Banerjee J J - OmicsDI

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Unknown (1800)
Proteomics (35)
Transcriptomics (13)
Genomics (12)
Metabolomics (3)
Models (1)
Genomic (1)

Organisms

Homo sapiens (42)
Mus musculus (7)
Pseudomonas putida KT2440 (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Escherichia coli (2)
Cancer (1)
Mus musculus domesticus (1)
Bat coronavirus RaTG13 (1)
Channa striata (1)
Coccinia grandis (1)
Labeo rohita (1)
Mycobacterium tuberculosis H37Rv (1)
Vibrio cholerae O1 biovar El Tor str. N16961 (1)
Xiphophorus malinche x Xiphophorus birchmanni (1)

Organisms

Homo sapiens (2)

Repository

pride (33)
biostudies-arrayexpress (15)
EGA (8)
MetaboLights (3)
PanoramaPublic (2)
ENA (2)
BioModels (1)
dbGaP (1)

Tissue

Blood plasma (4)
Cell culture (4)
Blood cell (3)
Nasal lavage fluid (2)
Permanent cell line cell (2)
Adipose tissue (1)
Brain (1)
Cell suspension culture (1)
Flower bud (1)
Hepatocyte (1)
LNCaP cell (1)
Leukocyte (1)
Liver (1)
Lymph node (1)
Macrophage (1)
Pancreas (1)
Pluripotent stem cell (1)
Primary cell (1)
Prostate gland (1)
Tongue squamous epithelium (1)

Disease

COVID-19 (2)
Disease free (2)
Amyotrophic lateral sclerosis (1)
Diabetes mellitus (1)
Head and neck squamous cell carcinoma (1)
Liver disease (1)
Lung adenocarcinoma (1)
Lymphoma (1)
Metabolic dysfunction-associated steatotic liver disease (1)
Obesity (1)
Prostate cancer (1)
Respiratory syncytial virus infectious disease (1)

Technology Type

Mass Spectrometry (33)
Shotgun proteomics (14)
Bottom-up proteomics (6)
Data-dependent acquisition (5)
Mass spectrometry (3)
Gel-based experiment (3)
SWATH MS (3)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-independent acquisition (2)
SRM/MRM (2)
Aperio (1)
Illumina HiSeq 2500, Illumina MiSeq, HiSeq X Ten (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (3)
Applied Biosystems (1)
Mo-Bio Powersoil extraction kit (1)
Experimental (1)
Illumina Genome Analyzer IIx (1)
Illumina MiSeq (1)
Illumina HiSeq 2000 (1)

Publication Date

2023 (7)
2026 (6)
2025 (5)
2024 (4)
2022 (4)
2021 (4)
2015 (3)
2013 (3)
2018 (2)
2016 (2)
2008 (2)
2020 (2)
2019 (2)
2014 (1)
2012 (1)
2011 (1)
2007 (1)
2005 (1)
2017 (1)

CHEBI ID

CHEBI:10106 (2)
CHEBI:10135 (2)
CHEBI:102216 (2)
CHEBI:111173 (2)
CHEBI:116314 (2)
CHEBI:1217 (2)
CHEBI:134485 (2)
CHEBI:134750 (2)
CHEBI:134758 (2)
CHEBI:134827 (2)
CHEBI:134834 (2)
CHEBI:134894 (2)
CHEBI:134934 (2)
CHEBI:135291 (2)
CHEBI:135566 (2)
CHEBI:135932 (2)
CHEBI:137055 (2)
CHEBI:137125 (2)
CHEBI:137268 (2)
CHEBI:1391 (2)
CHEBI:142245 (2)
CHEBI:142683 (2)
CHEBI:143054 (2)
CHEBI:143870 (2)
CHEBI:1458 (2)
CHEBI:156235 (2)
CHEBI:15746 (2)
CHEBI:15756 (2)
CHEBI:1582 (2)
CHEBI:15843 (2)

Metabolite Name

(-)-Octanoylcarnitine (2)
(-)-Rhododendrin (2)
(-)-THREO-SPHINGOSINE (2)
(2E)-2-Tridecene-4,6,8-triyn-1-ol (2)
(2E,4E,12Z)-N-Isobutyl-2,4,12-octadecatrienamide (2)
(2R,3R,4S,5S,6R)-2-[(3Z)-hex-3-en-1-yloxy]-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2R,3S,4S,5R,6R)-2-(hydroxymethyl)-6-(2-phenylethoxy)oxane-3,4,5-triol (2)
(2R,3S,4S,5S,6R)-2-({7-hydroxy-4-[(3Z)-5-hydroxy-3-methylpent-3-en-1-yl]-4a,8,8-trimethyl-3-methylidene-decahydronaphthalen-2-yl}oxy)-6-(hydroxymethyl)oxane-3,4,5-triol (2)
(2S)-2-Amino-8-hydroxyoctanoic acid (2)
(3S)-3-Amino-2-azepanone (2)
(4E)-1,7-Bis(4-hydroxyphenyl)-4-hepten-3-one (2)
(9E,12E)-9,12-Octadecadienoic acid (2)
(9Z)-9-Octadecenamide (2)
(E)-Dacarbazine (2)
(E)-p-coumaric acid (2)
(Z)-3-butylidene-7-hydroxyphthalide (2)
(Z)-Hex-3-enyl benzoate (2)
1,2-Cyclohexadione (2)
1,3,7-Octanetriol (2)
1,4-Anhydro-6-O-dodecanoyl-2,3-bis-O-(2-hydroxyethyl)-D-glucitol (2)
1-(4-methylphenyl)-3,5-diphenylpent-2-ene-1,5-dione (2)
1-Allyl-2,3,4,5-tetramethoxybenzene (2)
1-Heptanethiol (2)
1-Hexadecanoyl-sn-glycero-3-phosphocholine (2)
1-Hexyl-2-methylbenzene (2)
1-Linoleoyl-sn-glycero-3-phosphocholine (2)
1-Monopalmitoylglycerol (2)
1-Oleoyl-rac-glycerol (2)
1-Tetradecylamine (2)
1-[2,6-Dimethyl-4-(2-methyl-2-propanyl)-3,5-dinitrophenyl]ethanone (2)

IsPrivate

False (1)

Submitter Keywords

Immuno-oncology (1)

First Public Date

2013 (2)

Modelling Approach

Ordinary differential equation model (1)

Study type

Transcription profiling by array (8)
RNA-seq of coding RNA (4)
Comparative genomic hybridization by array (1)
ChIP-seq (1)
DNA-seq (1)

Release Date

2025 (215)
2022 (203)
2024 (201)
2023 (197)
2021 (186)
2020 (148)
2019 (116)
2018 (97)
2017 (83)
2016 (80)
2015 (70)
2014 (49)
2013 (35)
2026 (32)
2011 (21)
2010 (20)
2012 (15)
2009 (14)
2008 (12)
2007 (8)
2005 (3)
2006 (3)
2004 (2)
2002 (2)
2000 (2)
2001 (1)

Lab affiliation

Proteomics Lab, 304, BSBE Department, Indian Institute Technology Bombay, Powai, Mumbai, India-400076 (3)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (2)
Associate Professor & Co-Chair, Biology Division Indian Institute of Science Education and Research (IISER Pune) Dr. Homi Bhabha Road, Pashan, Pune-411008. Maharashtra, India. (1)
Associate Professor, Centre for Biosystems Science and Engineering, IISC Bangalore, India (1)
CNRS, UMR7178, LSMBO, 67087 Strasbourg, FRANCE Université de Strasbourg, IPHC, 25 rue Becquerel, 67087 Strasbourg, FRANCE (1)
Chemistry Department, University of Minnesota (1)
Department of Biochemistry and Molecular Genetics, University of Anschutz Medical Campus, Aurora CO (1)
Department of Biological Sciences and Bioengineering, Indian Institute of Technology, Kanpur 208016, India (1)
Department of Biology, Stanford University, USA (1)
Department of Cardiovascular & Metabolic Sciences, Cleveland Clinic Foundation, USA (1)
Department of Internal Medicine, Section on Molecular Medicine, Wake Forest School of Medicine, Winston-Salem, NC, 27157, USA (1)
Dipyaman Ganguly, IICB-Translational Research Unit of Excellence, CSIR-Indian Institute of Chemical Biology, Kolkata, West Bengal , India, 700091 (1)
Functional Proteomics Institute of Cancer Research (1)
Harvard Institutes of Medicine 2nd floor, Room 221 4 Blackfan Circle Boston, MA 02115 (1)
Helmholtz-Institute for Pharmaceutical Research Saarland (1)
ICAR- Central Inland Fisheries Research Institute, Fishery Resource and Environmental Management Division, Biochemistry Laboratory, Proteomics Unit, Barrackpore- 700120. Ph- +919230618153 (1)
ICAR-Central Inland Fisheries Research Institute, Fishery Resourse & Environmental Management Division, Biochemistry Lab-1, Proteomics Unit, Barrackpore, Kolkata, India (1)
Institute for Systems Biology, Seattle, WA, USA (1)
Member Cell and Molecular Biology Department St. Jude Children's Research Hospital Memphis, TN-38105 (1)
NIAID, NIH (1)
Oncode Institute, Hubrecht Institute, Royal Netherlands Academy of Arts and Sciences (KNAW) and University Medical Center Utrecht, the Netherland Department of Bionanoscience, Kavli Institute of Nanoscience Delft, Technische Universiteit Delft, Van der Maasweg 9, 2629 HZ Delft, the Netherlands. (1)
Oslo University, Department of Biosciences, Section for Biochemistry and Molecular Biology, Oslo, Norway (1)
Professor in Molecular Genetics and Microbiology Duke University School of Medicine Durham, NC (1)
Professor of Biomolecular Chemistry at the University of Wisconsin - Madison (1)
Professor of Oncology and Biochemistry Associate Director: Center for Metabolomic Studies. Georgetown University Medical Center Washington, DC, USA 20007 (1)
Quantitative Biosciences Institute (QBI), University of California, San Francisco, San Francisco, CA USA J. David Gladstone Institutes, San Francisco, San Francisco, CA, USA Department of Bionengineer and Therapeutic Sciences, University of California, San Francisco, San Francisco, CA, USA (1)
Regional Centre for Biotechnology, Faridabad, India (1)
Staff Scientist Biological Systems & Engineering Division Lawrence Berkeley National Laboratory Berkeley CA 94720 (1)
Stanford University (1)
UK Dementia Research Institute at University of Edinburgh, University of Edinburgh, Edinburgh bioQuarter, Chancellor’s Building, 49 Little France Crescent, Edinburgh, EH16 4SB UK (1)

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Panaxsiamensis J. Wen, a new species of the ginseng genus (Panax, Araliaceae) from northern Thailand.

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S-EPMC10576250 | biostudies-literature

Powdery mildew effectors AVR_A1 and BEC1016 target the ER J-domain protein HvERdj3B required for immunity in barley.

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Regulation of endosomal clathrin and retromer-mediated endosome to Golgi retrograde transport by the J-domain protein RME-8.

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What nudges you to take a vaccine? Understanding behavioural drivers of COVID-19 vaccinations using large-scale experiments in the G-7 countries.

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Sumana2018 - Mathematical modeling of cancer-immune system, considering the role of antibodies.

Mathematical modeling of cancer-immune system, considering the role of antibodies. Ghosh S1, Banerjee S2. Author information 1 Department of Mathematics, Indian Institute of Technology Roorkee, Roorkee, Uttaranchal, 247667, India. 2 Department of Mathematics, Indian Institute of Technology ...

2024-09-02 | BIOMD0000000885 | BioModels

Immuno-oncology

Human papillomavirus (HPV) E7 induces prolonged G2 following S phase reentry in differentiated human keratinocytes.

Not available

S-EPMC3083224 | biostudies-literature

Metabolome and exposome profiling of the biospecimens from COVID-19 patients in India (Nasopharyngeal swab assay)

INTRODUCTION: COVID-19 has become a global impediment by bringing everything to a halt starting from January 2020. India underwent the lockdown starting from 22nd March 2020 with the sudden spike in the number of COVID-19 patients in major cities and states. This study focus...

2022-01-13 | MTBLS2349 | MetaboLights

Metabolome and exposome profiling of the biospecimens from COVID-19 patients in India (Blood plasma assay)

2022-01-13 | MTBLS2291 | MetaboLights

The higher level of complexity of K-Ras4B activation at the membrane.

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S-EPMC4799498 | biostudies-literature

Study of full-length porcine endogenous retrovirus genomes with envelope gene polymorphism in a specific-pathogen-free Large White swine herd.

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S-EPMC116370 | biostudies-literature