Bennett S S - OmicsDI

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Repository

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UNIPROT ID/AC

P49677 (3)
Q96247 (3)
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ENSEMBL ID

ENSG00000170477 (1)
ENSG00000229353 (1)

CHEBI ID

CHEBI:17351 (4)
CHEBI:17148 (3)
CHEBI:17750 (3)
CHEBI:28044 (3)
CHEBI:33699 (2)
CHEBI:136085 (2)
CHEBI:15978 (2)
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Metabolite Name

D-Sorbitol (3)
L-Glutamine (3)
L-Histidine (3)
L-Phenylalanine (3)
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10-Hydroxydecanoic acid (2)
12-OPDA (2)
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L-Alanine (2)
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L-Lysine (2)
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First Public Date

2023 (1)

Modelling Approach

Ordinary differential equation model (6)
Other (2)

Study status

Recruiting (1)

Lab affiliation

UCSD (15)
Department of Cell & Developmental Biology, University of California, San Diego, CA 92093, USA. (3)
Department of Cell & Developmental Biology, University of California, San Diego, La Jolla, CA (3)
Medical University of Vienna (3)
Ann Romney Center for Neurologic Diseases, Department of Neurology, Brigham and Women’s Hospital and Harvard Medical School, Boston, MA, USA (2)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Lazarettgasse 14, AKH BT 25.3 1090 Vienna, Austria (2)
Department of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA (2)
Department of Cell and Developmental Biology, University of California, San Diego, La Jolla, CA, USA. (2)
Department of Pediatrics and Adolescent Medicine, Medical University of Vienna, Austria (2)
lab (2)
Associate Professor Glyco MS Group Copenhagen Center for Glycomics (CCG) Department of Cellular and Molecular Medicine University of Copenahgen Blegdamsvej 3 2200 Copenhagen N Denmark (1)
Beth Israel Deaconess Medical Center and Harvard Medical School (1)
Biomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands. Netherlands Proteomics Centre, Padualaan 8, 3584 CH Utrecht, the Netherlands (1)
CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences Bennett Laboratory Mass Spectrometry & Proteomics (1)
CeMM, Research Center for Molecular Medicine, Austrian Academy of Sciences, Austria (1)
Center for Translational & Computational Neuroimmunology Department of Neurology 622 West 168th street New York, NY 10032 (1)
Centre for Gene Regulation and Expression University of Dundee (1)
Centre for Proteome Research, University of Liverpool (1)
Cold Spring Harbor Laboratory (1)
Copenhagen Center for Glycomics (CCG), Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics, Department of Cellular and Molecular Medicine, University of Copenhagen (1)
Copenhagen Center for Glycomics, University of Copenhagen, Denmark (1)
Corresponding author of research, responsible for contracting Mass Spec services at CeMM (1)
Corresponding author on the publication and contracted services for MS analysis at CeMM. (1)
Department of Biochemistry and Microbiology, L-Probe Lab Ghent University (1)
Department of Biochemistry and Molecular Genetics, University of Colorado Anschutz Medical Campus, USA (1)
Department of Biological Engineering, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Singapore-MIT Alliance for Research and Technology, Antimicrobial Resistance Interdisciplinary Research Group, Campus for Research Excellence and Technological Enterprise, Singapore 138602, Singapore (1)
Department of Biosciences, Durham University Durham, UK (1)
Department of Cellular & Molecular Medicine, University of California, San Diego, CA 92093, USA. (1)
Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas. (1)

IsPrivate

False (8)

Submitter Keywords

FAIR-AIML (1)
Machine Learning Model (1)

Classification

fungi (1)

Modification

+3amu) (1)
Not available (1)

Study type

Transcription profiling by array (62)
RNA-seq of coding RNA (17)
ChIP-chip by array (3)
ChIP-seq (3)
Unknown experiment type (2)
Comparative genomic hybridization by array (2)
DNA-seq (2)
Human - One-color microarray (1)
Trajectory (1)
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RNA-seq of coding RNA from single cells (1)
Interventional (1)

Release Date

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2003 (2)
2000 (2)
1999 (1)
1996 (1)

Location

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Comparison of S. boulardii cells in H2O vs. S. boulardii cells in H2O+HCl

We sought to better understand the mechanism of acid-induced cell death in Saccharomyces boulardii--a probiotic yeast routinely used to prevent and treat gastrointestinal disorders. To do this we generated microarray gene expression profiles of S. boulardii cells cultured in an acidic environment. T...

ORGANISM(S): Saccharomyces boulardii

2013-01-04 | E-GEOD-43271 | biostudies-arrayexpress

Cell cycle progression in G1 and S phases is CCR4 dependent following ionizing radiation or replication stress in Saccharomyces cerevisiae.

Not available

S-EPMC387653 | biostudies-literature

A comprehensive portrait of tissue-, age- and sex-specific DNA modifications in rodents and humans

DNA damage causes genomic instability underlying many diseases, with traditional analytical approaches providing minimal insight into the spectrum of DNA lesions in vivo. Here we used untargeted chromatography-coupled tandem mass spectrometry-based adductomics (LC-MS/MS) to define the landscape of D...

ORGANISM(S): Homo sapiens (Human) Rattus norvegicus (Rat)

2023-09-12 | PXD045311 | Pride

Adductomics Strp mrm

Genome-wide analysis of Musashi-2 targets reveals novel functions in governing epithelial cell migration

The Musashi-2 (Msi2) RNA-binding protein maintains stem cell self-renewal and promotes oncogenesis by enhancing cell proliferation in hematopoietic and gastrointestinal tissues. However, it is unclear how Msi2 recognizes and regulates mRNA targets in vivo and whether Msi2 primarily controls cell gro...

ORGANISM(S): Mus musculus

2016-04-01 | E-GEOD-71333 | biostudies-arrayexpress

A Signaling Lipid Associated with Alzheimerâ€™s Disease Promotes Mitochondrial Dysfunction

Fundamental changes in the composition and distribution of lipids within the brain are believed to contribute to the cognitive decline associated with Alzheimerâ€™s disease (AD). The mechanisms by which these changes in lipid composition affect cellular function and ultimately cognition are not well...

ORGANISM(S): Saccharomyces cerevisiae

2016-01-21 | E-GEOD-40814 | biostudies-arrayexpress

HMGA2 overexpression induces plasticity in myometrial cells and a transcriptomic profile more similar to that of uterine fibroids.

Not available

S-EPMC11588543 | biostudies-literature

Epidemiological and Clinical Evidence for the Role of Toxins in S. aureus Human Disease.

Not available

S-EPMC7354447 | biostudies-literature

The human brainome: network analysis identifies HSPA2 as a novel Alzheimer’s disease target.

Not available

S-EPMC6136080 | biostudies-literature

NEAT1 is overexpressed in Parkinson's disease substantia nigra and confers drug-inducible neuroprotection from oxidative stress.