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ProteomicsProteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
The rumen harbors a complex mixture of archaea, bacteria, protozoa and fungi that efficiently breakdown plant biomass and its complex dietary carbohydrates into soluble sugars that can be fermented and subsequently converted into metabolites and nutrients utilized by the host animal. While rumen bac...
ORGANISM(S): prokaryotic environmental samples Neocallimastigomycetes 
2020-10-14 | PXD017007 | Pride
Lc-msms Anerobic rumen fungi Rumen microbiome Metaproteome 
TranscriptomicsBacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures
mRNA sequencing in bacteria is challenging due to the abundance of ribosomal rRNA that cannot be easily removed prior to sequencing. While commercially available kits target specific rRNA sequences found in defined lists of common bacterial species, they are frequently inefficient when applied to ot...
ORGANISM(S): Escherichia coli Fibrobacter succinogenes Geobacter metallireducens Anaeromyces robustus Caecomyces churrovis 
2023-09-29 | GSE223404 | GEO
GenomicsBacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures
Bacterial mRNA sequencing through targeted rRNA depletion for efficient RNA-seq in varied species and co-cultures
PRJNA925939 | ENA
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