Armand F F - OmicsDI

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Unknown (532)
Proteomics (18)
Transcriptomics (12)
Genomics (4)
Metabolomics (2)

Organisms

Chlamydomonas reinhardtii (17)
Pseudomonas canadensis (17)
Marchantia polymorpha subsp. ruderalis (17)
Methylocystis sp. (17)
Exiguobacterium sp. SH31 (17)
Porites pukoensis (17)
Bothrops insularis (17)
Bothrops jararaca (17)
Bothrops jararacussu (17)
Bothrops cotiara (17)
Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 (17)
Dinosauria (17)
Streptomyces coelicolor (17)
Pseudomonas taiwanensis (17)
Burkholderia ubonensis MSMB22 (17)
Pseudomonas aeruginosa PA103 (17)
Artibeus jamaicensis (17)
Morchella importuna (17)
Clostridium autoethanogenum (17)
Microbacterium ginsengisoli (17)
Streptomyces sp. A494 Ydz-AH (17)
Shewanella oneidensis MR-1 (17)
Thermochaetoides thermophila (17)
Leucocoprinus gongylophorus (17)
Bothrops brazili (17)
Ixodes scapularis (17)
Homo sapiens (8)
Populus tremula x Populus alba (3)
Mus musculus (3)
Arabidopsis thaliana (1)

Organisms

Populus tremula x Populus alba (2)

Repository

pride (17)
biostudies-arrayexpress (15)
MetaboLights (2)
ENA (2)
MassIVE (1)

Tissue

Eosinophil differentiation (1)
Layer of hippocampus (1)
Tenocyte (1)
Macrophage (1)
Feces (1)
Brain (1)
Cell suspension culture (1)
Primary cell (1)
Epithelial cell (1)
Colon (1)
Blood (1)

Disease

Tuberculosis (1)

Technology Type

Mass Spectrometry (17)
Shotgun proteomics (12)
Bottom-up proteomics (3)
Mass spectrometry (2)
DiaPASEF (1)
Gel-based experiment (1)
Data-dependent acquisition (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

ScanArray 4000 [PerkinElmer] (1)
Orbitrap Fusion ETD (1)
Direct infusion MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)

Publication Date

2009 (5)
2022 (4)
2016 (3)
2023 (3)
2025 (3)
2024 (3)
2013 (2)
2011 (2)
2007 (2)
2021 (1)
2006 (1)
2020 (1)
2019 (1)
2018 (1)
2017 (1)
2014 (1)

CHEBI ID

CHEBI:6418 (2)
CHEBI:162647 (1)
CHEBI:161369 (1)
CHEBI:161869 (1)
CHEBI:163638 (1)
CHEBI:164245 (1)
CHEBI:163433 (1)
CHEBI:162782 (1)
CHEBI:162580 (1)
CHEBI:164306 (1)
CHEBI:159357 (1)
CHEBI:164405 (1)
CHEBI:160416 (1)
CHEBI:159031 (1)
CHEBI:163823 (1)
CHEBI:166121 (1)
CHEBI:159955 (1)
CHEBI:159205 (1)
CHEBI:164209 (1)
CHEBI:162680 (1)
CHEBI:166207 (1)
CHEBI:158497 (1)
CHEBI:160858 (1)
CHEBI:163975 (1)
CHEBI:160464 (1)
CHEBI:160954 (1)
CHEBI:160614 (1)
CHEBI:160411 (1)
CHEBI:159011 (1)
CHEBI:161093 (1)

Metabolite Name

Leucyl-leucine (2)
Leu-Lys-Pro (1)
Lys-Val-Asn (1)
Ala-Val-Asp-Pro (1)
Pro-Ser-Ser (1)
Met-Ala-Gly (1)
Thr-Trp-Pro (1)
GammaGlutamylglutamicacid (1)
Glu-Ala-Pro (1)
Cys-Gly-Pro (1)
Val-Asp-His (1)
Thr-Ala-Pro (1)
Lys-Gly-His (1)
Val-Gly-Pro (1)
Carbamoyl-L-aspartate (1)
Leu-Lys-Asp (1)
Boivinide A (1)
K-Strophanthin-beta (1)
Quercetin 3-O-rhamnoside 7-O-glucoside (1)
Guattegaumerine (1)
Isovitexin 2''-O-beta-D-glucoside (1)
Cascaroside B (1)
Glucofrangulin A (1)
Aloinoside A (1)
Cascaroside C (1)
Cascaroside D (1)
Glucofrangulin B (1)
2-O-[6-O-Octanoyl-alpha-D-glucopyranosyl-(1->6)-alpha-D-glucopyranosyl]-D-glycerate (1)
Panogenin-3-o-alpha-L-rhamnopyranoside (1)
Aspecioside (1)

First Public Date

2014 (2)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (9)
ChIP-seq (2)
Genotyping by array (1)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2023 (64)
2021 (56)
2025 (51)
2022 (51)
2020 (39)
2024 (34)
2019 (32)
2018 (29)
2017 (29)
2015 (27)
2016 (23)
2012 (19)
2013 (13)
2009 (13)
2011 (12)
2014 (12)
2026 (9)
2010 (6)
2007 (5)
2006 (5)
2008 (4)
2004 (3)
2005 (2)
2003 (2)
2002 (2)
2001 (2)
1999 (2)
1996 (1)

Lab affiliation

PCF (2)
EPFL SV ISREC UPSIM SV2.1830 Station 19 CH - 1015 Lausanne Switzerland (1)
Physiology and Pharmacology, University of Calgary (1)
Research Manager, TNO, Department CBRN protection, The Netherlands (lab head) (lab head) (1)
Swiss Institute for Experimental Cancer Research (ISREC), Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland (1)
CRBM, CNRS, Univ. Montpellier, F-34000, Montpellier France. Equipe labellisée Ligue Contre le Cancer, CRBM, CNRS, Univ. Montpellier, F-34000, Montpellier France. (1)
Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, École polytechnique fédérale de Lausanne (EPFL), 1015 Lausanne, Switzerland (1)
Institut Necker Enfants Malades (1)
Global Health Institute, School of Life Science, École Polytechnique Fédérale de Lausanne (EPFL), Lausanne, Switzerland (1)
Swiss Institute for Experimental Cancer Research (ISREC), School of Life Sciences, Swiss Federal Institute of Technology (EPFL), Lausanne, Switzerland (1)
Laboratory for Environmental Biotechnology, Ecole polytechnique fédérale de Lausanne (EPFL), Lausanne, Switzerland (1)
Laboratoire de Recherche sur les Produits Sanguins, Transfusion Interrégionale CRS, Epalinges, Switzerland Center for Research and Innovation in Clinical Pharmaceutical Sciences, Institute of Pharmaceutical Sciences of Western Switzerland, University Hospital and University of Lausanne, Lausanne, Switzerland Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva, University of Lausanne, Switzerland (1)
Department of Chemistry, Scripps Research Institute (1)
CEA Grenoble, iRTSV/CBM, Laboratory of Chemistry and Biology of Metals, Grenoble, France (1)
Applied Research Department, LAM Biotechnologies SA, CH-1066 Épalinges, Switzerland Regenerative Therapy Unit, Lausanne University Hospital, University of Lausanne, CH-1066 Épalinges, Switzerland (1)
Georgia Institute of Technology (1)

Tags

xref:PubMed:19674332 (2)

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Integrative analysis of green ash phloem transcripts and proteins during an emerald ash borer infestation

We performed proteomics on naturally infested green ash (F. pennsylvanica) trees at low and high levels of emerald ash borer (A. planipennis) infestation. Our integrative analysis of the RNA-Seq and proteomics data identified 14 proteins and 4 transcripts that contribute most to the difference betw...

ORGANISM(S): Fraxinus Pennsylvanica (ncbitaxon:56036)

MSV000090439 | MassIVE

Transcription profiling of poplar WRKY23 reveals a regulatory role in defense: WRKY23-overexpressor

To investigate the function of poplar WRKY23, we generated PtWRKY23-overexpressing and -underexpressing (RNAi) plants. Transgenic plants were inoculated with Melampsora rust or mock-inoculated for assessment of rust-resistance and for gene expression profiling using the poplar Affymetrix GeneChipÂ® ...

ORGANISM(S): Populus tremula x Populus alba

2009-08-09 | E-GEOD-16417 | biostudies-arrayexpress

Transcription profiling of poplar WRKY23 reveals a regulatory role in defense: WRKY23-RNAi

ORGANISM(S): Populus tremula x Populus alba

2009-08-09 | E-GEOD-16419 | biostudies-arrayexpress

Gene profiling of Hand2 target genes and transcriptional regulation of Hand2 expression in the postnatal myocardium

In humans, cardiac hypertrophy is the principal risk factor for the development of overt heart failure and sudden cardiac death from lethal arrhythmias. Although aberrant reactivation of fetal² gene programs is intricately linked to maladaptive hypertrophy of postnatal cardiomyocytes, loss of cardi...

ORGANISM(S): Mus musculus

2013-11-15 | E-MTAB-1821 | biostudies-arrayexpress

Two-year efficacy and safety of risdiplam in patients with type 2 or non-ambulant type 3 spinal muscular atrophy (SMA).

Not available

S-EPMC9897618 | biostudies-literature

A fatal endocarditis case due to an emerging bacterium: Moraxella nonliquefaciens.

Not available

S-EPMC5328914 | biostudies-literature

Dynamics of extended-spectrum beta-lactamase-producing Enterobacterales colonization in long-term carriers following travel abroad.

Not available

S-EPMC8477403 | biostudies-literature

Collagen XXV promotes myoblast fusion during myogenic differentiation and muscle formation.