2017 (757)
2016 (721)
2015 (663)
2014 (607)
2013 (502)
2012 (452)
2011 (409)
2010 (397)
2009 (321)
2008 (187)
2026 (157)
2007 (99)
2006 (77)
2005 (46)
2003 (26)
2004 (23)
2002 (17)
2000 (10)
2001 (9)
1999 (7)
1998 (5)
1997 (3)

Location

United States (1)

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Gambierdiscus sp. D Anderson laboratory

Gambierdiscus sp. D Anderson laboratory Raw sequence reads

PRJNA1136917 | ENA

Psychometric validation of the Chinese version of the M. D. Anderson Symptom Inventory-Head and Neck Module in patients with nasopharyngeal carcinoma.

Not available

S-EPMC9072183 | biostudies-literature

The anticancer plant triterpenoid, avicin D, regulates glucocorticoid receptor signaling: implications for cellular metabolism.

Not available

S-EPMC3221683 | biostudies-literature

NUDCD3 deficiency disrupts V(D)J recombination to cause SCID/Omenn syndrome

Inborn errors of T cell development present a pediatric emergency in which timely curative therapy is informed by molecular diagnosis. In 9 affected patients across 3 consanguineous kindreds, we detected homozygosity for a single deleterious missense variant in the gene NudC domain containing 3 (NUD...

ORGANISM(S): Homo sapiens (Human)

2024-09-27 | PXD035840 | Pride