Bai S S - OmicsDI

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Unknown (8167)
Proteomics (196)
Transcriptomics (98)
Metabolomics (33)
Genomics (32)
Other (2)
Models (1)

Organisms

Homo sapiens (139)
Mus musculus (59)
Arabidopsis thaliana (12)
Rattus norvegicus (10)
Brassica rapa subsp. pekinensis (4)
Solanum lycopersicum (4)
Glycine max (3)
Populus alba (2)
Myzus persicae (2)
Oryza sativa (2)
Drosophila melanogaster (2)
Danio rerio (2)
Murinae (1)
Brassica rapa subsp. oleifera (1)
Streptomyces hygroscopicus subsp. jinggangensis (1)
(Populus tomentosa x Populus bolleana) x Populus tomentosa (1)
Ipomoea batatas (1)
Glycine soja (1)
uncultured bacterium (1)
Brassica rapa subsp. chinensis (1)
Strongylocentrotus purpuratus (1)
Siniperca chuatsi (1)
Macaca mulatta (1)
soil metagenome (1)
Brassica napus (1)
Staphylococcus epidermidis (1)
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Medicago truncatula (1)
Zea mays (1)
Populus trichocarpa (1)

Organisms

Saccharomyces cerevisiae (5)
Arabidopsis thaliana (1)
Homo sapiens (1)
Mus musculus (1)

Repository

pride (119)
biostudies-arrayexpress (105)
iProX (67)
MetaboLights (33)
EGA (12)
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geo (2)
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Tissue

Cell culture (29)
Brain (12)
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Whole body (2)
Brain (1)
Adductor (1)
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Blood (1)
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Cervix squamous epithelium (1)
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SW-1990 cell (1)

Disease

Alzheimer's disease (4)
Cervix carcinoma (3)
Not Available (2)
Brain cancer (2)
Breast cancer (2)
Colon cancer (2)
Disease free (2)
Liver cancer (2)
Wounds and Injuries (2)
Alzheimer's disease 3 (1)
Brain glioblastoma multiforme (1)
COVID-19 (1)
Gastric adenocarcinoma (1)
Gastric signet ring cell adenocarcinoma (1)
Hydrocephalus (1)
Lung cancer (1)
Mental depression (1)
Mixed disorder as reaction to stress (1)
Myocardial ischemia (1)
Nephrolithiasis (1)
Nephrotic syndrome (1)
Pancreatic cancer (1)
Residual chronic schizophrenia (1)
Severe acute respiratory syndrome (1)
Skin melanoma (1)
Spermatocytoma (1)

Technology Type

Mass Spectrometry (119)
Shotgun proteomics (49)
Mass spectrometry (27)
Bottom-up proteomics (27)
Data-dependent acquisition (16)
Affinity purification coupled with mass spectrometry proteomics (10)
Top-down proteomics (10)
Mass spectrometry assay (6)
Data-independent acquisition (6)
Gel-based experiment (6)
Immunopeptidomics (2)
SWATH MS (2)
Illumina_Infinium_HumanMethylation450, Illumina_HumanHT-12v4 (1)
Affinity proteomics (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
Mass spectrometry imaging (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (18)
Liquid Chromatography MS - positive - reverse phase (16)
Liquid Chromatography MS - negative - hilic (6)
Liquid Chromatography MS - positive - hilic (6)
Q Exactive (5)
HiSeq X Ten (3)
Illumina HiSeq 2500 (3)
Illumina HiSeq 2000 (2)
Instrument (2)
LTQ Orbitrap (2)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive (2)
Agilent G2505B scanner (1)
Illumina Genome Analyzer IIx (1)
Illumina HiSeq X (1)
Illumina HiSeq 1000 (1)
Illumina NovaSeq 6000 (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
6550 iFunnel Q-TOF LC/MS (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Q Exactive HF (1)
Direct infusion MS - negative (1)
Direct infusion MS - positive (1)
Flow injection analysis MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2025 (49)
2024 (33)
2026 (32)
2021 (32)
2022 (29)
2023 (27)
2014 (26)
2013 (18)
2019 (14)
2015 (13)
2010 (13)
2016 (12)
2020 (11)
2012 (8)
2018 (6)
2017 (5)
2008 (4)
2007 (2)
2011 (1)
2009 (1)
2005 (1)

UNIPROT ID/AC

P13405 (1)
P25322 (1)
P97377 (1)
Q61457 (1)
Q61501 (1)
Q9JKW8 (1)
A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WVW2 (1)
A0A087WVZ5 (1)
A0A087WWA5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1S3 (1)
A0A087X1V9 (1)
A0A0A0MR66 (1)
A0A0A0MS07 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0M8Q6 (1)
A0MZ66 (1)

ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:16335 (11)
CHEBI:15971 (10)
CHEBI:16704 (10)
CHEBI:17895 (10)
CHEBI:55328 (10)
CHEBI:15843 (9)
CHEBI:16027 (9)
CHEBI:16467 (9)
CHEBI:17203 (9)
CHEBI:30769 (9)
CHEBI:7916 (9)
CHEBI:15824 (8)
CHEBI:16196 (8)
CHEBI:16235 (8)
CHEBI:16919 (8)
CHEBI:17053 (8)
CHEBI:17154 (8)
CHEBI:17351 (8)
CHEBI:17562 (8)
CHEBI:18132 (8)
CHEBI:18183 (8)
CHEBI:9300 (8)
CHEBI:15741 (7)
CHEBI:15756 (7)
CHEBI:15891 (7)
CHEBI:16015 (7)
CHEBI:16347 (7)
CHEBI:16414 (7)
CHEBI:16543 (7)
CHEBI:16643 (7)

Metabolite Name

Creatine (12)
Hypoxanthine (12)
Adenosine (11)
Adenine (10)
Cytidine (10)
Taurine (10)
Uracil (10)
Betaine (9)
Cytosine (9)
Pyroglutamic acid (9)
Xanthine (9)
Acetylcholine (8)
Choline (8)
Inosine (8)
L-Arginine (8)
L-Carnitine (8)
Pantothenic acid (8)
Thymine (8)
Creatinine (7)
Dodecanoic acid (7)
Indole (7)
Ketoleucine (7)
L-Histidine (7)
L-Leucine (7)
L-Proline (7)
L-Serine (7)
L-Tyrosine (7)
Ornithine (7)
Spermidine (7)
Thymidine (7)

First Public Date

2023 (5)
2015 (2)
2024 (1)
2017 (1)
2016 (1)
2014 (1)

Modelling Approach

Ordinary differential equation model (1)

Lab affiliation

St. Jude Children's Research Hospital (6)
Children's Hospital of Nanjing Medical University (3)
Clinical Laboratory of BGI Health, BGI-Shenzhen, Shenzhen 518083, China (3)
Institute of Advanced Clinical Medicine, Institute of Medical Technology, Peking University Beijing, China. (2)
Institute of Translational Medicine, Zhejiang University School of Medicine, Zhejiang University (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
XiangYa hospital of Central south university (2)
1. State Key Laboratory of Genetic Evolution & Animal Models, Key Laboratory of Healthy Aging Research of Yunnan Province, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650201, China 2. University of Chinese Academy of Sciences, Beijing 100101, China 3. KIZ/CUHK Joint Laboratory of Bioresources and Molecular Research in Common Diseases, Kunming 650201, China (1)
1Academy of Orthopedics, Guangdong Province, Guangdong Provincial Key Laboratory of Bone and Joint Degeneration Diseases, The Third Affiliated Hospital of Southern Medical University, Guangzhou, China 2The Third School of Clinical Medicine, Southern Medical University, Guangzhou, China (1)
2011 Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Key Laboratory of Medical Epigenetics, Key Laboratory of Immune Microenvironment and Disease (Ministry of Education), Department of Biochemistry and Molecular Biology, Tianjin Medical University, Tianjin 300070, China (1)
Affiliated Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Amgen (1)
Biological Sciences, University of Southampton (1)
Biomedical Engineering Department, Peking University, Beijing, China. (1)
CAMS Key Laboratory of Translational Research on Lung Cancer, State Key Laboratory of Molecular Oncology, Department of Medical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
CAS Key Laboratory for Biomedical Effects of Nanomaterials and Nanosafety, Institute of High Energy Physics and National Center for Nanoscience and Technology of China, Chinese Academy of Sciences, Beijing 100049, P. R. China (1)
CNRS-IPHC-LSMBO (1)
Cell Biology Laboratory, Beijing Neurosurgical Institute, China (1)
Changhai Hospital, Naval Medical University, Shanghai, 200433, China. (1)
Children's Hospital of Soochow University, Suzhou (1)
Children's hospitall of Chongqing medical university China (1)
Chinese Center for Disease Control and Prevention (1)
College of Animal Science and Technology, Key Laboratory of Animal Nutrition and Feed Science of Jilin Province, Key Laboratory of Animal Production Product Quality and Security Ministry of Education, Jilin Agricultural University, China (1)
College of Life Sciences, Shandong Normal University (1)
College of Life sciences, Heilongjiang University/Heilongjiang Provincial Key Laboratory of Ecological Restoration and Resource Utilization for Cold Region, China (1)
Depart of Respiratory and Clinical Care Medicine, The Second Center & National Clinical Research Center for Geriatic Disease, Medical School of Chinese PLA, China. (1)
Department of Biochemistry and Molecular Genetics University of Virginia School of Medicine (1)
Department of Biology, Henan University, Kaifeng 475001, The Peoples Republic of China. (1)
Department of Burn Surgery, the First Affiliated Hospital of Naval Medical University, Shanghai, People’s Republic of China; Research Unit of key techniques for treatment of burns and combined burns and trauma injury, Chinese Academy of Medical Sciences, Shanghai, China. (1)
Department of Cardiology, The Second Xiangya Hospital, Central South University, Changsha, Hunan 410011, China. (1)

IsPrivate

False (1)

Study type

Transcription profiling by array (46)
RNA-seq of coding RNA (30)
Comparative genomic hybridization by array (7)
RNA-seq of non coding RNA (5)
ChIP-seq (4)
Methylation profiling by high throughput sequencing (4)
Transcription profiling by tiling array (3)
Plant - High-throughput sequencing (1)
Animal - High-throughput sequencing (1)
Ribo-seq (1)
DNA-seq (1)
Genotyping by high throughput sequencing (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (1349)
2022 (1159)
2024 (1004)
2023 (970)
2021 (900)
2020 (606)
2019 (472)
2018 (340)
2017 (308)
2016 (250)
2026 (205)
2015 (191)
2014 (158)
2013 (104)
2012 (71)
2011 (52)
2010 (42)
2009 (28)
2008 (21)
2007 (12)
2005 (11)
2006 (7)
2004 (6)
2003 (3)
2002 (2)
2001 (1)

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Multi-omics insights into the formation mechanism of aging quality in white tea (Bai Mudan) during storage: integrating sensory evaluation, volatilomics, metabolomics, and metagenomics

White tea (WT) develops unique aged quality during long-term storage, characterized by progressive changes in sensory properties and chemical composition. However, integrated insights into the sensory, metabolites, and microbial contribution underlying this...

2025-11-18 | MTBLS13336 | MetaboLights

GRIP-seq data for S. purpuratus, 24hpf embryos

This is the inaugural dataset for the new GRIP-seq method to map cis-regulatory regions genome-wide. This dataset is for the purple sea urchin embryo, S. purpuratus, at 24 hours post fertilization. There are two experimental samples using an anti-Pol(II) antibody to pull down regulatory region-promo...

ORGANISM(S): Strongylocentrotus purpuratus

2016-06-14 | E-MTAB-3607 | biostudies-arrayexpress

Transcription profiling of mouse hippocampus after maternal treatment with saline or 20 mg/kg cocaine twice daily on gestational days 8-19

We explored the hypothesis that maternal cocaine exposure could alter the fetal epigenetic machinery sufficiently to cause lasting neurochemical and functional changes in the offspring. These data were used as preliminary results for paper:; Maternal cocaine administration in mice alters DNA methy...

ORGANISM(S): Mus musculus

2008-06-15 | E-GEOD-6651 | biostudies-arrayexpress

The viable but non-culturable (VBNC) status of Shewanella putrefaciens (S. putrefaciens) with thermosonication (TS) treatment.

Not available

S-EPMC11345692 | biostudies-literature

GRIP-seq data for S. purpuratus, 24hpf embryos

PRJEB9608 | ENA

RNA-seq of Brassica rapa leaves elicited with either Pseudomonas syringae pv. maculicola or flg22

Phytoalexins are abundant in edible crucifers and have important biological activities, yet no dedicated gene for their biosynthesis is known. Here, we report two new cytochromes P450 from the non-model plant Brassica rapa (Chinese cabbage) that catalyze unprecedented S-heterocyclizations in cyclobr...

ORGANISM(S): Brassica rapa subsp. pekinensis

2015-09-21 | E-GEOD-69785 | biostudies-arrayexpress

MLS0315771 S. aureus YUSA145 proteomics

Quantitative label-free proteomic analysis investigated the global proteomic response of S. aureus YUSA145 treated with 1/2 × MIC MLS0315771 during the exponential growth phase. The results were obtained after performing principal component analysis (PCA) on the raw data and excluding two replicates...

ORGANISM(S): Staphylococcus Aureus

2026-01-24 | PXD073535 |

S-acylation of TDP43 regulates its condensation in amyotrophic lateral sclerosis

TDP43 inclusion bodies are widely present in the majority of patients with familial and sporadic amyotrophic lateral sclerosis (ALS). The mechanisms regulating TDP43 solubility remain incompletely understood. Here, we report that TDP43 undergoes S-acylation primarily at the Cys244 residue by the S-a...

ORGANISM(S): Homo sapiens (Human)

2026-05-17 | PXD061643 | Pride

Insights into Thiol-Aromatic Interactions: A Stereoelectronic Basis for S-H/π Interactions.

Not available

S-EPMC5890429 | biostudies-literature

Detection of an inversion in the Ty-2 region between S. lycopersicum and S. habrochaites by a combination of de novo genome assembly and BAC cloning.

Not available

S-EPMC4572051 | biostudies-literature

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