Berger Lee L - OmicsDI

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Unknown (306)
Models (2)
Metabolomics (2)
Genomics (1)
Proteomics (1)

Organisms

Homo sapiens (1)
Aspergillus nidulans (1)
Alphavirus (1)
Betaherpesvirinae (1)
Brassica oleracea var. oleracea (1)
Cowpox virus (1)
Coxsackievirus (1)
Cytomegalovirus (1)
Dengue virus (1)
EFO:0001352 (1)
Filoviridae (1)
Hepatitis B virus (1)
Human alphaherpesvirus 1 (1)
Human betaherpesvirus 5 (1)
Human immunodeficiency virus 1 (1)
Human immunodeficiency virus 2 (1)
Influenza A virus (1)
Influenza C virus (1)
Japanese encephalitis virus (1)
Japanese encephalitis virus group (1)
Lyssavirus rabies (1)
Monkeypox virus (1)
Nostoc sp. PCC 7120 = FACHB-418 (1)
Oropouche virus (1)
Orthopoxvirus (1)
Orthopoxvirus vaccinia (1)
Rattus (1)
Ruditapes decussatus (1)
Tick-borne encephalitis virus (1)
Viruses (1)

Repository

BioModels (2)
MetaboLights (2)
biostudies-arrayexpress (1)
pride (1)

Tissue

Cell culture (1)

Technology Type

Mass spectrometry (2)
Bottom-up proteomics (1)
Mass Spectrometry (1)

Instrument Platform

GCMS-QP2010 Plus (Shimadzu) (1)
Liquid Chromatography MS - positive - reverse phase (1)

Publication Date

2024 (1)
2023 (1)
2016 (1)
2022 (1)
2018 (1)
2026 (1)

CHEBI ID

CHEBI:138264 (1)
CHEBI:167209 (1)
CHEBI:166892 (1)
CHEBI:78736 (1)
CHEBI:12936 (1)
CHEBI:32528 (1)
CHEBI:17317 (1)
CHEBI:87978 (1)
CHEBI:67236 (1)
CHEBI:67240 (1)
CHEBI:16988 (1)
CHEBI:17924 (1)
CHEBI:32927 (1)
CHEBI:4139 (1)
CHEBI:32943 (1)
CHEBI:36020 (1)
CHEBI:46050 (1)
CHEBI:28897 (1)
CHEBI:72688 (1)
CHEBI:28817 (1)
CHEBI:22660 (1)
CHEBI:16857 (1)
CHEBI:10642 (1)
CHEBI:37455 (1)
CHEBI:29864 (1)
CHEBI:18237 (1)
CHEBI:17634 (1)
CHEBI:17148 (1)
CHEBI:16865 (1)
CHEBI:17203 (1)

Metabolite Name

D-sorbitol-1-13C m/z_320 (alt. m/z quant.) (1)
D-sorbitol-1-13C m/z_319 (alt. m/z quant.) (1)
D-sorbitol-1-13C m/z_206 (alt. m/z quant.) (1)
D-sorbitol-1-13C m/z_205 (alt. m/z quant.) (1)
D-sorbitol 13C6 m/z_322 (alt. m/z quant.) (1)
Saturated_Guanine manual (1)
Unknown_17.908, 1332, m/z 247 (1)
5-Hydroxyindole-3-acetic acid, 3 TMS, 35.49, 2212 (1)
Unkown_32.762, 2047, m/z 132 (1)
Mannitol, 6 TMS, 30.6, 1915 (alt. m/z quant. high dynamic range) (1)
D-(+)-Glucose, 5 TMS, MEOX, 30.38, 1902 (alt. m/z quant. high dynamic range) (1)
D-(+)-Galactose, 5 TMS, MEOX, 29.94, 1880 (alt. m/z quant. high dynamic range) (1)
Glutamic acid, 3 TMS, 24.79, 1623 (alt. m/z quant. high dynamic range) (1)
Serotonin, x TMS, 39.11, 2470 (alt. m/z quant. high dynamic range) (1)
D-(+)-Turanose, 7 TMS, 42.29, 2702 (1)
L-Lysine, 3 TMS, 26.54, 1712 (1)
L-Leucine, 2 TMS, 16.74, 1274 (1)
L-Leucine, 1 TMS, 13.8, 1155 (1)
Serine, 2 TMS, 16.43, 1260 (1)
Unknown_38.398, 2421, m/z 387 (1)
Benzoic acid, 1 TMS, 16.26, 1254 (1)
Unknown_53.63, 3702, m/z 311 (1)
Unknown_51.603, 3505, m/z283 (1)
Unknown_46.866, 3064, m/z 169 (1)
Unknown_48.018, 3163, m/z 329 (1)
Unknown_46.848, 3063, m/z 169 (1)
Unknown_44.338, 2848, m/z 103 (1)
Unknown_44.010, 2820, m/z 169 (1)
Unknown_44.002, 2820, m/z 131 (1)
Unknown_43.658, 2792, m/z 126 (1)

IsPrivate

False (2)

Submitter Keywords

Machine Learning Model (2)
FAIR-AIML (1)

Modelling Approach

Random forest procedure (1)
Computational model (1)

Study type

ChIP-seq (1)

Release Date

2018 (38)
2022 (34)
2021 (30)
2024 (22)
2023 (22)
2015 (22)
2016 (19)
2019 (18)
2025 (17)
2020 (17)
2014 (12)
2013 (10)
2017 (9)
2010 (9)
2011 (7)
2012 (6)
2026 (5)
2008 (5)
2009 (3)
2005 (1)
2002 (1)

Lab affiliation

University of Pennsylvania, Cell and Developmental Biology, Epigenetics Institute (1)

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Analysis of metabolomic profile of fermented Orostachys japonicus A. Berger by capillary electrophoresis time of flight mass spectrometry.

Not available

S-EPMC5509444 | biostudies-literature

Phase II Trial and Correlative Genomic Analysis of Everolimus Plus Bevacizumab in Advanced Non-Clear Cell Renal Cell Carcinoma.

Not available

S-EPMC5791841 | biostudies-literature

ACSS2 Upregulation Enhances Neuronal Resilience to Aging and Neurodegeneration

Epigenetic mechanisms, including histone acetylation, play a key role in learning and memory, with recent evidence of a role in neuronal function in Alzheimer’s disease and Related Dementia (ADRD). Acetyl-CoA sythetase 2 (ACSS2) is central to epigenetics and gene regulation, particularly in neurons,...

ORGANISM(S): Homo sapiens (Human)

2026-09-07 | PXD048769 | Pride

Determinants and Clinical Significance of Musculoskeletal Symptoms in Patients With Chronic Graft-Versus-Host Disease.

Not available

S-EPMC9208866 | biostudies-literature

Prevalence and determinants of fatigue in patients with moderate to severe chronic GvHD.

Not available

S-EPMC7511994 | biostudies-literature

Genome-Wide Transcriptome and Chromatin Analysis of Aspergillus nidulans Primary and Secondary Metabolism Reveals Crucial Function for a Kdm5-Family Histone Demethylase.

Histone posttranslational modifications (HPTMs) are involved in regulating the synthesis of fungal bioactive compounds. The exact molecular mechanisms of the silencing/activation of secondary metabolism (SM) clusters by these epigenetic events however are not yet fully understood. This work applies ...

ORGANISM(S): Aspergillus nidulans

2016-04-01 | E-GEOD-72126 | biostudies-arrayexpress

The deubiquitinase USP9X regulates RIT1 protein abundance and oncogenic phenotypes.

Not available

S-EPMC10705424 | biostudies-literature

NIH response criteria measures are associated with important parameters of disease severity in patients with chronic GVHD.

Not available

S-EPMC7665799 | biostudies-literature

The deubiquitinase USP9X regulates RIT1 protein abundance and oncogenic phenotypes.

Not available

S-EPMC11332844 | biostudies-literature

Longitudinal associations of childhood bedtime and sleep routines with adolescent body mass index.