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TranscriptomicsExpression analysis of sporulating Bacillus subtilis strain 168 deleted for prpE gene
Investigation of whole genome gene expression level changes in sporulating Bacillus subtilis 168 delta-prpE mutant, compared to the wild-type strain. The mutation engineered into this strain results in impaired germination of spores. A six chip study using total RNA extracted from three separate wi...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2013-07-08 | E-GEOD-44125 | biostudies-arrayexpress
TranscriptomicsComparison of Bacillus subtilis wild type and cshA mutant at exponential versus stationary phase
Comparison of Bacillus subtilis wild type and cshA mutant at exponential versus stationary phase. Detailed description (other than provided below) of growth conditions, RNA preparation, cDNA synthesis and hybridization conditions can be found in the submitted paper. Bacillus subtilis 168 wild type ...
ORGANISM(S): Bacillus subtilis 
2012-11-26 | E-GEOD-36877 | biostudies-arrayexpress
TranscriptomicsThe YmdB phosphodiesterase is a global regulator of biofilm-specific mRNA levels in Bacillus subtilis
Detailed description (other than provided below) of growth conditions, RNA preparation, cDNA synthesis and hybridization conditions can be found in the submitted paper. GSM956794-GSM956801: Bacillus subtilis 168 wild type and its ymdB derivative strain were grown in CSE-Glu medium and cells were ha...
ORGANISM(S): Bacillus subtilis 
2013-12-11 | E-GEOD-39142 | biostudies-arrayexpress
Proteomicsthe quantitative proteome of B. subtilis strain 168 and its RapP-overexpressing strain
This project is about the proteomes of 168 and its RapP-overexpressing strain
ORGANISM(S): Bacillus subtilis 
2024-11-02 | PXD053195 | Pride
Rapp overexpression B. subtilis strain 168 
TranscriptomicsRNA-seq of Bacillus subtilis (i) sigI-rsgI knock-out strain, (ii) rsgI disrupted strain, and (iii) wt strains during growth at 52°C and 37°C
The aim of the experiments was to determine the regulon of the Bacillus subtilis alternative sigma factor SigI. Biological relevance: To expand our knowledge about Bacillus subtilis transcriptional network under unfavorable conditions. Experimental workflow overview: Bacillus subtilis 168 trp+ (BaS...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2018-06-26 | E-MTAB-6314 | biostudies-arrayexpress
TranscriptomicsBacillus subtilis 168, WT vs. ΔMWX, WT vs. Δ7ECF, Δ7ECF vs. ΔMWX.
Bacillus subtilis encodes seven extracytoplasmic function (ECF) sigma factors. Three (sigma M, sigma W and simga X) mediate responses to cell envelope active antibiotics. The functions of sigma Y, sigma Z, sigma V, and YlaC remain largely unknown, and strong inducers of these sigma factors and their...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2010-07-21 | E-GEOD-22930 | biostudies-arrayexpress
TranscriptomicsTranscriptome profiles of a riboflavin-producing B.subtilis RH33 and wild type B.subtilis 168
The transcriptome profiles of a riboflavin-producing recombinant Bacillus subtilis RH33 and wild type Bacillus subtilis 168 were compared using DNA microarrays to identify the target genes for further enhancing riboflavin production. Transcriptome profiles of a riboflavin-producing B. subtilis RH33 ...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2010-05-05 | E-GEOD-12873 | biostudies-arrayexpress
TranscriptomicsRNA-seq of Bacillus subtilis wild type and RNase J1 null strains
RNase J1 is the first nuclease with 5-3 exonuclease activity in bacteria and plays an important role in the maturation and degradation of mRNA. Absence of RNase J1 in cells has effect on cell morphology and growth rate. We did RNA-seq of Bacillus subtilis wild type and RNase J1 null strains (triplic...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2019-12-31 | E-MTAB-5660 | biostudies-arrayexpress
TranscriptomicsThe condition-dependent transcriptome of Bacillus subtilis 168
Recent studies revealed the unsuspected complexity of the bacterial transcriptome but its systematic analysis across many diverse conditions remains a challenge. Here we report the condition-dependent transcriptome of the prototype strain B. subtilis 168 across 104 conditions reflecting the bacteriu...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2012-03-07 | E-GEOD-27219 | biostudies-arrayexpress
TranscriptomicsTracking the elusive function of Bacillus subtilis Hfq (NimbleGen)
Transcriptomic analysis of Bacillus subtilis hfq mutant in exponential phase of growth. Wild-type strain and hfq mutant cells in exponentially growth phase were subjected to tiling array gene expression analysis. RNA-binding protein Hfq is a key component of the adaptive responses of many proteobact...
ORGANISM(S): Bacillus subtilis subsp. subtilis str. 168 
2015-06-22 | E-GEOD-66891 | biostudies-arrayexpress
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