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TranscriptomicsTranscriptome Analysis of Wounding-Induced Root to Shoot Communication in Arabidopsis thaliana.
Comparison of gene expression between shoots of root-wounded seedlings and shoots of control seedlings in Arabidopsis. We identified wounding-induced early (30 min) and late (360 min) root to shoot responsive genes (RtS). Two-condition experiment, shoots of root-wounded seedlings vs. shoots of contr...
ORGANISM(S): Arabidopsis thaliana 
2010-12-31 | E-GEOD-26374 | biostudies-arrayexpress
MetabolomicsMetabolomics study for investigating chronic endoplasmic reticulum stress in Arabidopsis thaliana

The Unfolded Protein Response (UPR) is a retrograde, ER-to-nucleus, signalling pathway which is conserved across kingdoms. In plants, it contributes to development, reproduction, immunity and tolerance to abiotic stress. This metabolomic dataset was produced from 14-day-old Arabidopsis thaliana s...

2024-12-02 | MTBLS10096 | MetaboLights
MetabolomicsPiriformospora indica stimulates root metabolism of Arabidopsis thaliana
Piriformospora indica is a root-colonizing fungus, which interacts with a variety of plants including Arabidopsis thaliana. This interaction has been considered as mutualistic, as it leads to an increased mycelia dry weight and increased shoot fresh weight, respectively. So far, only indolic glucosi...
2016-07-15 | MTBLS341 | MetaboLights
MetabolomicsMetabolomics study for investigating the specific role of INOSITOL-REQUIRING ENZYME 1A and INOSITOL-REQUIRING ENZYME 1B under chronic endoplasmic reticulum stress in Arabidopsis thaliana

The Unfolded Protein Response (UPR) is a retrograde, ER-to-nucleus, signalling pathway which is conserved across kingdoms. In plants, it contributes to development, reproduction, immunity and tolerance to abiotic stress. This metabolomic dataset was produced from 14-day-old Arabidopsis thaliana s...

2024-12-02 | MTBLS10609 | MetaboLights
MetabolomicsArabidopsis thaliana 25 accessions
Not available
ORGANISM(S): Arabidopsis thaliana 
ST001096 | MetabolomicsWorkbench
TranscriptomicsExpression data from WT, MPK6 Overexpression, and mpk6 T-DNA knockout Arabidopsis root and shoot under hypoxic and mock conditions
MPK6 shows transient increase in activity under hypoxia with maximal activity at 2 hrs. To study the role of MPK6 in hypoxia in Arabidopsis, 10 do seedlings of WT, mpk6 and MPK6 plants were exposed to 2 hrs hypoxia and 2hr air (mock). Because there are no major phenotypic differences between the ge...
ORGANISM(S): Arabidopsis thaliana 
2011-12-03 | E-GEOD-31158 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Arabidopsis spl7 identifies two genes required for copper acquisition and a copper dependence of iron homeostasis
The transition metal copper (Cu) is an essential element for all living organisms. In plants, Cu plays key roles in electron transport chains of chloroplasts and mitochondria, as well as in cell wall metabolism, ethylene perception, molybdenum cofactor synthesis and oxidative stress protection. Beca...
ORGANISM(S): Arabidopsis thaliana 
2013-10-14 | E-GEOD-24696 | biostudies-arrayexpress
GenomicsArabidopsis Shoot versus Root transcriptome
Arabidopsis Shoot versus Root transcriptome
PRJNA938935 | ENA
TranscriptomicsThe response and recovery of Arabidopsis thaliana transcriptome to phosphate starvation [ATH1-121501]
Background: Over application of phosphate fertilizers in modern agriculture contaminates waterways and disrupts natural ecosystems. Nevertheless, this is a common practice among farmers, especially in developing countries as abundant fertilizers are believed to boost crop yields. The study of plant ...
ORGANISM(S): Arabidopsis thaliana 
2012-06-17 | E-GEOD-33790 | biostudies-arrayexpress
TranscriptomicsThe response and recovery of Arabidopsis thaliana transcriptome to phosphate starvation [At35b_MR]
Background: Over application of phosphate fertilizers in modern agriculture contaminates waterways and disrupts natural ecosystems. Nevertheless, this is a common practice among farmers, especially in developing countries as abundant fertilizers are believed to boost crop yields. The study of plant ...
ORGANISM(S): Arabidopsis thaliana 
2012-06-17 | E-GEOD-33996 | biostudies-arrayexpress
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