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Unknown (3318)
Transcriptomics (125)
Proteomics (82)
Genomics (42)
Metabolomics (7)
Genomic (1)

Organisms

Homo sapiens (122)
Mus musculus (29)
Arabidopsis thaliana (23)
Saccharomyces cerevisiae (13)
Eohaustorius estuarius (11)
Daphnia pulex (9)
Rattus norvegicus (5)
Caenorhabditis elegans (4)
Saccharomyces cerevisiae Vin13 (3)
Drosophila melanogaster (3)
Gallus gallus (2)
Candida albicans (2)
Bombus terrestris (2)
Danio rerio (2)
Xenopus tropicalis (2)
Neurospora crassa OR74A (1)
Chenopodium quinoa (1)
Zea mays (1)
Helicobacter pylori (1)
Aspergillus nidulans FGSC A4 (1)
Canis lupus familiaris (1)
Escherichia coli (1)
Lupinus albus (1)
Nicotiana tabacum (1)
Triticum aestivum (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (130)
pride (71)
EGA (34)
MassIVE (7)
MetaboLights (7)
ENA (2)
dbGaP (1)
geo (1)
iProX (1)
jPOST (1)
PanoramaPublic (1)
PeptideAtlas (1)

Tissue

Cell culture (19)
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Permanent cell line cell (6)
Whole body (6)
Peripheral blood mononuclear cell (5)
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HeLa cell (1)
JURKAT cell (1)

Disease

Chronic lymphocytic leukemia (4)
Acute myeloid leukemia (2)
Alzheimer's disease (2)
Chronic myeloid leukemia (2)
Multiple sclerosis (1)
Acute T cell leukemia (1)
Candidiasis (1)
Cardiomyopathy (1)
Colon cancer (1)
Coronavirus infectious disease (1)
Disease free (1)
Hepatocellular carcinoma (1)
Lung carcinoma (1)
Myopathy (1)
Neurological dysfunction (1)
Osteosarcoma (1)
Parkinson's disease (1)
Prostate adenocarcinoma (1)
Renal clear cell carcinoma (1)
Severe acute respiratory syndrome (1)

Technology Type

Mass Spectrometry (71)
Shotgun proteomics (41)
Bottom-up proteomics (17)
Affinity purification coupled with mass spectrometry proteomics (9)
Gel-based experiment (7)
Mass spectrometry (5)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Illumina HiSeq 2000 (2)
ILLUMINA, Illumina HiSeq 2500, HiSeq X Ten, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II (1)
Illumina HiSeq 2000, HumanMethylation450k Bead Chip - Genome Studio, Illumina Genome Analyzer IIx (1)
Illumina HiSeq 2500, ILLUMINA, Affymetrix GeneChip Scanner 3000 7g (1)
Illumina HiSeq 4000, ILLUMINA (1)
Mass spectrometry assay (1)
NMR spectroscopy (1)
Affinity proteomics (1)
Immunopeptidomics (1)
SRM/MRM (1)
Top-down proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (2)
LTQ Orbitrap Velos (2)
Orbitrap Exploris 480 (2)
Liquid Chromatography MS - negative - reverse phase (2)
ScanArray Express HT [PerkinElmer] (1)
Illumina NovaSeq X (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap XL (1)
Q Exactive HF (1)
Bruker (1)
Liquid Chromatography MS - HILIC (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - positive - reverse phase (1)
Liquid Chromatography MS – HILIC (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Q Exactive (Thermo Scientific) (1)
LTQ Orbitrap (1)
ThermoFinnigan LCQ Deca XP (1)
ThermoFinnigan LTQ (1)
ThermoFinnigan LTQ OrbiTrap (1)
Waters Q-TOF II (1)
Waters Q-TOF Micro (1)
Waters Q-TOF Ultima (1)

Publication Date

2015 (34)
2011 (26)
2024 (20)
2008 (15)
2013 (13)
2025 (12)
2023 (11)
2026 (9)
2022 (9)
2012 (9)
2021 (8)
2014 (8)
2009 (8)
2016 (7)
2020 (7)
2010 (6)
2019 (6)
2017 (5)
2007 (3)
2018 (2)
2004 (1)

UNIPROT ID/AC

A0A024R8H9 (1)
A0A024RC46 (1)
A0A087WTX5 (1)
A0A087WXI0 (1)
A0A087WYL9 (1)
A0A087X130 (1)
A0A087X1V9 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0B4J220 (1)
A0AV02 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A2AJT9 (1)
A2BFH1 (1)
A2NUT2 (1)
A3KMH1 (1)
A4D110 (1)
A4D1S5 (1)
A4UGR9 (1)
A5A3E0 (1)
A5YKK6 (1)
A6NDU8 (1)
A6NHL2 (1)
A6NHQ2 (1)
A6NHR9 (1)
A6NJ78 (1)
A6NJJ0 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:30769 (3)
CHEBI:1427 (2)
CHEBI:15741 (2)
CHEBI:16828 (2)
CHEBI:17275 (2)
CHEBI:30763 (2)
CHEBI:1148 (1)
CHEBI:11563 (1)
CHEBI:131690 (1)
CHEBI:132712 (1)
CHEBI:133142 (1)
CHEBI:133145 (1)
CHEBI:133148 (1)
CHEBI:134016 (1)
CHEBI:134255 (1)
CHEBI:136548 (1)
CHEBI:137478 (1)
CHEBI:137479 (1)
CHEBI:137481 (1)
CHEBI:137482 (1)
CHEBI:137484 (1)
CHEBI:137492 (1)
CHEBI:137493 (1)
CHEBI:137496 (1)
CHEBI:137499 (1)
CHEBI:137501 (1)
CHEBI:137503 (1)
CHEBI:137505 (1)
CHEBI:137506 (1)
CHEBI:137508 (1)

Metabolite Name

(+)-catechin (1)
(+)-epigallocatechin (1)
(+/-)salipurposide (1)
(-)-epicatechin-(4alpha->8)-(-)-epicatechin (1)
(-)-epigallocatechin (1)
(2E)-3-Phenyl-2-propen-1-yl-6-O-(6-deoxy-alpha-L-mannopyranosyl)-beta-D-glucopyranoside (1)
(2E)-3-Phenyl-2-propen-1-yl-6-O-beta-D-xylopyranosyl-beta-D-glucopyranoside (1)
(2R,3R)-2,3-Dihydroxy-3-methylpentanoate (1)
(Z)-tamarindienal (1)
(aR)-3',3"'-dimethoxycupressuflavone (1)
(aR)-3'-methoxycupressuflavone (1)
1,5-Diaminopentane (1)
1-O-vanilloyl-beta-D-glucose (1)
1-nitroheptane (1)
18-beta-glycyrrhetinic acid (1)
2'-O-acetylsalicin (1)
2'-acetylsalicortin (1)
2,3-dihydroxybenzoic acid (1)
2,6-dihydroxybenzoic acid (1)
2-Dehydro-3-deoxy-D-arabino-heptonate 7-phosphate (1)
2-amino-3-methoxy-benzoic acid (1)
2-aminomuconic acid semialdehyde (1)
2-hydroxy-4-methylvaleric acid (1)
2-hydroxybutyrate (1)
2-hydroxyvalerate (1)
2-isopropylmaleic acid (1)
3'-O-acetylsalicin (1)
3'-O-benzoylsalicin (1)
3'-acetylsalicortin (1)
3,4-dihydroxybenzoic acid (1)

First Public Date

2025 (1)
2014 (1)

Modification

Not available (1)

Study type

Transcription profiling by array (99)
RNA-seq of coding RNA (9)
ChIP-seq (6)
Transcription profiling by tiling array (4)
Unknown experiment type (3)
Comparative genomic hybridization by array (3)
ChIP-chip by tiling array (1)
Genotyping by array (1)
Transcription profiling by RT-PCR (1)
MicroRNA profiling by array (1)
Methylation profiling by array (1)
RNA-seq of non coding RNA (1)

Release Date

2022 (404)
2021 (381)
2025 (368)
2023 (335)
2024 (311)
2020 (236)
2019 (232)
2018 (170)
2015 (151)
2017 (149)
2016 (133)
2014 (108)
2013 (84)
2011 (80)
2012 (65)
2026 (64)
2010 (53)
2009 (39)
2008 (33)
2007 (15)
2005 (9)
2004 (6)
2006 (6)
1999 (5)
2003 (4)
2002 (2)
2000 (2)
1998 (2)
2001 (1)

Lab affiliation

Department of Chemistry, Imperial College London, Molecular Sciences Research Hub, London, W12 0BZ, UK The Francis Crick Institute, London, NW1 1AT, UK (4)
Clinical Collaboration Unit Translational Immunology, German Cancer Consortium (DKTK), Department of Internal Medicine, University Hospital Tübingen, Tübingen, Germany (3)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (3)
Institute for Genetics, CECAD Research Center, University of Cologne, Joseph-Stelzmann-Straße 26, 50931 Cologne, Germany (3)
1 German Cancer Consortium of Translational Cancer Research (DKTK) and German Cancer Research Center (DKFZ), Heidelberg, Germany 2 IIIrd Medical Department, Klinikum rechts der Isar, School of Medicine, Technical University of Munich, Munich, Germany 3 Center for Translational Cancer Research (TranslaTUM), School of Medicine, Technical University of Munich, Munich, Germany (1)
1) German Center for Neurodegenerative Diseases (DZNE), 72076 Tübingen, Germany (2) University of Tübingen, Center for Ophthalmology, Institute for Ophthalmic Research, 72074 Tübingen, Germany (1)
Biozentrum, University of Basel, 4056 Basel, Switzerland (1)
CMB - Center for Molecular Biomedicine Hans-Knöll-Str. 2 07745 Jena (1)
CMB - Center for Molecular Biomedicine Hans-Knöll-Str. 2 07745 Jena (1)
Centre for Medicines Discovery & Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford, UK (1)
Centre for Medicines Discovery, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. Target Discovery Institute, Nuffield Department of Medicine, University of Oxford, Old Road Campus, Roosevelt Drive, Oxford, UK. (1)
Centre for Medicines Discovery, Nuffield Department of Medicine; Oxford OX3 7BN, UK. Target Discovery Institute, Nuffield Department of Medicine; Oxford OX3 7BN, UK. (1)
Chief Scientific Officer, Pelago Bioscience AB (1)
Chief Scientific Offiser, Pelago Bioscience AB (1)
Clinical Collaboration Unit Translational Immunology, University Hospital Tübingen, Tübingen, Germany (1)
Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, USA Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, USA Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill, USA (1)
Department for Cell Biology Biomedical Center (BMC) Medical Faculty, LMU Großhaderner Straße 9, 82152 Planegg-Martinsried, Germany (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biology, Maynooth University, Maynooth, Co. Kildare, Ireland (1)
Department of Chemistry, Imperial College London, Molecular Research Science Hub, 80 Wood Lane, London W12 0BZ, United Kingdom. The Francis Crick Institute, 1 Midland Road, London NW1 1AT, United Kingdom. (1)
Department of Dermatology, University Medical Center Hamburg-Eppendorf, Hamburg, Germany (1)
Department of Glycobiology, Institute of Chemistry, Slovak Academy of Sciences, Bratislava, Slovakia (1)
Department of Hematology and Oncology, University of Tübingen, Germany (1)
Department of Immunology, Interfaculty Institute for Cell Biology, University of Tübingen, Tübingen, Germany (1)
Department of Peptide-based Immunotherapy, Institute of Immunology, University and University Hospital Tübingen, Tübingen, Germany (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tuebingen, Germany (1)
Department of Peptide-based Immunotherapy, University and University Hospital Tübingen, Tübingen, Germany (lab head) (1)
Department of Physiological Genomics Department for Cell Biology & Anatomy Medical Faculty Biomedical Center (BMC) Ludwig-Maximilians-University, 82152 Planegg-Martinsried, Germany (1)
Department of Tumor Biology, University Medical Center Hamburg‑Eppen‑dorf, Martinistraße 52, 20246 Hamburg, Germany. (1)
Derpartmen of Dermatology Medical University of Vienna (1)

Tags

xref:PubMed:19925653 (1)
xref:EuropePMC:PMC12753642 (1)

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Molecular Detection and Characterization of the mecA and nuc Genes From Staphylococcus Species (S. aureus, S. pseudintermedius, and S. schleiferi) Isolated From Dogs Suffering Superficial Pyoderma and Their Antimicrobial Resistance Profiles.

Not available

S-EPMC7390895 | biostudies-literature

Rapid Synthesis of the epi-Biotin Sulfone via Tandem S,N-Carbonyl Migration/aza-Michael/Spirocyclization and Haller-Bauer Reaction.

Not available

S-EPMC9134234 | biostudies-literature

Transcription profiling of S. cerevisiae to investigate formaldehyde as source of free-energy during growth on glucose

Previously, it has been demonstrated that formate can be utilized by Saccharomyces cerevisiae as additional energy source using cells grown in a glucose-limited chemostat. Here, we investigated utilization of formaldehyde as co-substrate. Since endogenous formaldehyde dehydrogenase activities were i...

ORGANISM(S): Saccharomyces cerevisiae

2008-10-18 | E-GEOD-8902 | biostudies-arrayexpress

Transcription profiling of S. cerevisiae chemostat cultures limiting for carbon, nitrogen, phosphorus, sulfur under aerobic and anaerobic conditions

The goal of this study was to study this interaction by analyzing genome-wide transcriptional responses to four different nutrient-limitation regimes under aerobic and anaerobic conditions in chemostat cultures of S. cerevisiae. This â€˜two-dimensionalâ€™ approach resulted in a new, robust set of â€...

ORGANISM(S): Saccharomyces cerevisiae

2007-07-09 | E-GEOD-1723 | biostudies-arrayexpress

Single-nucleosome mapping of histone modifications in S. cerevisiae.

Not available

S-EPMC1195719 | biostudies-literature

Transcription profiling of S. cerevisiae to zinc limitation in chemostat cultures

Zinc is indispensable for the catalytic activity and structural stability of many proteins, and its deficiency can have severe consequences for microbial growth in natural and industrial environments. For example, Zn depletion in wort negatively affects beer fermentation and quality. Several studies...

ORGANISM(S): Saccharomyces cerevisiae

2008-06-15 | E-GEOD-8035 | biostudies-arrayexpress

Population-Scale Studies of Protein S Abnormalities and Thrombosis.

Not available

S-EPMC11877412 | biostudies-literature

Characterization of Constituents with Potential Anti-Inflammatory Activity in Chinese Lonicera Species by UHPLC-HRMS Based Metabolite Profiling

This study centered on detecting potentially anti-inflammatory active constituents in ethanolic extracts of Chinese Lonicera species by taking an UHPLC-HRMS-based metabolite profiling approach. Extracts from eight different Lonicera species were subjected to both UHPLC-HRMS analysis and to pharmacol...

2022-11-17 | MTBLS3112 | MetaboLights

Transcription profiling of S. cerevisiae response to nitrogen limitation in chemostat culture

ORGANISM(S): Saccharomyces cerevisiae

2008-06-15 | E-GEOD-8089 | biostudies-arrayexpress

High genetic diversity at the regional scale and possible speciation in Sebacina epigaea and S. incrustans.

Not available

S-EPMC3665632 | biostudies-literature

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