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Transcriptomics14028s araC RNA-Seq
We used RNA-seq to determine the effects of AraC and arabinose on RNA levels genome-wide in S. enterica. Wild-type or delta araC mutant cells were grown in both the presence and absence of 0.2% L-arabinose. RNA-Seq libraries from two independent biological replicate samples were sequenced for (i) wi...
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028s Wu 
2013-10-04 | E-MTAB-1901 | biostudies-arrayexpress
TranscriptomicsTranscription profiling by array of E. coli NCTC 9001 challenged with four different cationic antimicrobial peptides
Obtaining an in depth understanding of the arms races between peptides comprising the innate immune response and bacterial pathogens is of fundamental interest and will inform the development of new antibacterial therapeutics. Many cationic antimicrobial peptides (AMPs) share a range of structural a...
ORGANISM(S): Escherichia coli 
2014-01-21 | E-MTAB-1703 | biostudies-arrayexpress
TranscriptomicsLongSAGE transcriptome profiling in the widespread marine coccolithophore Emiliania huxleyi
The abundant and widespread coccolithophore Emiliania huxleyi plays an important role in mediating CO2 exchange between the ocean and the atmosphere through its impact on marine photosynthesis and calcification. Here, we use long serial analysis of gene expression (SAGE) to identify E. huxleyi genes...
ORGANISM(S): Emiliania huxleyi CCMP1516 
2007-07-07 | E-GEOD-8376 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human healthy subjects, patients with Crohns Disease, and patients with Ulcerative Colitis to compare PBMCs in inflammatory bowel disease
Comparison of PBMC transcriptional profiles in healthy subjects, patients with Crohn's Disease, and patients with Ulcerative Colitis
ORGANISM(S): Homo sapiens 
2007-09-07 | E-GEOD-3365 | biostudies-arrayexpress
GenomicsSalmonella 14028s AraC ChIP-Seq
We mapped the genome-wide binding of C-terminally FLAG-tagged AraC in S. enterica subsp. enterica serovar Typhimurium strain 14028s using ChIP coupled with deep sequencing (ChIP-seq). We identified five putative target loci for AraC: upstream of araB/araC, araE, araJ, STM14_0178, and within sseD.
ORGANISM(S): Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S 
2013-10-09 | E-MTAB-1915 | biostudies-arrayexpress
TranscriptomicsVariation in homeodomain DNA-binding revealed by high-resolution analysis of sequence preferences
Most homeodomains are unique within a genome, yet many are highly conserved across vast evolutionary distances, implying strong selection on their precise DNA-binding specificities. We determined the binding preferences of the majority (168) of mouse homeodomains to all possible 8-base sequences, re...
ORGANISM(S): Mus musculus 
2010-06-26 | E-GEOD-11239 | biostudies-arrayexpress
TranscriptomicsRNA-Seq and BS-Seq of Sorghum bicolor tissues
This experiment contains the subset of data corresponding to sorghum RNA-Seq data from experiment E-GEOD-50464 (http://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-50464/), which goal is to examine the transcriptome of various Sorghum bicolor (BTx623) tissues: flowers, vegetative and floral meriste...
ORGANISM(S): Sorghum bicolor 
2014-08-29 | E-MTAB-3839 | biostudies-arrayexpress
UnknownImpact of Initial CSF Findings on Outcome Among Patients With National Cancer Institute Standard- and High-Risk B-Cell Acute Lymphoblastic Leukemia: A Report From the Children's Oncology Group.
Not available
S-EPMC5536164 | biostudies-literature
UnknownSystemic therapy in men with metastatic castration-resistant prostate cancer:American Society of Clinical Oncology and Cancer Care Ontario clinical practice guideline.
Not available
S-EPMC4876355 | biostudies-literature
UnknownGraft-versus-host disease and graft-versus-tumor effects after allogeneic hematopoietic cell transplantation.
Not available
S-EPMC3625710 | biostudies-literature
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