Bacterial signal transduction

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CHEBI ID

CHEBI:16919 (4)
CHEBI:16335 (4)
CHEBI:16027 (4)
CHEBI:18257 (4)
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CHEBI:33198 (3)

Metabolite Name

Thymidine (12)
Uridine (12)
Inosine (11)
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Sebacic acid (10)
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IsPrivate

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Classification

bacteria (10)
fungi (1)

Modelling Approach

Logical model (1)
Ordinary differential equation model (1)

Study type

Transcription profiling by array (678)
RNA-seq of coding RNA (90)
ChIP-seq (31)
Unknown experiment type (27)
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2000 (7)
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1997 (1)

Lab affiliation

Associate Professor, SBS, The University of Hong Kong (1)
Biozentrum, University of Basel (1)
Center for Molecular Bacteriology and Infection, Imperial College London (1)
Deparment of Molecular and Cellular Biology University of Guelph Guelph, Ontario, Canada Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Martinsried, Germany (1)
Department of Medicine, Department of Pathology, Microbiology and Immunology Vanderbilt University School of Medicine; Veterans Affairs Tennessee Valley Healthcare System, Nashville, TN (1)
Department of Proteomics and Signal Transduction Max Planck Institute of Biochemistry Germany (1)
Department of proteomics and signal transduction, max planck institute of biochemistry, Germany (1)
Dr. Pradip Behare Scientist- Department of Microbiology National Dairy Research Institute Karnal - 132001 Haryana, India (1)
Huazhong Agricultural University (1)
Institut Pasteur, Université de Paris, CNRS USR2000, Proteomics Platform, Mass Spectrometry for Biology Unit, 75015 Paris, France (1)
Institute Krems Bioanalytics, IMC University of Applied Sciences Krems, 3500 Krems, Austria (1)
Institute of Biochemistry and Signal Transduction, University Medical Center Hamburg-Eppendorf (UKE), Martinistraße 52, 20246 Hamburg, Germany (1)
Institute of Biochemistry and Signal Transduction, University Medical Centre Hamburg-Eppendorf (UKE), 20246 Hamburg, Germany (1)
Institute of Microbiology, Ernst-Moritz-Arndt-University Greifswald, Friedrich-Ludwig-Jahn-Strasse 15, 17489 Greifswald, Germany (1)
Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET), Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Rosario, Argentina (1)
Instituto de Biotecnologia y Biologia Molecular. Departamento de Ciencias Biologicas, Facultad de Ciencias Exactas, Universidad Nacional de La Plata. CONICET, Argentina (1)
Max Planck Unit for the Science of Pathogens, D-10117 Berlin, Germany (1)
Proteomics Unit Max Planck Institute of Immunobiology and Epigenetics Stuebeweg 51 79108 Freiburg, Germany (1)
Rudolf Virchow Center for Experimental Biomedicine University of Wuerzburg, Josef-Schneider-Str. 2 97080 Wuerzburg Germany (1)
School of Life Sciences, The Chinese University of Hong Kong (1)
Southwest Medical University (1)
Structural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031 (1)
Unidad de Espectrometría de Masa (UEM-IBR) Instituto de Biología Molecular y Celular de Rosario (IBR-CONICET-UNR) (1)
University of Leicester, Department of Infection, Immunity & Inflammation and Molecular and Cell Biology, United Kingdom (1)
University of North Carolina at Chapel Hill (1)
signal transduction lab-1 NII, New Delhi, India (1)

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Citrate serves as a signal molecule to modulate carbon metabolism and iron homeostasis in Staphylococcus aureus

Pathogenic bacteria's metabolic adaptation for survival and proliferation within hosts is a crucial aspect of bacterial pathogenesis. Here, we demonstrate that citrate, the first intermediate of the tricarboxylic acid (TCA) cycle, plays a key role as a regulator of gene expression in Staphylococc...

2024-04-26 | MTBLS4276 | MetaboLights

Nutrient-Regulated Antisense and Intragenic RNAs Modulate a Signal Transduction Pathway

The budding yeast Saccharomyces cerevisiae alters its gene expression profile in response to a change in nutrient availability. The PHO-system is a well-studied case in the transcriptional regulation responding to nutritional changes in which a set of genes (PHO genes) is expressed to activate phosp...

ORGANISM(S): Saccharomyces cerevisiae

2008-12-23 | E-GEOD-13350 | biostudies-arrayexpress

Chromatin immunoprecipitation of activated yeast signal transduction protein kinases

Cellular signal transduction pathways modify gene expression programs in response to changes in the environment, but the mechanisms by which they regulate populations of genes under their control are not entirely understood. We present evidence that most mitogen-activated protein kinases and protei...

ORGANISM(S): Saccharomyces cerevisiae

2006-07-28 | E-TABM-98 | biostudies-arrayexpress

The Two-component Signal Transduction System CopRS of Corynebacterium glutamicum is Required for Adaptation to Copper-excess Stress

Copper is an essential cofactor for many enzymes but at high concentrations it is toxic for the cell. Copper ion concentrations ≥50 µM inhibited growth of Corynebacterium glutamicum. The transcriptional response to 20 µM Cu2+ was studied using DNA microarrays and revealed 26 genes that showed a ≥3-f...

ORGANISM(S): Corynebacterium glutamicum ATCC 13032

2011-09-04 | E-GEOD-27510 | biostudies-arrayexpress

Interfering with Proximal TLR4 to NF-kappaB Signal Transduction in Human Monocytes

This study investigated the global effect of carbon monoxide (CO) gas (250 ppm) on LPS- induced gene expression in THP-1 cells. CO predominantly suppresses LPS-induced gene response. Of the CO-suppressed genes, 18% were transcription factors and most others were cytokines, chemokines and immune resp...

ORGANISM(S): Homo sapiens

2010-06-08 | E-GEOD-16193 | biostudies-arrayexpress

Transcriptome of a malO deletion mutant of Clostridium perfringens during stationary phase growth.

The MalNO is a putative two-component signal transduction system, previously known as the VirJI sytem. MalO is the putative cognate response regulator of the MalN sensor histidine kinase. Based on previous evidence that suggested the plc gene, encoding ?-toxin, was upregulated during stationary ph...

ORGANISM(S): Clostridium perfringens str. 13

2014-12-22 | E-GEOD-28699 | biostudies-arrayexpress

Transcription profiling of human MCF7 cells treated with ErbB receptor ligands EGF and heregulin at multiple doses and sampled at multiple time points reveals signal transduction pathways devotedly convey quantitative properties of the dose-dependent activation of ErbB receptor to early transcription

ErbB receptor ligands, epidermal growth factor (EGF) and heregulin (HRG), induce dose-dependent transient and sustained intracellular signaling, proliferation and differentiation of MCF-7 breast cancer cells, respectively. In an effort to delineate the ligand-specific cell determination mechanism, w...

ORGANISM(S): Homo sapiens

2007-11-01 | E-GEOD-6462 | biostudies-arrayexpress

A conserved two-component signal transduction system controls the response to phosphate starvation in Bifidobacterium breve UCC2003

This work reports on the identification and molecular characterization of a two-component regulatory system (2CRS), encoded by phoRP in Bifidobacterium breve UCC2003, which controls the response to phosphate (Pi) starvation. The response regulator PhoP was shown to bind to the promoter region of pst...

ORGANISM(S): Bifidobacterium breve UCC2003

2012-09-06 | E-GEOD-34983 | biostudies-arrayexpress

PAS domains in bacterial signal transduction.

Not available

S-EPMC8169565 | biostudies-literature

MiST: a microbial signal transduction database.

Not available

S-EPMC1747179 | biostudies-literature

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