Bai R R - OmicsDI

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Unknown (5280)
Proteomics (95)
Transcriptomics (76)
Metabolomics (34)
Genomics (17)
Other (2)
Models (1)

Organisms

Homo sapiens (78)
Mus musculus (37)
Arabidopsis thaliana (8)
Rattus norvegicus (8)
Brassica rapa subsp. pekinensis (3)
Oryza sativa (3)
Populus alba (2)
Populus tremula x Populus alba (2)
Oryza sativa Japonica Group (2)
Danio rerio (2)
Murinae (1)
Brassica rapa subsp. oleifera (1)
Populus alba x Populus glandulosa (1)
(Populus tomentosa x Populus bolleana) x Populus tomentosa (1)
Myzus persicae (1)
Ipomoea batatas (1)
Glycine soja (1)
uncultured bacterium (1)
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Hordeum vulgare (1)
Solanum lycopersicum (1)
Escherichia coli (1)
Drosophila melanogaster (1)
Cucumis sativus (1)
Elaphurus davidianus (1)

Organisms

Limnospira indica PCC 8005 (1)
Homo sapiens (1)

Repository

biostudies-arrayexpress (80)
pride (57)
MetaboLights (34)
iProX (30)
EGA (8)
MassIVE (6)
ENA (4)
GPMDB (2)
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geo (1)
jPOST (1)
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Tissue

Cell culture (19)
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Disease

Disease free (3)
Not Available (2)
Colon cancer (2)
Severe acute respiratory syndrome (2)
Acute leukemia (1)
Alzheimer's disease (1)
Breast cancer (1)
COVID-19 (1)
Cervix carcinoma (1)
Diffuse gastric cancer (1)
Hydrocephalus (1)
Liver cancer (1)
Mental depression (1)
Mixed disorder as reaction to stress (1)
Neuroblastoma (1)
Pancreatic cancer (1)

Technology Type

Mass Spectrometry (57)
Mass spectrometry (28)
Shotgun proteomics (21)
Bottom-up proteomics (17)
Data-dependent acquisition (8)
Mass spectrometry assay (6)
Top-down proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (3)
Gel-based experiment (3)
Data-independent acquisition (2)
Mass spectrometry imaging (2)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (19)
Liquid Chromatography MS - positive - reverse phase (17)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive (4)
HiSeq X Ten (3)
Instrument (2)
LTQ Orbitrap (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - negative - reverse-phase (2)
Liquid Chromatography MS - positive (2)
Liquid Chromatography MS - positive - reverse-phase (2)
Agilent G2505B scanner (1)
Illumina HiSeq 2500 (1)
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NextSeq 500 (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap Velos (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - reverse-phase (1)

Publication Date

2025 (36)
2026 (23)
2014 (20)
2021 (19)
2024 (17)
2023 (14)
2022 (14)
2015 (13)
2013 (12)
2012 (8)
2010 (8)
2016 (7)
2019 (6)
2020 (3)
2008 (3)
2011 (2)
2017 (2)
2009 (1)
2007 (1)
2027 (1)
2018 (1)

UNIPROT ID/AC

P13405 (1)
P25322 (1)
P97377 (1)
Q61457 (1)
Q61501 (1)
Q9JKW8 (1)
A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16335 (11)
CHEBI:15971 (10)
CHEBI:16704 (10)
CHEBI:17895 (10)
CHEBI:55328 (10)
CHEBI:15843 (9)
CHEBI:16027 (9)
CHEBI:16467 (9)
CHEBI:17203 (9)
CHEBI:30769 (9)
CHEBI:7916 (9)
CHEBI:15824 (8)
CHEBI:16196 (8)
CHEBI:16235 (8)
CHEBI:16919 (8)
CHEBI:17053 (8)
CHEBI:17154 (8)
CHEBI:17351 (8)
CHEBI:17562 (8)
CHEBI:18132 (8)
CHEBI:18183 (8)
CHEBI:9300 (8)
CHEBI:15741 (7)
CHEBI:15756 (7)
CHEBI:15891 (7)
CHEBI:16015 (7)
CHEBI:16347 (7)
CHEBI:16414 (7)
CHEBI:16543 (7)
CHEBI:16643 (7)

Metabolite Name

Adenine (11)
Hypoxanthine (11)
Creatine (10)
Taurine (10)
Adenosine (9)
Cytidine (9)
Inosine (9)
Uracil (9)
Choline (8)
Cytosine (8)
Ketoleucine (8)
L-Arginine (8)
L-Carnitine (8)
L-Glutamine (8)
L-Histidine (8)
L-Serine (8)
Pyroglutamic acid (8)
Uridine (8)
Xanthine (8)
Acetylcholine (7)
Betaine (7)
L-Valine (7)
Pantothenic acid (7)
Spermidine (7)
Thymidine (7)
Thymine (7)
Xanthosine (7)
5-Aminolevulinic acid (6)
AMP (6)
Azelaic acid (6)

IsPrivate

False (1)

First Public Date

2026 (1)
2024 (1)
2015 (1)
2013 (1)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (42)
RNA-seq of coding RNA (19)
Comparative genomic hybridization by array (6)
RNA-seq of non coding RNA (4)
Methylation profiling by high throughput sequencing (3)
ChIP-seq (2)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (941)
2022 (700)
2024 (687)
2023 (672)
2021 (556)
2020 (393)
2019 (276)
2018 (195)
2017 (184)
2016 (174)
2015 (132)
2026 (119)
2014 (105)
2013 (73)
2012 (45)
2011 (34)
2010 (24)
2009 (21)
2008 (11)
2007 (5)
2005 (5)
2006 (3)
2001 (2)
2004 (1)
2003 (1)
2000 (1)

Lab affiliation

Children's Hospital of Nanjing Medical University (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
1. State Key Laboratory of Genetic Evolution & Animal Models, Key Laboratory of Healthy Aging Research of Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China 2. University of Chinese Academy of Sciences, Beijing 100101, China 3. KIZ/CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, Kunming 650201, China (1)
Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, Guangdong, China (1)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Biological Sciences, University of Southampton (1)
CAMS Key Laboratory of Translational Research on Lung Cancer, State Key Laboratory of Molecular Oncology, Department of Medical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
CNRS-IPHC-LSMBO (1)
Cell Biology Department, Harvard Medical School (1)
Changhai Hospital, Naval Medical University, Shanghai, 200433, China. (1)
College of Agriculture, Nanjing Agricultural University, Nanjing, China (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
College of Animal Science and Technology, Qingdao Agricultural University, China (1)
Department of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, People’s Republic of China; Research Unit of key techniques for treatment of burns and combined burns and trauma injury, Chinese Academy of Medical Sciences, Shanghai, China. (1)
Department of Cell Biology, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong 510515, China (1)
Department of Chemical Biology and Therapeutics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Department of Chemistry University of Texas at Austin (1)
Department of Chemistry,University of Virginia,Charlottesville, VA 22903 USA (1)
Department of Gastroenterology, The First Affiliated Hospital of Naval Medical University, Shanghai, 200433, China (1)
Department of General Surgery, Pancreatic Disease Center, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China. (1)
Department of Microbiology, The University of Hong Kong, Hong Kong, SAR, China (1)
Department of Neurosurgery and Institute for NeurosciencesUniversity Hospital of Toulouse, Toulouse, France. Toulouse NeuroImaging Center (ToNIC), University of Toulouse, INSERM, UPS, Toulouse, France. (1)
Department of Radiation Biology, Beijing Key Laboratory for Radiobiology, Beijing Institute of Radiation Medicine, Beijing 100850, China (1)
Department of Surgery, Yale School of Medicine, New Haven, CT (1)
Department of System Biology, School of Life Sciences, Guangdong Provincial Key Laboratory of Cell Microenvironment and Disease Research, Shenzhen Key Laboratory of Cell Microenvironment, Southern University of Science and Technology, Shenzhen, 518055, China. (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Harvard (1)
Harvard Medical School (1)

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Multi-omics insights into the formation mechanism of aging quality in white tea (Bai Mudan) during storage: integrating sensory evaluation, volatilomics, metabolomics, and metagenomics

White tea (WT) develops unique aged quality during long-term storage, characterized by progressive changes in sensory properties and chemical composition. However, integrated insights into the sensory, metabolites, and microbial contribution underlying this...

2025-11-18 | MTBLS13336 | MetaboLights

RNA-seq of rat myocardial tissue to investigate the cardioprotective mechanism of baicalin in myocardial ischemia-reperfusion injury

This study aimed to investigate the cardioprotective mechanism of baicalin (BAI) against myocardial ischemia-reperfusion injury (MIRI) in rats. We performed RNA-seq on left ventricular myocardial tissue from three groups: Sham (vehicle control), I/R (ischemia-reperfusion injury model), and I/R+BAI (...

ORGANISM(S): Rattus norvegicus

2026-07-31 | E-MTAB-17471 | biostudies-arrayexpress

BioInstaller: a comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform.

Not available

S-EPMC6215441 | biostudies-literature

TRIM28 is an E3 ligase of IRP2 suppressing ischemia/reperfusion-induced myocardial ferroptosis

Myocardial ischemia/reperfusion (I/R) injury is a common and severe clinical complication in patients with ischemic heart disease (IHD) after reperfusion therapy. Effective therapeutic strategies for myocardial I/R injury remain limited. Ferroptosis is a form of regulated cell death characterized by...

ORGANISM(S): Rattus Norvegicus

2025-12-28 | PXD072478 |

The outer membrane protein of Riemerella anatipestifer YM strain interacting with duck vitronectin was screened by pull-down assay sequencing by mass spectrometry and search for complement escape related protein of Riemerella anatipestifer YM strain.

Riemerella anatipestifer can cause infectious serositis in ducklings with high mortality. Vitronectin acts as a complement regulator and plays a role in the terminal pathway of complement activation. It is a widely used strategy for Gram-negative bacteria to capture vitronectin to the surface of bac...

ORGANISM(S): Riemerella Anatipestifer Ra-ym

2023-02-01 | PXD039753 |

Associations between Nausea, Vomiting, Fatigue and Health-Related Quality of Life of Women in Early Pregnancy: The Generation R Study.

Not available

S-EPMC5096665 | biostudies-literature

Crosslink: An R Package for Network Visualization of Grouped Nodes.

Not available

S-EPMC8322777 | biostudies-literature

R-loop-derived cytoplasmic RNA-DNA hybrids activate an immune response.

Not available

S-EPMC9949885 | biostudies-literature

Genetic polymorphisms analysis of pharmacogenomic VIP variants in Bai ethnic group from China.