Beijing - OmicsDI

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Unknown (130882)
Genomics (10229)
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Methylation profiling (6)
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Organisms

Homo sapiens (414)
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Shewanella piezotolerans WP3 (11)
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cellular organisms (1)

Organisms

Homo sapiens (742)
Mus musculus (734)
soil metagenome (219)
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Rattus norvegicus (93)
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sludge metagenome (61)
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unidentified (32)
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mouse gut metagenome (27)
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wastewater metagenome (21)
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Repository

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pride (657)
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biostudies-arrayexpress (401)
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geo (127)
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dbGaP (4)
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IgG negative for EV71 and CA21 (1)
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Technology Type

Mass Spectrometry (661)
Shotgun proteomics (336)
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Bottom-up proteomics (83)
Mass spectrometry assay (72)
Gel-based experiment (71)
Affinity purification coupled with mass spectrometry proteomics (55)
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SWATH MS (18)
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ESI (4)
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MSE (3)
Proteogenomics (3)
SRM/MRM (3)
Illumina HiSeq 2000, ILLUMINA (2)
Glycoproteomics (2)
HDMSE (2)
RNA mass spectrometry (2)
Illumina OMNIExpress, Affymetrix_6.0, HanChinese_Immunochip (1)
Unknown (1)
NMR spectroscopy (1)
Affinity proteomics (1)
DiaPASEF (1)

Instrument Platform

Illumina HiSeq 2000 (33)
Illumina NovaSeq 6000 (21)
BGISEQ-500 (12)
Illumina HiSeq 2500 (7)
HiSeq X Ten (6)
Illumina HiSeq 4000 (6)
DNBSEQ-T7 (5)
NextSeq 500 (5)
Agilent 2100 Bioanalyzer (Agilent Technologies); Qubit Fluorometer (Thermo Fisher Scientific); standard electrophoresis system (2)
NanoDrop spectrophotometer, Agilent 2100 Bioanalyzer (2)
Illumina Genome Analyzer II (2)
Illumina NovaSeq X (2)
None (2)
NEBNext Ultra II Directional RNA Library Prep Kit, Agilent Bioanalyzer 2100 (1)
TRIzol reagent kit, NanoDrop 2000 spectrophotometer (1)
Field cultivation site in Beijing, China (1)
DNBSEQ Eukaryotic Stranded Transcriptome library preparation- Stranded mRNA Library (1)
Standard computational workstation (1)
DNBSEQ-G50 (1)
Not applicable (1)
Eppendorf Centrifuge (1)
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TruSeq RNA Sample Preparation Kit (Illumina) (1)
Rneasy Plant Mini Kit (Qiagen) (1)
Illumina Genome Analyzer (1)
Illumina Hiseq 2000 (1)
RNeasy Mini Kit (1)
Illumina HiSeq X (1)
NextSeq 2000 (1)
DNBSEQ-G400 (1)

Publication Date

2025 (256)
2022 (239)
2024 (202)
2026 (198)
2023 (166)
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2020 (98)
2019 (92)
2014 (72)
2018 (71)
2015 (67)
2016 (63)
2013 (58)
2017 (55)
2012 (47)
2011 (24)
2010 (24)
2005 (5)
2009 (5)
2008 (5)

UNIPROT ID/AC

A0A087WT59 (6)
A0A087WTX5 (6)
A0A087WYL9 (6)
A0A087X130 (6)
A0A087X1V9 (6)
A0A0A0MS51 (6)
A2NUT2 (6)
B7Z556 (6)
B7Z9A0 (6)
Q9LIE5 (1)
O24646 (1)
Q9FFA7 (1)
Q9LTJ6 (1)
Q9FN03 (1)
Q8LGH4 (1)
Q9M086 (1)
Q9SYX2 (1)
P43254 (1)
Q08477 (1)
P24557 (1)
Q13586 (1)
Q9H7Z7 (1)
P09960 (1)
P36969 (1)
P09917 (1)
P16050 (1)
P18054 (1)
P04054 (1)
Q96D31 (1)
P35354 (1)

CHEBI ID

CHEBI:17368 (38)
CHEBI:17895 (36)
CHEBI:16704 (35)
CHEBI:17295 (33)
CHEBI:16708 (31)
CHEBI:48131 (31)
CHEBI:16015 (31)
CHEBI:16750 (31)
CHEBI:17596 (31)
CHEBI:16359 (30)
CHEBI:15971 (29)
CHEBI:17053 (29)
CHEBI:17154 (29)
CHEBI:15843 (28)
CHEBI:37670 (1)
CHEBI:34146 (1)
CHEBI:28728 (1)
CHEBI:15627 (1)
CHEBI:15646 (1)
CHEBI:15647 (1)
CHEBI:15651 (1)
CHEBI:15626 (1)
CHEBI:15551 (1)
CHEBI:15632 (1)
CHEBI:16595 (1)
CHEBI:15554 (1)
CHEBI:15628 (1)
CHEBI:28209 (1)
CHEBI:15558 (1)
CHEBI:29108 (1)

Metabolite Name

Hypoxanthine (52)
L-Phenylalanine (47)
Riboflavin (42)
Adenine (42)
L-Histidine (41)
Uracil (40)
Choline (40)
Creatine (40)
L-Tyrosine (40)
Adenosine (39)
Guanosine (38)
Uridine (38)
L-Tryptophan (37)
Indole (36)
Thymidine (36)
Guanine (35)
Cytidine (34)
Taurine (33)
Uric acid (32)
Thymine (31)
Pantothenic acid (31)
Spermidine (31)
Cytosine (31)
L-Glutamine (31)
Hexadecanedioic acid (31)
Azelaic acid (31)
Xanthine (31)
Betaine (30)
L-Threonine (30)
Biliverdin (29)

First Public Date

2023 (2088)
2024 (1475)
2025 (1091)
2026 (1014)
2022 (988)
2021 (756)
2020 (655)
2019 (499)
2017 (382)
2018 (376)
2013 (243)
2014 (229)
2015 (170)
2016 (165)
2012 (5)
2010 (3)
2011 (2)

Modelling Approach

Machine learning (13)
Ordinary differential equation model (7)
Population model (2)
Constraint-based model (1)

Study status

Not provided (1)
Recruiting (1)
Completed (1)

Lab affiliation

State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences • Beijing, Beijing Institute of Lifeomics, Beijing, China (8)
Beijing proteome research center (6)
Department of Entomology,Institute of Vegetables and Flowers,Chinese Academy of Agriculture Sciences,Beijing,100081,China (6)
Institutes of Biomedical Sciences and department of Chemistry, Fudan University, Shanghai, China (6)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (5)
National Key Laboratory of Medical Molecular Biology & Department of Immunology, Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, 5 Dong Dan San Tiao, Dongcheng District, Beijing 100005, China. (4)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China (4)
Beijing Institute of Technology (3)
Beijing Tongren Hospital, Capital Medical University (3)
Faculty of Medicine, University of Ottawa, Ottawa, ON Canada (3)
Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences, National Key Laboratory of Medical Molecular Biology & Department of Immunology, No 5 Dongdan Santiao, Dongcheng district, Beijing 100005, China (3)
Institute of Microbiology (3)
Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China. (3)
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China (3)
Key Laboratory of Protein and Peptide Pharmaceuticals & Laboratory of Proteomics, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China (3)
National Center for Protein Science Beijing (3)
National Engineering Research Center for the Emergency Drug, Beijing Institute of Pharmacology and Toxicology, Beijing 100850, China (3)
New Cornerstone Science Laboratory, Tsinghua-Peking Joint Center for Life Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Center for Synthetic and Systems Biology, Department of Chemistry, Tsinghua University, Beijing 100084, China. (3)
State Key Laboratory of Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, No.1 West Beichen Rd., Beijing 100101, China. (3)
State Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China. (3)
State Key Laboratory of Proteomics, National Center for Protein Sciences Beijing, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 102206, China (3)
1State Key Laboratory of Protein and Plant Gene Research, School of Life Sciences, Peking University, Beijing, China 2Department of Biochemistry and Molecular Biology, School of Life Sciences, Peking University, Beijing, China, Peking University, Beijing 100871, China (2)
Beijing Friendship Hospital, Capital Medical University (2)
Beijing Key Laboratory for Dairy Cow Nutrition, Beijing University of Agriculture (2)
Beijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, China (2)
Beijing Key Laboratory of Protein Posttranslational Modifications and Cell Function, Department of Biochemistry and Biophysics, School of Basic Medical Sciences, Peking University Health Science Center, Beijing, 100191, China. (2)
Beijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, China (2)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (2)
Beijing institute of Lifeomics (2)
Center for Reproductive Medicine, Department of Obstetrics and Gynecology, Peking University Third Hospital, Beijing, 100191, China; (2)

Keyword

Septin 9 (1)
SEPT9 (1)
Methylation (1)
FOBT (1)
FIT (1)
Screening (1)
Adenoma (1)
Colonoscopy (1)
CRC (1)

IsPrivate

False (24)

Model Flag

Non Kinetic (1)

Submitter Keywords

Machine Learning Model (13)
Ersilia (12)
FAIR-AIML (12)
COVID-19 (2)

Classification

bacteria (819)
fungi (44)
viruses (42)
helminths (5)
protozoa (5)

Modification

4-tetrahydrothiazine-3-carboxylic acid (1)

Study type

Transcription profiling by array (166)
RNA-seq of coding RNA (103)
RNA-seq of non coding RNA (48)
ChIP-seq (14)
Methylation profiling by high throughput sequencing (11)
RNA-seq of total RNA (6)
RNA-seq of coding RNA from single cells (5)
High-throughput sequencing (4)
Cell line - High-throughput sequencing (4)
Transcription profiling by RT-PCR (4)
Other (4)
Animal - One-color microarray (3)
Unknown experiment type (2)
Human - High-throughput sequencing (2)
Plant - High-throughput sequencing (2)
Translation profiling (2)
Animal - High-throughput sequencing (2)
Genotyping by array (2)
Antigen profiling (2)
Bisulfite-seq (2)
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Transcription profiling by SAGE (1)
MeDIP-seq (1)
MicroRNA profiling by high-throughput sequencing (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
Hi-C (1)
MicroRNA profiling by array (1)
DNA-seq (1)

Release Date

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2022 (18082)
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2024 (14234)
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2020 (10028)
2019 (7586)
2018 (6665)
2017 (5619)
2016 (5144)
2015 (4422)
2014 (3219)
2026 (2383)
2013 (1978)
2012 (1469)
2011 (955)
2010 (664)
2009 (498)
2008 (309)
2007 (181)
2006 (121)
2005 (109)
2004 (60)
2003 (39)
2002 (19)
2000 (11)
2001 (10)
1999 (4)
1997 (2)

Location

China (2)

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Comparative genomic hybridization of Beijing and non-Beijing Myocobacterium tuberculosis isolates from Myanmar

Background. The Beijing family of Mycobacterium tuberculosis is dominant in countries in East Asia. Genomic polymorphisms are a source of diversity within the M.tuberculosis genome and may account for the variation of virulence among M.tuberculosis isolates. To date there are no studies that have ex...

ORGANISM(S): Mycobacterium tuberculosis

2008-09-26 | E-BUGS-66 | biostudies-arrayexpress

Pediococcus sp. beijing

Pediococcus sp. beijing Genome sequencing

PRJNA972316 | ENA

Mycobacterium tuberculosis str. Beijing/W BT1

Mycobacterium tuberculosis str. Beijing/W BT1 genome sequencing

PRJNA36417 | ENA

mycobacterium tuberculosis strain:Beijing lineage

mycobacterium tuberculosis strain:Beijing lineage Genome sequencing

PRJNA273899 | ENA

Mycobacterium tuberculosis strain:Beijing | isolate:5351

Mycobacterium tuberculosis strain:Beijing | isolate:5351 Genome sequencing and assembly

PRJNA273744 | ENA

Mycobacterium tuberculosis strain:Beijing | isolate:M16

Mycobacterium tuberculosis strain:Beijing | isolate:M16 Genome sequencing and assembly

PRJNA273400 | ENA

RNA-Seq of modern Beijing and ancient Beijing strains

PRJEB32709 | ENA

Mycobacterium tuberculosis strain:Beijing lineage

Mycobacterium tuberculosis strain:Beijing lineage Raw sequence reads

PRJNA725394 | ENA

Mycobacterium tuberculosis strain:Beijing-like

Comparative Genomics of Mycobacterium tuberculosis Beijing-like Colombian isolates

PRJNA269967 | ENA

Proteogenomic analysis of Mycobacterium tuberculosis Beijing B0/W148 cluster strains

Nowadays proteomics is the one of the major instruments for editing and correct decryption of genomic information. Genomic correction of socially significant pathogens, like Mycobacterium tuberculosis, is by far the most relevant. We conducted proteogenomic analysis of W-148 strain, which belong to ...

ORGANISM(S): Mycobacterium tuberculosis

2018-10-08 | PXD009489 | Pride

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142973 Results

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