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TranscriptomicsDevelopmental stage specific metabolic and transcriptional activity of chlamydial elementary bodies and reticulate bodies in an axenic medium
Chlamydia trachomatis is a significant human pathogen yet their obligate intracellular nature severe restrictions upon research. Chlamydiae undergo a complex developmental cycle characterized by an infectious cell type known as the elementary body (EB) and an intracellular active replicative form ...
ORGANISM(S): Chlamydia trachomatis 
2012-11-20 | E-GEOD-39530 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of Dictyostelium discoideum grown for a short time or exponentially on axenic culture medium or bacteria
Dictyostelium amoebae feed on bacteria, which are taken up by phagocytosis. Using DNA microarrays we have investigated gene expression during phagocytosis of Dictyostelium cells incubated with Escherichia coli. The gene expression profiles of cells incubated for a short time with bacteria were compa...
ORGANISM(S): Dictyostelium discoideum 
2009-01-31 | E-TABM-415 | biostudies-arrayexpress
TranscriptomicsDevelopmental transitions of Coxiella burnetii grown in axenic media
Coxiella burnetii undergoes a biphasic developmental cycle within its host cell that generates morphologically and physiologically distinct large cell variants (LCV) and small cell variants (SCV). During the lag phase of the C. burnetii growth cycle, non-replicating SCV differentiate into replicati...
ORGANISM(S): Coxiella burnetii 
2013-12-02 | E-GEOD-51135 | biostudies-arrayexpress
TranscriptomicsGene expression analysis of late exponential vs. stationary phase cultures using a custom designed Pseudo-nitzschia multiseries (Ps-n) cDNA microarray
Pseudo-nitzschia multiseries (Ps-n) is a toxigenic marine diatom that produces the neurotoxin, domoic acid. We screened for candidate genes that may be involved in domoic acid production by determining changes in transcript profiles in Ps-n cultures that were in late exponential (low-domoic-acid-pro...
ORGANISM(S): Pseudo-nitzschia multiseries 
2013-09-08 | E-GEOD-46845 | biostudies-arrayexpress
TranscriptomicsWhole-genome comparative RNA expression profiling of axenic and intracellular amastigote forms of Leishmania infantum
Transcriptional analysis of L. infantum promastigote compared to L. infantum intracellular amastigote and transcriptional analysis of L. infantum promastigote compared to L. infantum axenic amastigote. The full-genome DNA microarrays includes one 70-oligonucleotides probe for each gene of L.infantum...
ORGANISM(S): Leishmania infantum 
2010-05-14 | E-GEOD-13983 | biostudies-arrayexpress
ProteomicsQuantitative proteome profiling of Coxiella burnetii reveals major metabolic and stress differences under axenic and cell culture cultivation – proteome dataset
Coxiella burnetii, a category B select agent, is endemic worldwide, except New Zealand. It causes annually several outbreaks of the zoonotic disease Q fever predominantly in small ruminants. To date, the lipopolysaccharide (LPS), besides a type IV secretion system (T4SS), is the only defined and cha...
ORGANISM(S): Coxiella burnetii Mus musculus (Mouse) Coxiella burnetii RSA 493 
2019-10-24 | PXD013224 | Pride
Lipopolysaccharide Type iv secretion system Q-exactive Dot/icm Stress response Axenic culture Metabolic activity Quantitative proteomics Coxiella burnetii 
UnknownIsolation of axenic cyanobacterium and the promoting effect of associated bacterium on axenic cyanobacterium.
Not available
S-EPMC7708224 | biostudies-literature
GenomicsLeishmania donovani strain:MHOM/SD/62/1S | isolate:R
Axenic differentiation of Leishmania donovani in lysosome-like medium
PRJNA1323046 | ENA
UnknownDevelopmental stage-specific metabolic and transcriptional activity of Chlamydia trachomatis in an axenic medium.
Not available
S-EPMC3511728 | biostudies-literature
ProteomicsLC-MSMS in axenically cultured C. elegans
Dietary restriction (DR) is a well-established method for extending lifespan across various species, including C. elegans. Among the different DR regimens, axenic dietary restriction (ADR), in which worms are grown in a nutrient-rich sterile liquid medium, yields the most powerful lifespan extension...
ORGANISM(S): Caenorhabditis elegans 
2025-07-21 | PXD053074 | Pride
C. elegans Dieatry restriction 
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