B6 - OmicsDI

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Transcriptomics (2906)
Unknown (2709)
Genomics (1715)
Proteomics (119)
Metabolomics (96)
Other (17)
Methylation profiling (11)
Clinical (3)
Genomic (2)
Models (1)

Organisms

Mus musculus (2916)
Homo sapiens (74)
Arabidopsis thaliana (33)
Rattus norvegicus (16)
Sus scrofa (10)
Geobacter sulfurreducens (8)
Drosophila melanogaster (6)
Helicobacter pylori (6)
Bacteroides thetaiotaomicron (6)
Corynebacterium glutamicum (4)
Hordeum vulgare (4)
Oncorhynchus mykiss (4)
Synechocystis sp. PCC 6803 (4)
Caenorhabditis elegans (4)
Saccharomyces cerevisiae (4)
Mus musculus domesticus (3)
Streptococcus pneumoniae (3)
Mycobacterium tuberculosis (3)
Gluconobacter oxydans 621H (2)
Chlamydomonas reinhardtii (2)
mouse gut metagenome (2)
Zea mays (2)
Pseudomonas putida (2)
Glycine max (2)
Pseudomonas aeruginosa (2)
Corynebacterium glutamicum ATCC 13032 (2)
Candida albicans (2)
Coccidioides posadasii (1)
Geobacter sulfurreducens KN400 (1)
Pseudoalteromonas sp. A2 (1)

Organisms

Mus musculus (1135)
Homo sapiens (22)
marine metagenome (14)
mouse gut metagenome (9)
Mus (5)
Panicum virgatum (5)
Sus scrofa (4)
Mus musculus musculus (4)
Pseudomonas putida B6-2 (3)
Bacillus velezensis (3)
Agrobacterium tumefaciens str. B6 (2)
Geobacter sulfurreducens (2)
Ewingella americana (2)
Burkholderia cenocepacia (2)
Plasmodium falciparum (2)
Brachypodium distachyon (2)
mouse metagenome (2)
Bacteroides thetaiotaomicron (2)
Oncorhynchus mykiss (2)
Mus musculus domesticus (2)
Arabidopsis thaliana (2)
Halomonas zincidurans B6 (1)
Arthrobacter sp. B6 (1)
Rhodobacter capsulatus B6 (1)
Cellulomonas sp. B6 (1)
Bacillus sp. B6(2022) (1)
Kaistia dalseonensis (1)
Acetobacter oryzoeni (1)
Pseudomonas asplenii (1)
Klebsiella ornithinolytica B6 (1)

Repository

biostudies-arrayexpress (2383)
ENA (1485)
geo (783)
MetaboLights (63)
pride (63)
MetabolomicsWorkbench (33)
MassIVE (27)
iProX (8)
jPOST (7)
EGA (5)
ExpressionAtlas (4)
GPMDB (3)
PAXDB (3)
dbGaP (2)
EVA (1)
FAIRDOMHub (1)
PanoramaPublic (1)

Tissue

Spleen (9)
Cell culture (9)
Feces (6)
Blood (6)
Liver (6)
Brain (4)
Dendritic cell (4)
Liver (3)
Fibroblast (3)
Permanent cell line cell (3)
T cell (3)
Fibroblast cells (2)
Plant (2)
Urine (2)
Adipose tissue (2)
Embryonic stem cell (2)
Plant cell (2)
Blood serum (2)
Hepatopancreas (1)
Food (1)
Ovarian cancer cells (1)
Date palm fruit (1)
Water (1)
Breast milk (1)
Bone marrow (1)
Unspecified (1)
Intestine (1)
Cecum (1)
Cerebrospinal fluid (1)
Cultured cells (1)

Disease

Normal (5)
Obesity (4)
Not Available (3)
Cancer (3)
Lupus (2)
4T1 tumor-bearing (1)
Aggressive insulitis (1)
Nondiabetic (1)
Inflammatory bowel disease (1)
P. berghei ANKA GFP sporozoite's infection (1)
Specific-pathogen free (SPF) (1)
Autoimmune disorder (1)
Sham infected (1)
Folate deficiency (1)
Cardiac defects (1)
Healthy (1)
Germ-free (1)
Fibrosis (1)
Rheumatoid arthritis (1)
SS2-infected (1)
Non-diabetic (1)
Cerebral malaria (1)
Infected with Leishmania amazonensis (1)
Fibrosis (1)
Murine hereditary hemochromatosis (1)
Collagen induced arthritis (1)
Type 1 diabetes mellitus (DM-1) (1)
Pulmonary nodules, extra-pulmonary malignancies, diabetes, chronic kidney disease, inflammatory bowel disease (1)
Breast Neoplasms (1)
Colorectal cancer (1)

Technology Type

Mass Spectrometry (96)
Mass spectrometry (44)
ESI (31)
Shotgun proteomics (30)
Mass spectrometry assay (17)
Affinity purification coupled with mass spectrometry proteomics (13)
Bottom-up proteomics (10)
Data-dependent acquisition (8)
Gel-based experiment (7)
Top-down proteomics (5)
NMR spectroscopy (3)
EI (3)
SWATH MS (2)
Data-independent acquisition (2)
Unspecified (1)
Metaproteomics (1)
All-ion fragmentation (1)
SRM/MRM (1)

Instrument Platform

Illumina NovaSeq 6000 (64)
NextSeq 500 (53)
Illumina HiSeq 2500 (49)
Illumina HiSeq 4000 (46)
Illumina HiSeq 2000 (25)
Illumina MiSeq (9)
NextSeq 2000 (8)
NextSeq 550 (8)
Illumina NovaSeq X (6)
Illumina HiSeq 1500 (5)
HiSeq X Ten (4)
Affymetrix GeneChip Scanner 3000 7G (3)
Agilent 2100 Bioanalyzer (3)
Ion Torrent Proton (3)
DNBSEQ-G400 (3)
Compute Cluster (2)
GeneChip Instrument System (2)
Affymetrix mouse gene 1.0 ST arrays (2)
FACS Aria 3 (2)
FUJIFILM BAS-5000 scanning hardware (2)
GeneChip Scanner 3000 7G (2)
GenePix 4000A [Axon Instruments] (2)
Illumina Genome Analyzer IIx (2)
DNBSEQ-T7 (2)
Illumina HiSeq 3000 (2)
NanoString nCounter (1)
TruSeq stranded Total RNA kit (1)
CellRanger v2.1.0 (1)
NEBNext rRNA Depletion Kit v2 and NEBNext Ultra II Directional RNA Library Prep Kit Illumina kits (1)
BD FACSAria™ III (1)

Publication Date

2026 (361)
2013 (352)
2014 (301)
2015 (296)
2012 (291)
2010 (216)
2011 (205)
2016 (188)
2023 (123)
2008 (118)
2009 (114)
2021 (95)
2020 (89)
2018 (88)
2022 (86)
2025 (83)
2024 (79)
2007 (71)
2019 (70)
2017 (55)
2006 (24)
2005 (22)
2004 (6)
2003 (5)
2002 (1)
2027 (1)

UNIPROT ID/AC

A0A225U917_RAOOR (3)
A0A1Y6GAS6_RAOOR (3)
A0A225UB54_RAOOR (3)
A0A1Y6GMU1_RAOOR (3)
A0A1Y6GN61_RAOOR (3)
A0A1Y6GUV8_RAOOR (3)
A0A225U7T9_RAOOR (3)
A0A1Y6GPL7_RAOOR (3)
A0A225U3P9_RAOOR (3)
A0A225U4B5_RAOOR (3)
A0A1Y6GQH6_RAOOR (3)
A0A225U5R9_RAOOR (3)
A0A1Y6GJ21_RAOOR (3)
A0A225U2J8_RAOOR (3)
A0A1Y6GFI0_RAOOR (3)
A0A1Y6GLY2_RAOOR (3)
A0A225U0H9_RAOOR (3)
A0A1Y6GFS3_RAOOR (3)
A0A1Y6GFB8_RAOOR (3)
A0A1Y6GPS0_RAOOR (3)
A0A1Y6GKS2_RAOOR (3)
A0A1Y6GL42_RAOOR (3)
A0A225U6D5_RAOOR (3)
A0A1Y6GST8_RAOOR (3)
A0A1Y6GIQ2_RAOOR (3)
A0A225U2J9_RAOOR (3)
A0A1Y6GFS4_RAOOR (3)
A0A1Y6GDG1_RAOOR (3)
A0A1Y6GQR8_RAOOR (3)
A0A225U5H7_RAOOR (3)

CHEBI ID

CHEBI:15741 (18)
CHEBI:16704 (16)
CHEBI:17596 (15)
CHEBI:30915 (15)
CHEBI:18012 (14)
CHEBI:30769 (14)
CHEBI:17368 (14)
CHEBI:16708 (14)
CHEBI:17568 (13)
CHEBI:16919 (13)
CHEBI:17154 (13)
CHEBI:15891 (12)
CHEBI:16027 (12)
CHEBI:27897 (12)
CHEBI:15428 (12)
CHEBI:6650 (12)
CHEBI:16737 (12)
CHEBI:17895 (11)
CHEBI:16359 (11)
CHEBI:17821 (11)
CHEBI:7916 (11)
CHEBI:15354 (11)
CHEBI:15676 (11)
CHEBI:16750 (11)
CHEBI:16449 (11)
CHEBI:16811 (11)
CHEBI:28044 (11)
CHEBI:10072 (10)
CHEBI:30832 (10)
CHEBI:27248 (10)

Metabolite Name

Cytosine (14)
Uridine (14)
Uracil (13)
Hypoxanthine (13)
Creatinine (13)
Creatine (13)
L-Histidine (13)
Thymine (12)
Oleamide (12)
Adenosine (12)
Adenine (12)
Taurine (12)
L-Valine (12)
Inosine (12)
L-Tyrosine (11)
Nicotinamide (11)
Pyridoxine (11)
Sarcosine (11)
Riboflavin (11)
Guanine (11)
Choline (11)
L-Lysine (11)
Diethanolamine (10)
4-Hydroxybenzaldehyde (10)
Pyridoxal (10)
L-Proline (10)
Xanthine (10)
Thymidine (10)
Betaine (9)
Genistein (9)

First Public Date

2014 (248)
2024 (182)
2025 (158)
2023 (141)
2026 (124)
2021 (116)
2020 (110)
2022 (103)
2019 (75)
2018 (63)
2017 (58)
2016 (39)
2015 (39)
2013 (28)
2012 (1)

Classification

bacteria (26)
protozoa (2)
fungi (1)

Modification

Not available (1)

Study status

Not provided (1)
Not yet recruiting (1)
Completed (1)

Study type

Transcription profiling by array (1596)
RNA-seq of coding RNA (310)
ChIP-seq (143)
RNA-seq of coding RNA from single cells (65)
Unknown experiment type (22)
Other (21)
Methylation profiling by high throughput sequencing (21)
Comparative genomic hybridization by array (19)
Transcription profiling by RT-PCR (17)
Methylation profiling by array (17)
DNA-seq (15)
RNA-seq of non coding RNA (15)
RNA-seq of total RNA (14)
Animal - High-throughput sequencing (13)
MicroRNA profiling by array (13)
Animal - One-color microarray (11)
Transcription profiling by SAGE (9)
Proteomic profiling by array (7)
ChIP-chip by tiling array (6)
Cell line - High-throughput sequencing (6)
ChIP-chip by array (6)
Differential (5)
Baseline (4)
Animal - Single-cell sequencing (4)
High-throughput sequencing (2)
Spatial transcriptomics by high-throughput sequencing (2)
ATAC-seq (2)
CUT&RUN (2)
Cell line - Single-cell sequencing (1)
One-color microarray (1)

Release Date

2013 (424)
2014 (389)
2015 (358)
2012 (337)
2023 (314)
2022 (294)
2016 (288)
2020 (265)
2024 (264)
2021 (261)
2010 (255)
2025 (249)
2011 (233)
2019 (224)
2018 (190)
2017 (179)
2009 (160)
2008 (153)
2007 (78)
2026 (59)
2006 (42)
2005 (23)
2004 (16)
2003 (10)
2002 (6)
2001 (5)
1997 (5)
1998 (4)
2000 (3)
1999 (2)

Lab affiliation

Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, 2200 Copenhagen, Denmark (3)
Proteomics program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Blegdamsvej 3B, 2200 Copenhagen, Denmark (3)
Instituto de Parasitología y Biomedicina "López - Neyra", CSIC Departamento de Biología Celular e Inmunología Parque Tecnológico de Ciencias de la Salud, Avda. del Conocimiento, s/n 18016, Granada-Spain (2)
Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, Rhode Island, USA (2)
Chair of Organic Chemistry II Department of Chemistry Technical University Munich 85748 Garching (1)
Otto-von-Guericke-University / Max Planck Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany (1)
Scripps Research Institute (1)
Molecular Pharmacology, ETH Zurich, Switzerland (1)
Instituto de Agrobiotecnología y Biología Molecular (IABIMO), Instituto Nacional de Tecnología Agropecuaria (INTA), Consejo Nacional de Investigaciones Científicas y Técnicas (CONICET), De los Reseros y N. Repetto s/n, Hurlingham B1686IGC, Buenos Aires, Argentina. (1)
Head, T cell Lab La Trobe Institute for Molecular Science, La Trobe University 1 Kingsbury Drive, Bundoora, Vic 3086 Australia (1)
Department of Cellular Biology and Immunology, Lab 201, IPBLN-CSIC, Granada, Spain. (1)
Wellcome Trust Centre for Cell-Matrix Research, Faculty of Life Sciences and Institute of Human Development, Faculty of Medical and Human Sciences, University of Manchester, Manchester, UK (1)
Gade Research Group for Infection and Immunity Dept. of Clinical Science, University of Bergen The Laboratory Building, 5th floor N-5021 Bergen, Norway (1)
Otto-von-Guericke University Magdeburg (1)
Department of Chemical and Biological Engineering, Tufts University; Medford, MA 02155, USA Artie McFerrin Department of Chemical Engineering, Texas A&M University; College Station, TX 77843, USA, Department of Microbial Pathogenesis and Immunology, College of Medicine, Texas Health Science Center, Texas A&M University; Bryan, TX, USA (1)
Tata Institute of Fundamental Research, Hyderabad, India. (1)
Washington University (1)
Institut Pasteur - CNRS USR 2000 Mass Spectrometry for Biology Unit 28, rue du Dr. Roux 75 015 Paris (1)
Englander Institute of Precision Medicine Professor Radiation Oncology Professor Physiology and Biophysics Weill Cornell Medicine 1300 York Avenue Room E215 New York, NY 10065 tel 646-962-2160 (1)
High-Throughput Biological Sciences, Department of Chembical Biology & Therapeutics, St. Jude Children's Research Hospital (1)
School of Biological Sciences, Victoria University of Wellington, Wellington, New Zealand (1)
Instituto de Parasitología y Biomedicina "López - Neyra", CSIC Departamento de Biología Celular e Inmunología Parque Tecnológico de Ciencias de la Salud, Avda. del Conocimiento, s/n 18016, Granada-Spain (1)
Analytical Chemistry Department, University of Barcelona (1)
Babraham Institute, Cambridge, CB22 3AT, UK (1)
Harvard Medical School Cell Biology Boston, MA, USA (1)
Department of Biology, University of North Dakota, Grand Forks, ND 58202, USA. (1)
- Departamento de Imunologia, Instituto de Ciências Biomédicas, Universidade de São Paulo, São Paulo, Brazil (1)
Wayne State University, School of Medicine, Opthalmology Visual Anatoical Sci, Detroit, MI, USA (1)
Centre for Animal Science, Queensland Alliance for Agriculture and Food Innovation, The University of Queensland, Australia (1)
Department of Proteomics, Helmholtz Centre for Environmental Research - UFZ, Permoserstrasse 15, 04318 Leipzig, Germany (1)

Location

United Kingdom (1)
China (1)
Japan (1)

Keyword

Pyridoxine (1)
Vitamin B 6 (1)
Male breast cancer (1)
Rectal cancer (1)

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Gene expression data from teratomas formed by C57BL/6 (B6) ES and EiPS cells in B6 mice

Embryonic fibroblast from C57BL/6 (B6) mice were reprogrammed to EiPS without exogenous DNA integration using an single episomal vector. The EiPS cells and B6 ES cells were then transplanted into B6 mice to form teratomas. We used microarrays to profile the gene expression differences between the te...

ORGANISM(S): Mus musculus

2011-04-13 | E-GEOD-28573 | biostudies-arrayexpress

Arthrobacter sp. B6 strain:B6 | isolate:B6

Draft genome sequence of Arthrobacter sp. strain B6

PRJNA306410 | ENA

Cellulomonas sp. B6 strain:B6

Cellulomonas sp. B6 strain:B6 Genome sequencing and assembly

PRJNA303168 | ENA

Identification of candidate susceptibility and resistance genes of mice infected with Streptococcus suis type 2

There were four groups:control A/J mice;control B6 mice;SS2-infected A/J mice;SS2-infected B6 mice.The RNA samples of four groups were sent to Biostar Genechip Inc. (Shanghai, China) for microarray hybridization. The pooled RNA sample from each group was hybridized to one Illumina mouse Genome Beadc...

ORGANISM(S): Mus Musculus

2012-02-09 | E-MTAB-745 | biostudies-arrayexpress

Agrobacterium tumefaciens str. B6

Agrobacterium tumefaciens str. B6 Genome sequencing and assembly

PRJNA300485 | ENA

Klebsiella ornithinolytica B6 strain:B6

Klebsiella ornithinolytica B6 strain:B6 Genome sequencing

PRJNA187030 | ENA

Pseudomonas putida B6-2

Complete genome of Pseudomonas putida B6-2

PRJNA316927 | ENA

Rhodobacter capsulatus B6 strain:B6

Rhodobacter capsulatus B6 strain:B6 Genome sequencing and assembly

PRJNA225631 | ENA

Vitamin B6 reduces hippocampal apoptosis in experimental pneumococcal meningitis

Hippocampal apoptosis is a characteristic feature of penumococcal meningitis associated with learning and memory deficitis as a sequel of the disease. We investigated the effect of vitamin B6 using an established infant rat model of experimental pneumococcal meningitis by histomorphology, transcript...

ORGANISM(S): Rattus norvegicus

2012-02-20 | E-MEXP-3555 | biostudies-arrayexpress

Cytophagales bacterium B6 strain:B6

Cytophagales str. B6 Genome sequencing

PRJDA69953 | ENA

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