Sort   by:  
 Page size 
ProteomicsRNA antisense oligonucleotide pulldown coupled with mass spectrometry (MS) to identify C1QTNF1-AS1 protein interactors
We used C1QTNF1-AS1 antisense oligonucleotide pulldown coupled with MS to identify protein interactors of lncRNA C1QTNF1-AS1 in human HCT116 cells. Five antisense oligonucleotides against C1QTNF1-AS1 and luciferase (negative control) were used for the pulldown. Three independent oligonucleotides (C...
ORGANISM(S): Homo sapiens (Human) 
2026-03-12 | PXD059546 | Pride
Antisense oligo pulldown  rna interactome  lc-ms/ms  label-free quantification 
UnknownMultiple Oligo assisted RNA Pulldown via Hybridization followed by Mass Spectrometry (MORPH-MS) for exploring the RNA-Protein interactions.
Not available
S-EPMC10730167 | biostudies-literature
ProteomicsMaTAR25 RNA Antisense Pulldown and Mass Spectrometry
It has been suggested that lncRNAs can interact with transcriptional regulators/co-factors to form ribonucleoprotein (RNP) complexes to regulate the expression of downstream genes in the cell nucleus. To identify potential interacting proteins of MaTAR25, we used two different paired sets of biotin-...
ORGANISM(S): Mus musculus (Mouse) 
2020-12-23 | PXD017398 | Pride
Breast cancer Mouse Protein interaction Lncrna Biotin-oligos Matar25 
ProteomicsIER3-AS1 interacting proteins by AP-MS
Characterisation IER3-AS1 interacting proteins using chromatin oligo-affinity precipitation (ChOP) followed by mass spectrometry. The HeLa cell lysates was incubated with biotinylated antisense oligonucleotides (ASO), targeting an experimental target antisense long noncoding RNA IER3-AS1 or a contr...
ORGANISM(S): Homo sapiens (Human) 
2022-10-15 | PXD035704 | Pride
Chromatin oligo-affinity precipitation Orbitrap Lncrna Long noncoding rna Ier3-as1 Hnrnpk Lc-ms/ms 
ProteomicsIdentification of RNA-binding protein interactors of duck lncrna (lnc455) using Multiple Oligo-assisted RNA Pulldown with Hybridization followed by Mass Spectrometry (MORPH-MS)
This project used MORPH-MS to identify proteins that interact with a duck lncRNA called lnc455, which is linked to antiviral responses. While lnc455 was predicted to enhance RIG-I/MAVS signaling, its effects appeared to be indirect. Using MORPH-MS, we mapped the lncRNA’s binding partners and uncover...
ORGANISM(S): Gallus gallus (Chicken) 
2026-04-27 | PXD067094 | Pride
Morph-ms Type i ifn Duck Lncrna 
TranscriptomicsRNA sequencing of mouse samples using the Illumina TruSeq® Stranded mRNA technology and the NextSeq500 next generation sequencing system
RNA sequencing analysis was performed on mouse cell samples. Quality control of total RNA samples after RNA isolation with the Agilent Bioanalyzer revealed acceptable RNA quality for 12 out of 30 provided samples. Libraries were successfully prepared from these RNA samples using the Illumina TruSeq®...
ORGANISM(S): Mus musculus 
2021-07-07 | E-MTAB-9353 | biostudies-arrayexpress
Sort   by:  
 Page size