Automatic liquid handling

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Proteomics (70)
Unknown (9)
Transcriptomics (8)
Metabolomics (8)
Genomics (3)

Organisms

Aerococcus urinae NBRC 15544 = CCUG 36881 (69)
Andropogon gerardi (69)
Bacteria (69)
Bartonella quintana JK 31 (69)
Canis lupus familiaris (69)
Cnidaria (69)
Ectopseudomonas oleovorans CECT 5344 (69)
Ensifer adhaerens (69)
Halictus scabiosae (69)
Human immunodeficiency virus 1 (69)
Mesocricetus auratus (69)
Miscanthus x giganteus (69)
Mus musculus (69)
Panicum virgatum (69)
Pseudomonas aeruginosa SJTD-1 (69)
Rabies virus Nishigahara RCEH (69)
Rattus norvegicus (69)
Rattus rattus (69)
Rhodococcus jostii RHA1 (69)
Rhodopseudomonas palustris (69)
Schizosaccharomyces pombe 927 (69)
Shigella (69)
Sorghastrum nutans (69)
Homo sapiens (3)
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Oncorhynchus nerka (1)
Oryza sativa (1)
Oncorhynchus mykiss (1)
Saccharomyces cerevisiae (1)
Mus musculus (1)

Organisms

Mus musculus (1)

Repository

pride (69)
biostudies-arrayexpress (10)
MetaboLights (8)
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ENA (1)

Tissue

Cell culture (10)
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Disease

Acute leukemia (2)
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Lymphoma (1)
Melanoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Parkinson's disease (1)
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Sarcoma (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (69)
Shotgun proteomics (31)
Data-dependent acquisition (21)
Bottom-up proteomics (13)
Mass spectrometry (7)
Data-independent acquisition (5)
SWATH MS (4)
HDMSE (3)
NMR spectroscopy (2)
Affinity purification coupled with mass spectrometry proteomics (2)
NMR spectroscopy assay (1)
Mass spectrometry assay (1)
SRM/MRM (1)

Instrument Platform

Nuclear Magnetic Resonance (NMR) - (3)
NextSeq 500 (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
ScanArray Express HT [PerkinElmer] (1)
Illumina HiSeq 3000 (1)
Xevo G2 Q-Tof (1)
LTQ-FT Ultra (Thermo Scientific) (1)
Liquid Chromatography MS (1)
Q Exactive (1)
5975C Series GC/MSD (Agilent) (1)

Publication Date

2025 (24)
2022 (10)
2023 (9)
2024 (9)
2021 (8)
2026 (8)
2020 (4)
2019 (3)
2016 (2)
2014 (2)
2009 (2)
2018 (2)
2012 (1)
2010 (1)
2006 (1)
2015 (1)

CHEBI ID

CHEBI:17268 (3)
CHEBI:18012 (3)
CHEBI:16737 (3)
CHEBI:16919 (3)
CHEBI:15724 (3)
CHEBI:16628 (2)
CHEBI:45969 (2)
CHEBI:17768 (2)
CHEBI:91315 (2)
CHEBI:40521 (2)
CHEBI:70959 (2)
CHEBI:17992 (2)
CHEBI:68465 (2)
CHEBI:26271 (2)
CHEBI:16040 (2)
CHEBI:17126 (2)
CHEBI:27570 (2)
CHEBI:18186 (2)
CHEBI:73685 (2)
CHEBI:15428 (2)
CHEBI:16958 (2)
CHEBI:6650 (2)
CHEBI:28044 (2)
CHEBI:28683 (2)
CHEBI:10072 (2)
CHEBI:30746 (2)
CHEBI:19289 (2)
CHEBI:17196 (2)
CHEBI:17115 (2)
CHEBI:30763 (2)

Metabolite Name

Pipecolate (2)
3-methylhistidine (2)
Histidine (2)
Glutarylcarnitine (2)
Malate (2)
Fumarate (2)
Malonate (2)
Succinate (2)
Lactate (2)
Glycine (2)
Beta-alanine (2)
Myo-inositol (2)
Cytosine (2)
Alanine (2)
Proline (2)
Phenylalanine (2)
5-HYDROXYINDOLEACETIC ACID (1)
MYCOPHENOLIC ACID ACYL-GLUCURONIDE (1)
MYCOPHENOLIC ACID GLUCURONIDE (1)
METHYLGUANIDINE (1)
N-CINNAMOYLGLYCINE (1)
Oxalate (1)
L-alpha-aminoadipate (1)
Glucitol (1)
D-erythrose (1)
Carbamate (1)
Benzenecarboxylate (1)
2,6-dihydroxyphenylacetate (1)
(9Z)-octadecenoic acid (1)
(9E)-octadecenoic acid (1)

First Public Date

2026 (1)

Study type

Transcription profiling by array (5)
Animal - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
ChIP-seq (1)
DNA-seq (1)
RNA-seq of total RNA (1)

Release Date

2021 (3)
2009 (3)
2022 (2)
2016 (1)
2014 (1)
2012 (1)
2010 (1)
2006 (1)
2024 (1)
2023 (1)
2019 (1)
2018 (1)
2015 (1)
2011 (1)

Lab affiliation

iBET – Instituto de Biologia Experimental e Tecnológica, Av. da República, Oeiras, 2780-157, Portugal (14)
Core Unit Proteomics, Berlin Institute of Health at Charite - Universitaetsmedizin Berlin and Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany (2)
1 Chair of Proteomics and Bioanalytics, Technical University of Munich (TUM), Freising, Germany 2 German Cancer Consortium (DKTK), Partner-site Munich and German Cancer Research Center (DKFZ), Heidelberg, Germany 3 Bavarian Biomolecular Mass Spectrometry Center (BayBioMS), Technical University of Munich (TUM), Freising, Germany (1)
1. Victor Chang Cardiac Research Institute, Darlinghurst, NSW, 2010 2. St Vincent’s Hospital, Darlinghurst, NSW, 2010 3. University of New South Wales Sydney, Kensington, NSW, 2052 (1)
1¬ MRM Proteomics Inc, Montreal, Quebec, Canada 2 Segal Cancer Proteomics Centre, Lady Davis Institute, Jewish General Hospital, McGill University, Montreal, Quebec, Canada 3 Gerald Bronfman Department of Oncology, Jewish General Hospital, McGill University, Montreal, Quebec, Canada (1)
Associate Professor and Research Director Department of Ophthalmology and Visual Neuroscience University of Minnesota (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, School of Molecular and Cellular Biology, University of Leeds, Leeds, United Kingdom, LS2 9JT (1)
Astbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (1)
Astbury Centre for Structural Molecular Biology, School of Molecular and Cellular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, United Kingdom (1)
Current: Van 't Hoff Institute for Molecular Sciences, University of Amsterdam, The Netherlands; Previous: Turku Centre for Biotechnology, University of Turku and Åbo Akademi University, Turku, Finland (1)
Dame Kate Campbell Fellow Department of Surgery| Melbourne Medical School Department of Anatomy and Physiology| School of Biomedical Sciences Faculty of Medicine, Dentistry and Health Sciences Medical Building (#181), Grattan Street The University of Melbourne, Victoria 3010 Australia P: +61 3 9035 5464 E: apebay@unimelb.edu.au W: https://medicine.unimelb.edu.au/school-structure/surgery W: https://biomedicalsciences.unimelb.edu.au/departments/anatomy-and-physiology (1)
Depamrtment of Biological Sciences - University of Alberta (1)
Department of Biochemistry and Stanford Cancer Institute, Stanford University School of Medicine (1)
Department of Biological Sciences, University of Alberta (1)
Department of Biological Sciences, University of Alberta, Canada (1)
Department of Comparative Medicine, Laboratory Animal Center, Dalian Medical University, Dalian, Liaoning 116000, P.R. China (1)
Department of Molecular Medicine, Cornell University, Ithaca, NY 14853 Department of Chemistry and Chemical Biology, Cornell University, Ithaca, NY 14853 (1)
Department of Oncology and Pathology, Karolinska Institute; Science for Life Laboratory, Stockholm, Sweden (1)
Department of Oncology-Pathology, Karolinska Institutet (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory (lab head) (1)
Department of Oncology-Pathology, Karolinska Institutet and Science for Life Laboratory, Stockholm, Sweden (1)
Department of Pharmacy, Drug Design and Optimisation, Helmholtz Institute for Pharmaceutical Research Saarland (HIPS), Saarbrücken, Germany (1)
Department of Plant and Microbial Biology, University of Zurich, Switzerland (1)
Department of Proteomics and Signal Transduction, Max-Planck Institute of Biochemistry, Martinsried, Germany (1)
Department of Women and Children’s Health, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden (1)
Department of oncology UNIL CHUV Ludwig Institute for Cancer Research Lausanne Office B25A/04/94 Rue du Bugnon 25a, CH-1005 Lausanne (1)
Dept. Oncology Pathology, Karolinska Institutet, Scilifelab, Stockholm, Sweden (1)
Division of Applied Functional Genomics, German Cancer Research Center (DKFZ) and National Center for Tumor Diseases (NCT), NCT Heidelberg, Germany (1)
Division of Infection Medicine, Department of Clinical Sciences Lund, Faculty of Medicine, Lund University, Klinikgatan 32, SE-22184 Lund, Sweden (1)

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Comparison of performances of automatic versus manual liquid handling in density-based separation of extracellular vesicles from plasma and urine

Extracellular vesicles (EV) in body fluids are extensively studied as potential biomarkers for numerous diseases. Major impediments of EV-based biomarker discovery include the manual labor, and the specificity and reproducibility of EV sample preparation. To tackle this, we present an automated liqu...

ORGANISM(S): Homo sapiens (Human)

2023-05-10 | PXD032394 | Pride

Robotic Handling Preserves Induced Pluripotent Stem Cell Derived Vascular Smooth Muscle Cells Differentiation using a Weekend-free, Automatable, Low-variability, Low-cost (WALL) Protocol

As tissue engineering and high-throughput disease modeling develop further, necessitating large quantities of viable cells, automation will be essential. Robotic liquid handling systems are increasingly employed for generating large quantities of induced pluripotent stem cell (iPSC)-derived cells, w...

ORGANISM(S): Homo sapiens (Human)

2026-09-28 | PXD070184 | Pride

High-throughput Vascular smooth muscle cells Tissue engineering Liquid handling robotics Proteomics Induced pluripotent stem cells Drug screening

Purification of viable peripheral blood mononuclear cells for biobanking using a robotized liquid handling workstation.

Not available

S-EPMC6852781 | biostudies-literature

Transcriptome analysis of gibberellin-signaling mutants in rice

This Series is composed of the following Samples: GSM375647: Taichung 65_shoot_replicate 1 GSM375648: Taichung 65_shoot_replicate 2 GSM375649: Taichung 65_shoot_replicate 3 GSM375765: gid1-3_ shoot_replicate 1 GSM375766: gid1-3_ shoot_replicate 2 GSM375767: gid1-3_ shoot_replicate 3 GSM375769: gid2-...

ORGANISM(S): Oryza sativa

2009-04-21 | E-GEOD-15046 | biostudies-arrayexpress

Metabolic phenotyping of urine from a dementia research cohort

To better understand the molecular mechanisms underpinning physiological variation in human populations, metabolic phenotyping approaches are increasingly being applied to studies involving hundreds and thousands of biofluid samples. Hyphenated ultra-performance liquid chromatography-mass spectromet...

2022-03-01 | MTBLS719 | MetaboLights

Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa.

Not available

S-EPMC2709547 | biostudies-literature

Toxicometabolomics of the new psychoactive substances α-PBP and α-PEP studied in HepaRG cell incubates by means of untargeted metabolomics revealed unexpected amino acid adducts

Toxicometabolomics, essentially applying metabolomics to toxicology of endogenous compounds such as drugs of abuse or new psychoactive substances (NPS), can be investigated by using different in vitro models and dedicated metabolomics techniques to enhance the number of relevant findings. The presen...

2023-10-10 | MTBLS1481 | MetaboLights

Fecal microbiota transplantation plus anti-PD-1 immunotherapy in advanced melanoma: a phase I trial

Fecal microbiota transplantation (FMT) represents a potential strategy to overcome resistance to immune checkpoint inhibitors in patients with refractory melanoma; however, the role of FMT in first-line treatment settings has not been evaluated. We conducted a multicenter phase I trial combining ...

2025-02-27 | MTBLS711 | MetaboLights

A linear programming-based strategy to save pipette tips in automated DNA assembly.

Not available

S-EPMC9074407 | biostudies-literature

Automated Buildup of Biomimetic Films in Cell Culture Microplates for High-Throughput Screening of Cellular Behaviors.

Not available

S-EPMC6701983 | biostudies-literature

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98 Results

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