B. pertussis tohama i

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Transcriptomics (24)
Unknown (21)
Proteomics (21)
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Andropogon gerardi (19)
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Canis lupus familiaris (19)
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Bordetella pertussis (15)
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Bordetella pertussis Tohama I (1)

Organisms

Bordetella pertussis (4)
Bordetella pertussis Tohama I (3)
Mus musculus (1)

Repository

biostudies-arrayexpress (22)
pride (19)
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Primary cell (1)

Disease

Pertussis (3)
Bordetella parapertussis whooping cough (2)
Diphtheria (1)
Tetanus (1)

Technology Type

Mass Spectrometry (19)
Shotgun proteomics (12)
Bottom-up proteomics (4)
Data-independent acquisition (3)
NMR spectroscopy (1)
Mass spectrometry (1)
All-ion fragmentation (1)
Top-down proteomics (1)

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Scanning hardware (11)
GenePix 4000B [Axon Instruments] (1)
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2006 (11)
2011 (5)
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2020 (3)
2010 (2)
2009 (2)
2016 (2)
2015 (2)
2024 (2)
2019 (2)
2012 (1)
2008 (1)
2005 (1)
2017 (1)
2007 (1)

UNIPROT ID/AC

ACCA_BORPE (2)
ACP_BORPE (2)
AMPA_BORPE (2)
APT_BORPE (2)
ARGB_BORPE (2)
ARGC_BORPE (2)
ARGD1_BORPE (2)
ARGD2_BORPE (2)
ARGJ_BORPE (2)
ARLY_BORPE (2)
AROC_BORPE (2)
AROQ_BORPE (2)
ASSY_BORPE (2)
ATPA_BORPE (2)
ATPB_BORPE (2)
ATPD_BORPE (2)
ATPF_BORPE (2)
ATPG_BORPE (2)
BAMB_BORPE (2)
BFRD_BORPE (2)
BRKA_BORPE (2)
BVGA_BORPE (2)
BVGS_BORPE (2)
CATA_BORPE (2)
CH10_BORPE (2)
CH60_BORPE (2)
CLPB_BORPE (2)
CLPP_BORPE (2)
CLPX_BORPE (2)
COAD_BORPE (2)

CHEBI ID

CHEBI:17790 (1)
CHEBI:22652 (1)
CHEBI:16016 (1)
CHEBI:30751 (1)
CHEBI:16236 (1)
CHEBI:17824 (1)
CHEBI:16135 (1)
CHEBI:15344 (1)
CHEBI:17172 (1)
CHEBI:17748 (1)
CHEBI:27266 (1)
CHEBI:15428 (1)
CHEBI:16856 (1)
CHEBI:22660 (1)
CHEBI:16449 (1)
CHEBI:25017 (1)
CHEBI:24898 (1)
CHEBI:15940 (1)
CHEBI:22653 (1)
CHEBI:16040 (1)
CHEBI:16811 (1)
CHEBI:27570 (1)
CHEBI:26986 (1)
CHEBI:29016 (1)
CHEBI:33508 (1)
CHEBI:28300 (1)
CHEBI:15741 (1)
CHEBI:25094 (1)
CHEBI:17822 (1)
CHEBI:26271 (1)

First Public Date

2020 (3)
2014 (3)
2023 (2)
2021 (2)
2026 (1)
2024 (1)
2017 (1)
2013 (1)

Classification

bacteria (7)

Study type

Transcription profiling by array (14)
Comparative genomic hybridization by array (7)
ChIP-chip by array (1)

Release Date

2006 (11)
2011 (5)
2008 (3)
2021 (3)
2018 (3)
2017 (3)
2010 (2)
2009 (2)
2024 (2)
2020 (2)
2015 (2)
2012 (1)
2005 (1)
2013 (1)
2007 (1)
2002 (1)

Lab affiliation

University Medicine Greifswald (3)
Academy of Sciences of the Czech Republic Institute of Microbiology, v.v.i. Prague, Czech Republic (1)
CSO, Bioaster, France (1)
Czech Academy of Sciences Institute of Microbiology Laboratory of Post-Transcriptional Control of Gene Expression (1)
Department Biologie, Professur für Mikrobiologie (lab head) (1)
Department of Functional Genomics, Institute for Genetics and Functional Genomics, University Medicine Greifswald, Germany (1)
Institute of Biomedicine University of Turku Kiinamyllynkatu 10 FI-20520 TURKU Finland (1)
Institute of Microbiology of the CAS, v. v. i. (1)
Laboratory of Infection Biology, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Laboratory of Molecular Biology of Bacterial Pathogens, Institute of Microbiology of the Czech Academy of Sciences, Prague, Czech Republic (1)
Laboratory of Post-Transcriptional Control of Gene Expression Institute of Microbiology, v.v.i. Academy of Sciences of the Czech Republic Videnska 1083; Prague; Czech Republic Tel: +420 296 442 507 (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, Czech Republic (1)
Laboratory of Post-Transcriptional Control of Gene Expression, Institute of Microbiology of the Czech Academy of Sciences, v.v.i. (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales (1)
School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, New South Wales, Australia (1)
University Medicine Greifswald, Germany (1)
ZIK-FunGene Junior Research Group Applied Proteomics, University Medicine Greifswald, Greifswald, Germany (1)

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Bordetella pertussis Tohama I iron limitation 1

B. pertussis Tohama I was grown in iron-depleted or iron-replete media and sampled at several time points to assess global gene expression

ORGANISM(S): Bordetella pertussis

2011-09-08 | E-MEXP-3263 | biostudies-arrayexpress

Proteins of outer membrane vesicles of Bordetella pertussis

proteome analysis OMV extracted from B. pertussis Tohama I wildtype

ORGANISM(S): Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

2023-05-03 | PXD033489 | Pride

Differences in the genomic content of Bordetella pertussis strains before and after vaccine introduction in European countries

Resurgence of pertussis has been observed in many countries with high vaccination coverage and clonal expansion of certain Bordetella pertussis strains has been associated with recent epidemics in Europe. It is known that vaccinations have selected strains which are different from those used for vac...

ORGANISM(S): Bordetella pertussis

2011-10-03 | E-GEOD-29579 | biostudies-arrayexpress

Bordetella pertussis Tohama I

Bordetella pertussis Tohama I Longitudinal Transcriptome

PRJNA866109 | ENA

Deep longitudinal multi-omics analysis of Bordetella pertussis cultivated in bioreactors highlights medium starvations and transitory metabolisms, associated to vaccine antigen biosynthesis variations and global virulence regulation

Bordetella pertussis is the bacterial causative agent of whooping cough, a serious respiratory illness. An extensive knowledge on its virulence regulation and metabolism is a key factor to ensure pertussis vaccine manufacturing process robustness. The aim of this study was to refine our ...

2023-02-21 | MTBLS5762 | MetaboLights

Bordetella pertussis strain:Tohama I-derived mutant

Genome sequencing of the Bordetella pertussis Tohama I -derived mutant strain

PRJNA628583 | ENA

Shotgun proteomic analysis of Bordetella pertussis response to iron availability

B. pertussis Tohama I was cultivated in iron-depleted or iron-repleted medium in order to monitor proteins which are influence by iron supply. More than 200 proteins displayed increased or decreased levels. Proteins involved in iron acquisition, biofilm production and oxidative stress response were ...

ORGANISM(S): Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

2015-03-16 | PXD001280 | Pride

Shotgun proteomics Iron limitation B. pertussis

Proteome data of a BP1092 mutant of Bordetella pertussis

Proteome data of a BP1092 mutant of Bordetella pertussis under virulence modulating and non-modulating conditions

ORGANISM(S): Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

2024-05-24 | PXD041940 | Pride

Proteomics Bp1092 Bordetella pertussis Virulence factors

Proteomic profiling reveals the role of RisR in Bordetella pertussis pathogenesis

This study aims at characterizing the RisR regulon under non-modulating (virulent, Bvg+) and modulating (avirulent, Bvg-) conditions. We here used comparative proteomics to elucidate the functional significance of RisR in B. pertussis Tohama I by defining RisR-dependent protein synthesis.

ORGANISM(S): Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

2025-10-13 | PXD064956 | Pride

Risr Bvgas Virulence-activated genes Ttwo-component systems Bordetella pertussis Virulence-repressed genes Risa Risk.

Comparative genomic hybridization of Bordetella pertussis clinical isoltates circultating in Senegal

Genomic content of Bordetella pertussis clinical isolates circulating in Senegal

ORGANISM(S): Bordetella pertussis

2009-01-08 | E-MEXP-1674 | biostudies-arrayexpress

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